Kenny Kim
@nextstrain.bsky.social
PhD candidate in Robinson-Rechavi Group, University of Lausanne 🇨🇭Studying moulting and evolution of arthropods. 🐞🐝🐛🦋🦐🦀 #bioinformatics #genomics #evolution #biology
https://orcid.org/0000-0001-6292-9948
https://orcid.org/0000-0001-6292-9948
Reposted by Kenny Kim
link.springer.com/article/10.1...
@ebablab.bsky.social and I helped a bit in this really informative article by Robin Grob in the el Jundi lab on spatial orientation strategies in Lepidoptera. Have a read :-)
@ebablab.bsky.social and I helped a bit in this really informative article by Robin Grob in the el Jundi lab on spatial orientation strategies in Lepidoptera. Have a read :-)
The diversity of lepidopteran spatial orientation strategies – neuronal mechanisms and emerging challenges in a changing world - Journal of Comparative Physiology A
The Lepidoptera, butterflies and moths, display an astonishing diversity of spatial orientation strategies essential for survival, reproduction, and ecological success. These spatial orientation strat...
link.springer.com
November 10, 2025 at 9:18 AM
link.springer.com/article/10.1...
@ebablab.bsky.social and I helped a bit in this really informative article by Robin Grob in the el Jundi lab on spatial orientation strategies in Lepidoptera. Have a read :-)
@ebablab.bsky.social and I helped a bit in this really informative article by Robin Grob in the el Jundi lab on spatial orientation strategies in Lepidoptera. Have a read :-)
👏👏
We are looking for #rstats community feedback on 3 new dplyr functions!
We're aiming to expand the `filter()` family:
- `filter()` to keep rows
- `filter_out()` to drop rows
- `when_any()` and `when_all()` as modifiers
Read more and leave feedback here:
github.com/tidyverse/ti...
We're aiming to expand the `filter()` family:
- `filter()` to keep rows
- `filter_out()` to drop rows
- `when_any()` and `when_all()` as modifiers
Read more and leave feedback here:
github.com/tidyverse/ti...
November 10, 2025 at 12:17 PM
👏👏
Reposted by Kenny Kim
Why are some species smaller than a paperclip while others grow longer than a school bus? How is body size evolution governed in animals? Out now in @pnas.org we tackle these longstanding questions through a genetic lens using my favorite group of fishes as our model!! www.pnas.org/doi/10.1073/...
Parallel shifts in differential gene expression reveal convergent miniaturization in fishes | PNAS
Body size variation in vertebrates is a complex polygenic trait, tightly correlated
with numerous aspects of a species’ biology, ecology, and physi...
www.pnas.org
October 22, 2025 at 9:33 PM
Why are some species smaller than a paperclip while others grow longer than a school bus? How is body size evolution governed in animals? Out now in @pnas.org we tackle these longstanding questions through a genetic lens using my favorite group of fishes as our model!! www.pnas.org/doi/10.1073/...
Reposted by Kenny Kim
Our lab has published a couple of major papers in the past few months, which I would like to highlight in this thread! 🧵
October 23, 2025 at 6:10 AM
Our lab has published a couple of major papers in the past few months, which I would like to highlight in this thread! 🧵
Reposted by Kenny Kim
A lot of pressure on the different grant schemes, and pretty much independent of career stage.
October 17, 2025 at 10:20 AM
A lot of pressure on the different grant schemes, and pretty much independent of career stage.
Reposted by Kenny Kim
Latest work out today in @currentbiology.bsky.social
We find the fly development gene bicoid is much older than previously thought (~20 million yrs older!) 🪰🧬
To pinpoint its origins we tackled the Diptera phylogeny, providing some resolution (many open questions remain).
🔗 tinyurl.com/2vyuevpy
We find the fly development gene bicoid is much older than previously thought (~20 million yrs older!) 🪰🧬
To pinpoint its origins we tackled the Diptera phylogeny, providing some resolution (many open questions remain).
🔗 tinyurl.com/2vyuevpy
Revised evolutionary relationships within Brachycera and the early origin of bicoid in flies
Mulhair et al. uncover a functional bicoid in non-cyclorrhaphan flies, pushing the
gene's origin back by ∼20 million years. Reassessing the Diptera phylogeny using the
largest dataset to date permits ...
www.cell.com
October 17, 2025 at 3:14 PM
Latest work out today in @currentbiology.bsky.social
We find the fly development gene bicoid is much older than previously thought (~20 million yrs older!) 🪰🧬
To pinpoint its origins we tackled the Diptera phylogeny, providing some resolution (many open questions remain).
🔗 tinyurl.com/2vyuevpy
We find the fly development gene bicoid is much older than previously thought (~20 million yrs older!) 🪰🧬
To pinpoint its origins we tackled the Diptera phylogeny, providing some resolution (many open questions remain).
🔗 tinyurl.com/2vyuevpy
Reposted by Kenny Kim
A very nice paper! @naturalselection.bsky.social Congrats!!!👍💪
Reference genome bias in light of species-specific chromosomal reorganization and translocations
Reference genome bias in light of species-specific chromosomal reorganization and translocations
October 15, 2025 at 11:44 AM
A very nice paper! @naturalselection.bsky.social Congrats!!!👍💪
Reference genome bias in light of species-specific chromosomal reorganization and translocations
Reference genome bias in light of species-specific chromosomal reorganization and translocations
Reposted by Kenny Kim
And that's how you integrate digital elements into an exhibition. Part of the temporary "China's Dinosaur World" at the Shanghai Natural History Museum, China. Closing this November.
Video source: Shanghai Let's Meet
Video source: Shanghai Let's Meet
September 27, 2025 at 3:02 AM
And that's how you integrate digital elements into an exhibition. Part of the temporary "China's Dinosaur World" at the Shanghai Natural History Museum, China. Closing this November.
Video source: Shanghai Let's Meet
Video source: Shanghai Let's Meet
Reposted by Kenny Kim
A nice shift in perceived colour between central and peripheral vision. The fixated disc looks purple while the others look blue.
The effect presumably comes from the absence of S-cones in the fovea.
From Hinnerk Schulz-Hildebrandt:
arxiv.org/pdf/2509.115...
The effect presumably comes from the absence of S-cones in the fovea.
From Hinnerk Schulz-Hildebrandt:
arxiv.org/pdf/2509.115...
September 24, 2025 at 12:04 PM
A nice shift in perceived colour between central and peripheral vision. The fixated disc looks purple while the others look blue.
The effect presumably comes from the absence of S-cones in the fovea.
From Hinnerk Schulz-Hildebrandt:
arxiv.org/pdf/2509.115...
The effect presumably comes from the absence of S-cones in the fovea.
From Hinnerk Schulz-Hildebrandt:
arxiv.org/pdf/2509.115...
Reposted by Kenny Kim
The buff-tip moth (Phalera bucephala) has mastered a very particular kind of camouflage.
When they close their wings up, they resemble a broken twig.
Native to large parts of Europe, there's regional pattern variation that reflects the local tree species. This one best resembles birch twigs?
When they close their wings up, they resemble a broken twig.
Native to large parts of Europe, there's regional pattern variation that reflects the local tree species. This one best resembles birch twigs?
September 17, 2025 at 12:20 PM
The buff-tip moth (Phalera bucephala) has mastered a very particular kind of camouflage.
When they close their wings up, they resemble a broken twig.
Native to large parts of Europe, there's regional pattern variation that reflects the local tree species. This one best resembles birch twigs?
When they close their wings up, they resemble a broken twig.
Native to large parts of Europe, there's regional pattern variation that reflects the local tree species. This one best resembles birch twigs?
Reposted by Kenny Kim
Reposted by Kenny Kim
Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change.
Ie: it's not us (Samtools team)! Be warned
Ie: it's not us (Samtools team)! Be warned
September 15, 2025 at 8:40 AM
Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change.
Ie: it's not us (Samtools team)! Be warned
Ie: it's not us (Samtools team)! Be warned
Reposted by Kenny Kim
X-Mapper 🦠🧬🧪 - a sequence aligner developed for microbes, now on Bioconda! 🚀
• 11–24× fewer suboptimal alignments (same for human genome)
• 3–579× lower inconsistency
• improves on ~30% of reads aligned to non-target species
github.com/mathjeff/map...
bioconda.github.io/recipes/x-ma...
#microsky
• 11–24× fewer suboptimal alignments (same for human genome)
• 3–579× lower inconsistency
• improves on ~30% of reads aligned to non-target species
github.com/mathjeff/map...
bioconda.github.io/recipes/x-ma...
#microsky
September 15, 2025 at 2:32 AM
X-Mapper 🦠🧬🧪 - a sequence aligner developed for microbes, now on Bioconda! 🚀
• 11–24× fewer suboptimal alignments (same for human genome)
• 3–579× lower inconsistency
• improves on ~30% of reads aligned to non-target species
github.com/mathjeff/map...
bioconda.github.io/recipes/x-ma...
#microsky
• 11–24× fewer suboptimal alignments (same for human genome)
• 3–579× lower inconsistency
• improves on ~30% of reads aligned to non-target species
github.com/mathjeff/map...
bioconda.github.io/recipes/x-ma...
#microsky
Reposted by Kenny Kim
hey bluesky 👋 visa hurdles mean I’m looking for opportunities outside the US. I’m a computational biologist (bacterial + phage genomics, postdoc in Koonin’s group @ NIH). I am interested in teaming up on funding apps. reach out if this resonates!
September 15, 2025 at 5:26 PM
hey bluesky 👋 visa hurdles mean I’m looking for opportunities outside the US. I’m a computational biologist (bacterial + phage genomics, postdoc in Koonin’s group @ NIH). I am interested in teaming up on funding apps. reach out if this resonates!
Reposted by Kenny Kim
Our annotated chromosome(ish)-scale assembly of the genome of the terrestrial isopod Armadillidium vulgare, the common pillbug, is available on NCBI: www.ncbi.nlm.nih.gov/datasets/gen...
Work carried out at Ecologie et Biologie des Interactions (EBI) lab in Poitiers.
Work carried out at Ecologie et Biologie des Interactions (EBI) lab in Poitiers.
September 12, 2025 at 7:04 AM
Our annotated chromosome(ish)-scale assembly of the genome of the terrestrial isopod Armadillidium vulgare, the common pillbug, is available on NCBI: www.ncbi.nlm.nih.gov/datasets/gen...
Work carried out at Ecologie et Biologie des Interactions (EBI) lab in Poitiers.
Work carried out at Ecologie et Biologie des Interactions (EBI) lab in Poitiers.
Reposted by Kenny Kim
⚠️ We’re excited to announce our invited speakers for the #PalAss Annual Meeting! 🎉
🔗 Registration link ⬇️
palass.org/annual-meeti...
#conference #uk #palaeontology #meeting
🔗 Registration link ⬇️
palass.org/annual-meeti...
#conference #uk #palaeontology #meeting
September 10, 2025 at 8:58 PM
⚠️ We’re excited to announce our invited speakers for the #PalAss Annual Meeting! 🎉
🔗 Registration link ⬇️
palass.org/annual-meeti...
#conference #uk #palaeontology #meeting
🔗 Registration link ⬇️
palass.org/annual-meeti...
#conference #uk #palaeontology #meeting
Reposted by Kenny Kim
“Just when you think you’ve seen it all, social insects reveal another surprise.” https://scim.ag/47sVFyS
Ant queen lays eggs that hatch into two species
Bizarre discovery of interspecies cloning “almost impossible to believe,” biologists say
scim.ag
September 5, 2025 at 8:12 PM
“Just when you think you’ve seen it all, social insects reveal another surprise.” https://scim.ag/47sVFyS
Lunar eclipse seen from Switzerland🌒
September 7, 2025 at 7:52 PM
Lunar eclipse seen from Switzerland🌒
Reposted by Kenny Kim
Reposted by Kenny Kim
Our MoultDB project, which combines fossils, phenotypic, and genomic data about arthropod moulting, highlighted on the @sib.swiss Expasy page: www.expasy.org
Expasy - SIB Swiss Institute of Bioinformatics
Since 1993 Expasy has been the reference of Bioinformatics Resources. Learn everything about Expasy
www.expasy.org
August 21, 2025 at 9:25 AM
Our MoultDB project, which combines fossils, phenotypic, and genomic data about arthropod moulting, highlighted on the @sib.swiss Expasy page: www.expasy.org
Reposted by Kenny Kim
Like for #ismbeccb2025, I'll be live-posting #ESEB2025 from my Mastodon account, which you can follow there or on the bridging account quoted (the "live" will sometimes be a bit delayed).
Another fair warning: next week I'll be at #eseb2025 and probably live-posting quite a bit. I vaguely hope for activity on Mastodon (or at worst Bluesky), but not very optimistic after my experiece at #ismbeccb2025 in July.
August 13, 2025 at 10:53 AM
Like for #ismbeccb2025, I'll be live-posting #ESEB2025 from my Mastodon account, which you can follow there or on the bridging account quoted (the "live" will sometimes be a bit delayed).
Reposted by Kenny Kim
I am announcing an open PhD position involving bioinformatics, genomics and machine learning to work on functional prediction of adaptive genetic variation in krill and herring!
www.uu.se/en/about-uu/...
Going to #ESEB2025 @eseb.bsky.social ?
Find me in poster session 1 for a chat!
www.uu.se/en/about-uu/...
Going to #ESEB2025 @eseb.bsky.social ?
Find me in poster session 1 for a chat!
August 14, 2025 at 10:54 AM
I am announcing an open PhD position involving bioinformatics, genomics and machine learning to work on functional prediction of adaptive genetic variation in krill and herring!
www.uu.se/en/about-uu/...
Going to #ESEB2025 @eseb.bsky.social ?
Find me in poster session 1 for a chat!
www.uu.se/en/about-uu/...
Going to #ESEB2025 @eseb.bsky.social ?
Find me in poster session 1 for a chat!
Reposted by Kenny Kim
A reminder you/your lab can support FlyBase at Cambridge through the following link. Every bit helps. Please share if you yourself can't donate.
www.philanthropy.cam.ac.uk/give-to-camb...
www.philanthropy.cam.ac.uk/give-to-camb...
August 14, 2025 at 5:25 AM
A reminder you/your lab can support FlyBase at Cambridge through the following link. Every bit helps. Please share if you yourself can't donate.
www.philanthropy.cam.ac.uk/give-to-camb...
www.philanthropy.cam.ac.uk/give-to-camb...
Reposted by Kenny Kim
July 30, 2025 at 4:19 AM
Reposted by Kenny Kim
Proud to make my National Geographic debut with this incredible discovery: an extremely weird little guy with independently-evolved "feathers" that solves a longstanding Triassic mystery and makes one of the period's oddest families even stranger
Crested Triassic Reptile
Mirasaura grauvogeli had a featherlike crest and a tail like a monkey. “It's been a long time since I've been so blown away by a new fossil discovery.”
www.nationalgeographic.com
July 23, 2025 at 3:05 PM
Proud to make my National Geographic debut with this incredible discovery: an extremely weird little guy with independently-evolved "feathers" that solves a longstanding Triassic mystery and makes one of the period's oddest families even stranger