National Microbiome Data Collaborative (NMDC)
@microbiomedata.org
Advancing how scientists create, use, and reuse microbiome data. Official Bluesky account of the NMDC.
linktr.ee/microbiomedata
linktr.ee/microbiomedata
🧪 The STREAMS Guidelines were recently published in Nature Microbiology and we now have a “Behind the Paper” blog post available! To read the blog and learn about how the STREAMS Consortium came together to improve reporting in microbiome studies visit: communities.springernature.com/posts/stream...
December 22, 2025 at 7:33 PM
🧪 The STREAMS Guidelines were recently published in Nature Microbiology and we now have a “Behind the Paper” blog post available! To read the blog and learn about how the STREAMS Consortium came together to improve reporting in microbiome studies visit: communities.springernature.com/posts/stream...
Reposted by National Microbiome Data Collaborative (NMDC)
🔬MGI doctoral student Julia Kelliher served as lead author on a global effort involving 248 experts from 28 countries to write guidelines standardizing environmental microbiome research. Published today in Nature Microbiology. @natmicrobiol.nature.com
🔗https://tinyurl.com/yh3dzc72
🔗https://tinyurl.com/yh3dzc72
December 1, 2025 at 4:52 PM
🔬MGI doctoral student Julia Kelliher served as lead author on a global effort involving 248 experts from 28 countries to write guidelines standardizing environmental microbiome research. Published today in Nature Microbiology. @natmicrobiol.nature.com
🔗https://tinyurl.com/yh3dzc72
🔗https://tinyurl.com/yh3dzc72
The STREAMS Consensus Statement was just published in @natmacrobiol.nature.com 🧪 Visit doi.org/10.1038/s415... to read the full article and to explore the STREAMS reporting guidelines!
December 2, 2025 at 4:55 PM
The STREAMS Consensus Statement was just published in @natmacrobiol.nature.com 🧪 Visit doi.org/10.1038/s415... to read the full article and to explore the STREAMS reporting guidelines!
We were at #ASMCUE last week in San Antonio! We co-hosted a workshop with @kbase.us and presented on our Environmental Microbiome Science Certificate Program! Learn more about the program here: microbiomedata.org/certificate-... and thank you to @asm.org for hosting a great conference!
November 25, 2025 at 8:33 PM
We were at #ASMCUE last week in San Antonio! We co-hosted a workshop with @kbase.us and presented on our Environmental Microbiome Science Certificate Program! Learn more about the program here: microbiomedata.org/certificate-... and thank you to @asm.org for hosting a great conference!
We're headed to ASMCUE in San Antonio, TX this weekend! Educators, stop by our workshop with KBase tomorrow and our Microbrew Talk on Sunday to learn more about leveraging the NMDC's resources for microbiome workforce development and undergraduate education🧪 @ASM.org @kbase.us
November 20, 2025 at 8:14 PM
Happy #FieldworkFriday! 🥾 We collected and catalogued dozens of mushrooms with 3 NMDC Champions and mycologists from across the midwest at the Smith Foray in Indiana! 🧪
September 19, 2025 at 5:43 PM
Happy #FieldworkFriday! 🥾 We collected and catalogued dozens of mushrooms with 3 NMDC Champions and mycologists from across the midwest at the Smith Foray in Indiana! 🧪
The @asm.org #ASMCUE early bird registration deadline has been extended to today at midnight! Spots are still available for the workshop that will be hosted by @kbase.us and the NMDC. Learn more and register for the ASMCUE conference here: asm.org/events/asm-c...
September 19, 2025 at 3:24 PM
The @asm.org #ASMCUE early bird registration deadline has been extended to today at midnight! Spots are still available for the workshop that will be hosted by @kbase.us and the NMDC. Learn more and register for the ASMCUE conference here: asm.org/events/asm-c...
Congratulations to the 2026 ASM Microbiome Data Prize awardee Dr. Joao Xavier from the Memorial Sloan Kettering Cancer Center 🎉 See the full list of 2026 ASM award recipients: buff.ly/zDkLi1S
@asm.org
@asm.org
September 11, 2025 at 3:12 PM
Congratulations to the 2026 ASM Microbiome Data Prize awardee Dr. Joao Xavier from the Memorial Sloan Kettering Cancer Center 🎉 See the full list of 2026 ASM award recipients: buff.ly/zDkLi1S
@asm.org
@asm.org
We are already having a busy September! Check out our monthly calendars and event info on our website: microbiomedata.org/events/ 🧪
September 10, 2025 at 8:50 PM
We are already having a busy September! Check out our monthly calendars and event info on our website: microbiomedata.org/events/ 🧪
📣 #ESA2025 attendees, don't miss the organized oral session "Harnessing Microbial Ecology for a Sustainable Future" TODAY at 10am EDT featuring NMDC QA/QC Manager Alicia Clum! @ecologicalsociety.bsky.social
August 12, 2025 at 12:01 PM
📣 #ESA2025 attendees, don't miss the organized oral session "Harnessing Microbial Ecology for a Sustainable Future" TODAY at 10am EDT featuring NMDC QA/QC Manager Alicia Clum! @ecologicalsociety.bsky.social
Our summer conference season is winding down, but we still have some amazing events coming up including #ESA2025 this week! @esamicrobe.bsky.social #ESA 🧪
August 11, 2025 at 4:15 PM
Our summer conference season is winding down, but we still have some amazing events coming up including #ESA2025 this week! @esamicrobe.bsky.social #ESA 🧪
Have you explored the NMDC Field Notes mobile app yet? Check out our new tutorial video for a quick walkthrough! buff.ly/Dohg4gH 🧪
August 7, 2025 at 8:21 PM
Have you explored the NMDC Field Notes mobile app yet? Check out our new tutorial video for a quick walkthrough! buff.ly/Dohg4gH 🧪
Want to learn more about our 2025 Ambassadors? Check out their Snapshots to see what they study, why they joined the NMDC, and how they are impacting the field of microbiome research! Visit: microbiomedata.org/nmdc-snapshots 🧪
August 4, 2025 at 8:20 PM
Want to learn more about our 2025 Ambassadors? Check out their Snapshots to see what they study, why they joined the NMDC, and how they are impacting the field of microbiome research! Visit: microbiomedata.org/nmdc-snapshots 🧪
Happy #FieldworkFriday 🥾Read how 2025 Ambassador Cassandra Miller took her expertise in fieldwork, and all her lessons learned, and helped to turn them into some of the key features you see in the NMDC Field Notes Mobile App! 🧪
microbiomedata.org/2025/04/28/n...
microbiomedata.org/2025/04/28/n...
August 1, 2025 at 8:56 PM
Happy #FieldworkFriday 🥾Read how 2025 Ambassador Cassandra Miller took her expertise in fieldwork, and all her lessons learned, and helped to turn them into some of the key features you see in the NMDC Field Notes Mobile App! 🧪
microbiomedata.org/2025/04/28/n...
microbiomedata.org/2025/04/28/n...
🧪 The summer is flying by and our Summer 2025 edition of "The Microbiome Standard" is out now! Don’t forget to subscribe to future editions and read past ones at microbiomedata.org/newsletters/
July 29, 2025 at 10:14 PM
🧪 The summer is flying by and our Summer 2025 edition of "The Microbiome Standard" is out now! Don’t forget to subscribe to future editions and read past ones at microbiomedata.org/newsletters/
We had a great time at the @esipfed.bsky.social July meeting last week in Seattle! We convened a session on AI-ready data, presented a poster on the STREAMS guidelines, and gave an NMDC demo. Thank you to the organizers for putting together such a great meeting! #ESIP2025 #EarthScienceData
July 28, 2025 at 11:30 PM
We had a great time at the @esipfed.bsky.social July meeting last week in Seattle! We convened a session on AI-ready data, presented a poster on the STREAMS guidelines, and gave an NMDC demo. Thank you to the organizers for putting together such a great meeting! #ESIP2025 #EarthScienceData
Join our session tomorrow from 4-5:30 PDT at the @esipfed.bsky.social meeting to discuss data standards, microbial metadata, and AI-ready data! #EarthScienceData #ESIP2025 🧪
July 23, 2025 at 4:28 PM
Join our session tomorrow from 4-5:30 PDT at the @esipfed.bsky.social meeting to discuss data standards, microbial metadata, and AI-ready data! #EarthScienceData #ESIP2025 🧪
Ambassador Jessica Han hosted a fantastic webinar about #FAIR data practices at @aspbofficial.bsky.social #PlantBio2025! The recording will be made available to registered participants by next week 🧪
July 17, 2025 at 7:05 PM
Ambassador Jessica Han hosted a fantastic webinar about #FAIR data practices at @aspbofficial.bsky.social #PlantBio2025! The recording will be made available to registered participants by next week 🧪
Last week, NMDC Team Members Olivia Hess, Samantha Obermiller, and Beata Meluch attended and presented a poster at SciPy 2025! The poster highlighted the development and use of the NMDC API and its associated packages. They enjoyed the conference and are excited about continuing this work! 🧪
July 14, 2025 at 8:54 PM
Last week, NMDC Team Members Olivia Hess, Samantha Obermiller, and Beata Meluch attended and presented a poster at SciPy 2025! The poster highlighted the development and use of the NMDC API and its associated packages. They enjoyed the conference and are excited about continuing this work! 🧪
Check out our updated tutorial video for the NMDC Submission Portal and learn how it can help you record, validate, and submit the metadata relating to your microbiome samples! www.youtube.com/watch?v=BV8U...
Validating and submitting metadata through the NMDC Submission Portal - 2025 tutorial video
YouTube video by National Microbiome Data Collaborative
www.youtube.com
July 11, 2025 at 9:13 PM
Check out our updated tutorial video for the NMDC Submission Portal and learn how it can help you record, validate, and submit the metadata relating to your microbiome samples! www.youtube.com/watch?v=BV8U...
We are keeping busy this July! 🧪 Highlights:
🦠 @msafungi.bsky.social MSA annual meeting
🦠 "'Omics for Everyone" workshop
🦠 FAIR data best practices @aspbofficial.bsky.social ASPB workshop
🦠 @esipfed.bsky.social ESIP Meeting in Seattle, WA featuring an NMDC-led session on AI-ready data
🦠 @msafungi.bsky.social MSA annual meeting
🦠 "'Omics for Everyone" workshop
🦠 FAIR data best practices @aspbofficial.bsky.social ASPB workshop
🦠 @esipfed.bsky.social ESIP Meeting in Seattle, WA featuring an NMDC-led session on AI-ready data
July 8, 2025 at 10:02 PM
We are keeping busy this July! 🧪 Highlights:
🦠 @msafungi.bsky.social MSA annual meeting
🦠 "'Omics for Everyone" workshop
🦠 FAIR data best practices @aspbofficial.bsky.social ASPB workshop
🦠 @esipfed.bsky.social ESIP Meeting in Seattle, WA featuring an NMDC-led session on AI-ready data
🦠 @msafungi.bsky.social MSA annual meeting
🦠 "'Omics for Everyone" workshop
🦠 FAIR data best practices @aspbofficial.bsky.social ASPB workshop
🦠 @esipfed.bsky.social ESIP Meeting in Seattle, WA featuring an NMDC-led session on AI-ready data
📣 Nominations for the ASM Microbiome Data Prize are due today!
The deadline for the @asm.org Microbiome Data Prize is tomorrow! Apply or nominate a colleague before it's too late. This award recognizes microbiome researchers with distinguished efforts in open science, data management, and data standards asm.org/academy/asm-... 🧪
July 1, 2025 at 8:04 PM
📣 Nominations for the ASM Microbiome Data Prize are due today!
The deadline for the @asm.org Microbiome Data Prize is tomorrow! Apply or nominate a colleague before it's too late. This award recognizes microbiome researchers with distinguished efforts in open science, data management, and data standards asm.org/academy/asm-... 🧪
June 30, 2025 at 9:13 PM
The deadline for the @asm.org Microbiome Data Prize is tomorrow! Apply or nominate a colleague before it's too late. This award recognizes microbiome researchers with distinguished efforts in open science, data management, and data standards asm.org/academy/asm-... 🧪
Reposted by National Microbiome Data Collaborative (NMDC)
It's #WorldMicrobiomeDay! 🦠
We are proud to be a part of this exciting research area through contributions by our amazing authors.
To celebrate this occasion, here are some of our favourite microbiome papers.
Do you have a favourite of yours? let us know in the replies.
#MicroSky #MicrobiomeSky
We are proud to be a part of this exciting research area through contributions by our amazing authors.
To celebrate this occasion, here are some of our favourite microbiome papers.
Do you have a favourite of yours? let us know in the replies.
#MicroSky #MicrobiomeSky
June 27, 2025 at 8:12 AM
It's #WorldMicrobiomeDay! 🦠
We are proud to be a part of this exciting research area through contributions by our amazing authors.
To celebrate this occasion, here are some of our favourite microbiome papers.
Do you have a favourite of yours? let us know in the replies.
#MicroSky #MicrobiomeSky
We are proud to be a part of this exciting research area through contributions by our amazing authors.
To celebrate this occasion, here are some of our favourite microbiome papers.
Do you have a favourite of yours? let us know in the replies.
#MicroSky #MicrobiomeSky