Özge Yoluk
@ozgece.bsky.social
Computational biologist | restless creator with a monkey-appetite | roommates with a floor cat
Let's find Turkey (map of yesterday's earthquakes)
October 28, 2025 at 5:35 PM
Let's find Turkey (map of yesterday's earthquakes)
Receiving royalties: was it worth it? sth between 50-80$ will be tax, 50-70$ will be transfer fees, 80$ will be my fee as I have spent, more but let's say, 2 hours on finding/filling/printing/signing/sharing documents (applied a ChatGPT discount)
👀 I'll either break even or be indebted to myself 🎊💃🏻
👀 I'll either break even or be indebted to myself 🎊💃🏻
October 22, 2025 at 10:44 PM
Receiving royalties: was it worth it? sth between 50-80$ will be tax, 50-70$ will be transfer fees, 80$ will be my fee as I have spent, more but let's say, 2 hours on finding/filling/printing/signing/sharing documents (applied a ChatGPT discount)
👀 I'll either break even or be indebted to myself 🎊💃🏻
👀 I'll either break even or be indebted to myself 🎊💃🏻
Nothing screams science like repeating the mantra louder than the evidence. If only my voice carried half as far as the slogan.
September 25, 2025 at 9:18 PM
Nothing screams science like repeating the mantra louder than the evidence. If only my voice carried half as far as the slogan.
I wish people just wrote what they want to say following the initial greetings they send.
July 10, 2025 at 3:15 PM
I wish people just wrote what they want to say following the initial greetings they send.
Our article benchmarking cofolding methods is out. Key takeaway:
Allosteric ligands are usually placed in the orthosteric site.
www.sciencedirect.com/science/arti...
Allosteric ligands are usually placed in the orthosteric site.
www.sciencedirect.com/science/arti...
Co-folding, the Future of Docking – Prediction of Allosteric and Orthosteric Ligands
In drug discovery understanding protein structures is essential for comprehending their functions and interactions with drugs. Traditional methods lik…
www.sciencedirect.com
July 4, 2025 at 8:10 AM
Our article benchmarking cofolding methods is out. Key takeaway:
Allosteric ligands are usually placed in the orthosteric site.
www.sciencedirect.com/science/arti...
Allosteric ligands are usually placed in the orthosteric site.
www.sciencedirect.com/science/arti...
I'm losing touch with my roots.
The repair crew flipped the windows easily. I flipped one to clean a month ago, it felt like a sure way to die. So I settled for dirty windows. My mother would've made them wait, cleaned it, then had them flip it back.
I didn't even think about it till now. 🤦🏻♀️
The repair crew flipped the windows easily. I flipped one to clean a month ago, it felt like a sure way to die. So I settled for dirty windows. My mother would've made them wait, cleaned it, then had them flip it back.
I didn't even think about it till now. 🤦🏻♀️
July 3, 2025 at 7:17 AM
I'm losing touch with my roots.
The repair crew flipped the windows easily. I flipped one to clean a month ago, it felt like a sure way to die. So I settled for dirty windows. My mother would've made them wait, cleaned it, then had them flip it back.
I didn't even think about it till now. 🤦🏻♀️
The repair crew flipped the windows easily. I flipped one to clean a month ago, it felt like a sure way to die. So I settled for dirty windows. My mother would've made them wait, cleaned it, then had them flip it back.
I didn't even think about it till now. 🤦🏻♀️
I might buy my first apartment if I can sleep with the idea of getting a huge mortgage... My heart can't handle debt.
My cat on the other hand sleeps very soundly. So my revised life goal is getting reborn as a cat in a house where I'm cared for.
My cat on the other hand sleeps very soundly. So my revised life goal is getting reborn as a cat in a house where I'm cared for.
April 26, 2025 at 6:53 PM
I might buy my first apartment if I can sleep with the idea of getting a huge mortgage... My heart can't handle debt.
My cat on the other hand sleeps very soundly. So my revised life goal is getting reborn as a cat in a house where I'm cared for.
My cat on the other hand sleeps very soundly. So my revised life goal is getting reborn as a cat in a house where I'm cared for.
I saw a LinkedIn post asking people to package their code and then learning to write unit tests...
Unit tests first, please! Packaging is an inconvenience, unit tests are a necessity. While you are writing unit tests you'll naturally learn the advantage of packaging. One stone two birds ☠️
Unit tests first, please! Packaging is an inconvenience, unit tests are a necessity. While you are writing unit tests you'll naturally learn the advantage of packaging. One stone two birds ☠️
March 31, 2025 at 7:59 AM
I saw a LinkedIn post asking people to package their code and then learning to write unit tests...
Unit tests first, please! Packaging is an inconvenience, unit tests are a necessity. While you are writing unit tests you'll naturally learn the advantage of packaging. One stone two birds ☠️
Unit tests first, please! Packaging is an inconvenience, unit tests are a necessity. While you are writing unit tests you'll naturally learn the advantage of packaging. One stone two birds ☠️
Suddenly all the labs have a DNA purification kit... That's what having all the AI models around feels like. Accessibility is still revolutionary, leaves more time for QC 😎!
February 25, 2025 at 7:48 PM
Suddenly all the labs have a DNA purification kit... That's what having all the AI models around feels like. Accessibility is still revolutionary, leaves more time for QC 😎!
Preparing for 40: I finally booked an appointment with an audiologist. Hearing aids, here I come!
January 28, 2025 at 11:37 PM
Preparing for 40: I finally booked an appointment with an audiologist. Hearing aids, here I come!
If I were to remain an experimental scientist, my tastiest discoveries would come from accidents which I'm not in a shortage of. Made kefir cheese from the grains forgotten in an open jar in the fridge. I won't complain about not knowing what to do with excess grains anymore.
January 12, 2025 at 8:09 PM
If I were to remain an experimental scientist, my tastiest discoveries would come from accidents which I'm not in a shortage of. Made kefir cheese from the grains forgotten in an open jar in the fridge. I won't complain about not knowing what to do with excess grains anymore.
I thought my education made me the go-to person when a family member needed information on a medical test, diagnosis or treatment.
It turns out my curiosity, and efforts to listen and explain it in a way they would understand without withholding information was the reason.
It turns out my curiosity, and efforts to listen and explain it in a way they would understand without withholding information was the reason.
January 4, 2025 at 11:57 PM
I thought my education made me the go-to person when a family member needed information on a medical test, diagnosis or treatment.
It turns out my curiosity, and efforts to listen and explain it in a way they would understand without withholding information was the reason.
It turns out my curiosity, and efforts to listen and explain it in a way they would understand without withholding information was the reason.
Achievements of 2024:
* Started strength training with a personal trainer. Result: 4kg 4x -> 8kg 5x. Discovered muscoskeletal issues that MDs from multiple countries have ignored as a bonus.
* Learned about SQL, OracleDB. Result: The data dump takes 10min instead of 72h.
* Started strength training with a personal trainer. Result: 4kg 4x -> 8kg 5x. Discovered muscoskeletal issues that MDs from multiple countries have ignored as a bonus.
* Learned about SQL, OracleDB. Result: The data dump takes 10min instead of 72h.
November 20, 2024 at 7:34 PM
Achievements of 2024:
* Started strength training with a personal trainer. Result: 4kg 4x -> 8kg 5x. Discovered muscoskeletal issues that MDs from multiple countries have ignored as a bonus.
* Learned about SQL, OracleDB. Result: The data dump takes 10min instead of 72h.
* Started strength training with a personal trainer. Result: 4kg 4x -> 8kg 5x. Discovered muscoskeletal issues that MDs from multiple countries have ignored as a bonus.
* Learned about SQL, OracleDB. Result: The data dump takes 10min instead of 72h.
As if the system wasn't sad enough 😂 I thought it was a joke when I heard about it but no, it was real and became even more real.
Publish or Perish: A Humorous Party Game about Academia www.kickstarter.com/projects/max...
Publish or Perish: A Humorous Party Game about Academia www.kickstarter.com/projects/max...
Publish or Perish: A Humorous Party Game about Academia
Players race to publish useless nonsense while sabotaging each other and delivering snarky comments, Reviewer 2 style.
www.kickstarter.com
September 17, 2024 at 8:23 PM
As if the system wasn't sad enough 😂 I thought it was a joke when I heard about it but no, it was real and became even more real.
Publish or Perish: A Humorous Party Game about Academia www.kickstarter.com/projects/max...
Publish or Perish: A Humorous Party Game about Academia www.kickstarter.com/projects/max...
The most use I got out of zirconium!
August 23, 2024 at 9:28 PM
The most use I got out of zirconium!
"CyclicPepedia: a knowledge base of natural and synthetic cyclic peptides" by Liu et al.
#peptide #database
academic.oup.com/bib/article/...
#peptide #database
academic.oup.com/bib/article/...
CyclicPepedia: a knowledge base of natural and synthetic cyclic peptides
Abstract. Cyclic peptides offer a range of notable advantages, including potent antibacterial properties, high binding affinity and specificity to target m
academic.oup.com
May 7, 2024 at 5:34 AM
"CyclicPepedia: a knowledge base of natural and synthetic cyclic peptides" by Liu et al.
#peptide #database
academic.oup.com/bib/article/...
#peptide #database
academic.oup.com/bib/article/...
I don't work with quantum computing, I don't work with quantum computing, I don't work with quantum computing.
Let's see whether I'll see Beetle Juice or no longer get requests on quantum computing 😄
Let's see whether I'll see Beetle Juice or no longer get requests on quantum computing 😄
April 10, 2024 at 4:31 PM
I don't work with quantum computing, I don't work with quantum computing, I don't work with quantum computing.
Let's see whether I'll see Beetle Juice or no longer get requests on quantum computing 😄
Let's see whether I'll see Beetle Juice or no longer get requests on quantum computing 😄
Database of 4 Million Medicinal Chemistry-Relevant Ring Systems | Journal of Chemical Information and Modeling pubs.acs.org/doi/epdf/10....
February 5, 2024 at 9:38 PM
Database of 4 Million Medicinal Chemistry-Relevant Ring Systems | Journal of Chemical Information and Modeling pubs.acs.org/doi/epdf/10....
What resources are available for a noob biologist to get started using Linux and tools from command line?
My go-to is practicalcomputing.org
I never needed a book to follow as I had been researching every single command example I was given or came across but some needs it.
#SciSky #CompSky
My go-to is practicalcomputing.org
I never needed a book to follow as I had been researching every single command example I was given or came across but some needs it.
#SciSky #CompSky
December 11, 2023 at 5:56 PM
What resources are available for a noob biologist to get started using Linux and tools from command line?
My go-to is practicalcomputing.org
I never needed a book to follow as I had been researching every single command example I was given or came across but some needs it.
#SciSky #CompSky
My go-to is practicalcomputing.org
I never needed a book to follow as I had been researching every single command example I was given or came across but some needs it.
#SciSky #CompSky
Any sufferers from canker sores? How do you deal with pain?
I have restarted analyzing my own genome with the hopes of finding hints. Being overly ambitious helps.
Here are my first steps:
"all good things come to an end." medium.com/@mocdata/all...
I have restarted analyzing my own genome with the hopes of finding hints. Being overly ambitious helps.
Here are my first steps:
"all good things come to an end." medium.com/@mocdata/all...
November 29, 2023 at 11:07 PM
Any sufferers from canker sores? How do you deal with pain?
I have restarted analyzing my own genome with the hopes of finding hints. Being overly ambitious helps.
Here are my first steps:
"all good things come to an end." medium.com/@mocdata/all...
I have restarted analyzing my own genome with the hopes of finding hints. Being overly ambitious helps.
Here are my first steps:
"all good things come to an end." medium.com/@mocdata/all...
"AF2BIND: Predicting ligand-binding sites using the pair representation of AlphaFold2"
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
November 25, 2023 at 10:26 PM
"AF2BIND: Predicting ligand-binding sites using the pair representation of AlphaFold2"
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...