Michael Habig
@michaelhabig.bsky.social
Group leader at Kiel University interested in Fungal Genomics, Accessory Chromosome and Horizontal Chromosome Transfer. Interaction between fungi and animals.
https://fungal-evolutionary-genetics.de/
https://fungal-evolutionary-genetics.de/
Reposted by Michael Habig
1/ Ever needed to annotate TEs in a fungal genome, but didn't know where to start?
We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!
www.biorxiv.org/content/10.1...
We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!
www.biorxiv.org/content/10.1...
October 29, 2025 at 9:02 AM
1/ Ever needed to annotate TEs in a fungal genome, but didn't know where to start?
We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!
www.biorxiv.org/content/10.1...
We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!
www.biorxiv.org/content/10.1...
Reposted by Michael Habig
📣 I’m excited to share two open positions in my lab @leibniz-hki.de. For this interdisciplinary project with @luziagyr.bsky.social, I’m seeking (1) an enthusiastic PhD student interested in fungal natural product research and genetic engineering, as well as (2) a technical assistant 👇🏻
October 21, 2025 at 2:48 PM
📣 I’m excited to share two open positions in my lab @leibniz-hki.de. For this interdisciplinary project with @luziagyr.bsky.social, I’m seeking (1) an enthusiastic PhD student interested in fungal natural product research and genetic engineering, as well as (2) a technical assistant 👇🏻
Want to understand how entire fungal chromosomes can be horizontally transferred?
Join us to unravel the mechanism/consequences of horizontal chromosome transfer in a fungal pathogen as part of an ERC-funded project. Postdoc/PhD positions available.
fungal-evolutionary-genetics.de/open-positio...
Join us to unravel the mechanism/consequences of horizontal chromosome transfer in a fungal pathogen as part of an ERC-funded project. Postdoc/PhD positions available.
fungal-evolutionary-genetics.de/open-positio...
Open Positions
ERC-funded project on the mechanism of horizontal transfer of entire fungal chromosomes PhD PostDoc
fungal-evolutionary-genetics.de
October 13, 2025 at 9:39 AM
Want to understand how entire fungal chromosomes can be horizontally transferred?
Join us to unravel the mechanism/consequences of horizontal chromosome transfer in a fungal pathogen as part of an ERC-funded project. Postdoc/PhD positions available.
fungal-evolutionary-genetics.de/open-positio...
Join us to unravel the mechanism/consequences of horizontal chromosome transfer in a fungal pathogen as part of an ERC-funded project. Postdoc/PhD positions available.
fungal-evolutionary-genetics.de/open-positio...
Reposted by Michael Habig
We are welcoming applications for a full professorship on Molecular and Evolutionary Zoology at Kiel Univerdity, Northern Germany, with fantastic facilities and infrastructure! @uni-kiel.de @crc1182.bsky.social @transevo.bsky.social www.nature.com/naturecareer...
W 3 professorship in Molecular and Evolutionary Zoology - Kiel, Schleswig-Holstein (DE) job with Christian-Albrechts-Universität zu Kiel | 12844416
Kiel University aims to attract more qualified women to professorship positions. The Institute of Zoology at the Faculty of Mathematics and Natural...
www.nature.com
September 8, 2025 at 2:32 PM
We are welcoming applications for a full professorship on Molecular and Evolutionary Zoology at Kiel Univerdity, Northern Germany, with fantastic facilities and infrastructure! @uni-kiel.de @crc1182.bsky.social @transevo.bsky.social www.nature.com/naturecareer...
Reposted by Michael Habig
We have several open positions in my group, funded from the ERC Grant on the Early Sequestered Germline of Fungi. We search broadly for applicants at both PhD and master-level, with a dedicated interest in fungal evolutionary biology. Please forward and RT!
Find the positions here: su.varbi.com
Find the positions here: su.varbi.com
Lediga jobb vid Stockholms universitet
Jobb
su.varbi.com
September 7, 2025 at 1:13 PM
We have several open positions in my group, funded from the ERC Grant on the Early Sequestered Germline of Fungi. We search broadly for applicants at both PhD and master-level, with a dedicated interest in fungal evolutionary biology. Please forward and RT!
Find the positions here: su.varbi.com
Find the positions here: su.varbi.com
Thrilled and honoured to have received an #ERCStG from @erc.europa.eu for my project MobiChrom on horizontal chromosome transfer in fungal pathogens. We’ll explore key questions: What is the mechanism? How is specificity regulated? Are these selfish elements? Exciting times ahead - job ads soon!
📣 The ERC Starting Grant call results are out!
Find out which early-career researchers will receive funding this year, what they will be investigating, where they will be based... plus lots of other #ERCStG facts & figures for 2025!
➡️ buff.ly/IsafuFh
#FrontierResearch 🇪🇺#EUfunded #HorizonEurope
Find out which early-career researchers will receive funding this year, what they will be investigating, where they will be based... plus lots of other #ERCStG facts & figures for 2025!
➡️ buff.ly/IsafuFh
#FrontierResearch 🇪🇺#EUfunded #HorizonEurope
September 5, 2025 at 6:51 AM
Thrilled and honoured to have received an #ERCStG from @erc.europa.eu for my project MobiChrom on horizontal chromosome transfer in fungal pathogens. We’ll explore key questions: What is the mechanism? How is specificity regulated? Are these selfish elements? Exciting times ahead - job ads soon!
Reposted by Michael Habig
Excited to share our new publication, out today in Nature! www.nature.com/articles/s41.... @kanchanj.bsky.social led this fascinating fungal-bacterial interaction project. We are grateful for our wonderful collaborators Brian Peters and David Underhill.
Commensal yeast promotes Salmonella Typhimurium virulence - Nature
Commensal Candida albicans enhances the virulence and dissemination of Salmonella enterica subsp. enterica serovar Typhimurium.
www.nature.com
September 3, 2025 at 4:32 PM
Excited to share our new publication, out today in Nature! www.nature.com/articles/s41.... @kanchanj.bsky.social led this fascinating fungal-bacterial interaction project. We are grateful for our wonderful collaborators Brian Peters and David Underhill.
Reposted by Michael Habig
Really happy this is out in preprint - Congratulations to @graemekettles.bsky.social @zymohaider.bsky.social, and everyone involved for their hard work completing this study! It examines a Z. tritici effector that is a molecular mimic of plant LRRs, and suppresses PTI www.biorxiv.org/content/10.1...
Molecular mimicry of plant cell-surface immune receptors by fungal secreted leucine-rich repeat proteins
Leucine-rich repeat (LRR) receptor-like kinases (LRR-RLKs) are important plant immunity proteins. The wheat pathogen Zymoseptoria tritici produces many virulence effectors during infection; however, m...
www.biorxiv.org
August 24, 2025 at 8:35 PM
Really happy this is out in preprint - Congratulations to @graemekettles.bsky.social @zymohaider.bsky.social, and everyone involved for their hard work completing this study! It examines a Z. tritici effector that is a molecular mimic of plant LRRs, and suppresses PTI www.biorxiv.org/content/10.1...
Reposted by Michael Habig
Doctoral position on genomic basis of Fucus (brown algal) local adaptation - join our exciting #Fubluc team! Fully funded for 3.5 years & we also consider candidates with strong molecular or bioinformatic skillls but no marine / algal experience, see www.geomar.de/en/karriere/...
August 5, 2025 at 6:26 PM
Doctoral position on genomic basis of Fucus (brown algal) local adaptation - join our exciting #Fubluc team! Fully funded for 3.5 years & we also consider candidates with strong molecular or bioinformatic skillls but no marine / algal experience, see www.geomar.de/en/karriere/...
Reposted by Michael Habig
My group at is hiring a PhD student to explore how fungal pathogens that live in the environment will adapt their genomes, acquire new phenotypes, and perhaps even increased infectivity as a result of climate change. Please share!
More info and applications at @ jobs.uni-jena.de/vrbup
More info and applications at @ jobs.uni-jena.de/vrbup
July 29, 2025 at 3:41 PM
My group at is hiring a PhD student to explore how fungal pathogens that live in the environment will adapt their genomes, acquire new phenotypes, and perhaps even increased infectivity as a result of climate change. Please share!
More info and applications at @ jobs.uni-jena.de/vrbup
More info and applications at @ jobs.uni-jena.de/vrbup
Reposted by Michael Habig
📣 Happy to see the journal publication 📄 of our work on Starships 🚀 in Verticillium fungi: terrific work led by @yukiyosato.bsky.social
rdcu.be/exBSp
rdcu.be/exBSp
Starship giant transposons dominate plastic genomic regions in a fungal plant pathogen and drive virulence evolution
Nature Communications - Giant transposons, known as ‘Starships’, mediate horizontal gene transfer between fungal genomes. Here, Sato et al. show that Starships occupy genome regions...
rdcu.be
July 24, 2025 at 10:40 AM
📣 Happy to see the journal publication 📄 of our work on Starships 🚀 in Verticillium fungi: terrific work led by @yukiyosato.bsky.social
rdcu.be/exBSp
rdcu.be/exBSp
Reposted by Michael Habig
📣 I’m recruiting a #Postdoc to help us further our understanding on the infection strategies of our human fungal pathogen. If you’re enthusiastic about research, our interdisciplinary group @leibniz-hki.de will be a good fit for you! Please share!
jobs.hki-jena.de/jobs/Postdoc...
jobs.hki-jena.de/jobs/Postdoc...
Job opportunity Postdoctoral Researcher (m/w/div) in “Microbial Infection Strategies” at Leibniz HKI Jobportal
Wissenschaft/Forschung in Jena
jobs.hki-jena.de
July 17, 2025 at 5:41 AM
📣 I’m recruiting a #Postdoc to help us further our understanding on the infection strategies of our human fungal pathogen. If you’re enthusiastic about research, our interdisciplinary group @leibniz-hki.de will be a good fit for you! Please share!
jobs.hki-jena.de/jobs/Postdoc...
jobs.hki-jena.de/jobs/Postdoc...
Reposted by Michael Habig
The July cover of Genome Biology and Evolution features the work of Dubin, @oliviaroth.bsky.social et al., who investigate sexual antagonism and sex determination in syngnathids with differences in how male pregnancy develops.
🔗 doi.org/10.1093/gbe/evaf103
📷 Olivia Roth
#genome #evolution
🔗 doi.org/10.1093/gbe/evaf103
📷 Olivia Roth
#genome #evolution
July 7, 2025 at 8:39 AM
The July cover of Genome Biology and Evolution features the work of Dubin, @oliviaroth.bsky.social et al., who investigate sexual antagonism and sex determination in syngnathids with differences in how male pregnancy develops.
🔗 doi.org/10.1093/gbe/evaf103
📷 Olivia Roth
#genome #evolution
🔗 doi.org/10.1093/gbe/evaf103
📷 Olivia Roth
#genome #evolution
Reposted by Michael Habig
Wow: check it out; these fungi distribute their chromosomes across different nuclei!
Normally each nucleus has a complete set of all chromosomes.
Distribution of haploid chromosomes into separate nuclei in two pathogenic fungi | Science www.science.org/doi/10.1126/...
Normally each nucleus has a complete set of all chromosomes.
Distribution of haploid chromosomes into separate nuclei in two pathogenic fungi | Science www.science.org/doi/10.1126/...
Distribution of haploid chromosomes into separate nuclei in two pathogenic fungi
Nuclei define eukaryotes, enabling macromolecular compartmentalization and cellular regulation. Each nucleus is believed to contain one or more haploid sets of chromosomes (1N). However, we discovered...
www.science.org
May 16, 2025 at 3:57 AM
Wow: check it out; these fungi distribute their chromosomes across different nuclei!
Normally each nucleus has a complete set of all chromosomes.
Distribution of haploid chromosomes into separate nuclei in two pathogenic fungi | Science www.science.org/doi/10.1126/...
Normally each nucleus has a complete set of all chromosomes.
Distribution of haploid chromosomes into separate nuclei in two pathogenic fungi | Science www.science.org/doi/10.1126/...
Reposted by Michael Habig
Junior faculty job alert in Germany - Marine Evolutionary Genomics @geomarkiel.bsky.social / University of Kiel www.geomar.de/en/karriere/... Marine study system of your choice (no microbes, sorry…), excellent infrastructure and ship access, moderate teaching requirements, closing date 6 June
April 26, 2025 at 3:10 PM
Junior faculty job alert in Germany - Marine Evolutionary Genomics @geomarkiel.bsky.social / University of Kiel www.geomar.de/en/karriere/... Marine study system of your choice (no microbes, sorry…), excellent infrastructure and ship access, moderate teaching requirements, closing date 6 June
Reposted by Michael Habig
@guidopuccetti.bsky.social, Gabriel Scalliet and I are excited to share our latest work.
Resistance in agriculture emerges fast, but we fail to grasp how the myriad mutations in pathogen populations contribute to this.
Please check out and share our latest preprint: www.biorxiv.org/content/10.1...
Resistance in agriculture emerges fast, but we fail to grasp how the myriad mutations in pathogen populations contribute to this.
Please check out and share our latest preprint: www.biorxiv.org/content/10.1...
March 25, 2025 at 10:05 PM
@guidopuccetti.bsky.social, Gabriel Scalliet and I are excited to share our latest work.
Resistance in agriculture emerges fast, but we fail to grasp how the myriad mutations in pathogen populations contribute to this.
Please check out and share our latest preprint: www.biorxiv.org/content/10.1...
Resistance in agriculture emerges fast, but we fail to grasp how the myriad mutations in pathogen populations contribute to this.
Please check out and share our latest preprint: www.biorxiv.org/content/10.1...
Reposted by Michael Habig
📣Call for Abstracts for the Mycological Society of America 2025 Annual Meeting this summer in Madison, Wisconsin. Submit your abstract by March 17th! #MSAfungi25
msa.joynconference.com/v2/
msa.joynconference.com/v2/
February 17, 2025 at 10:08 AM
📣Call for Abstracts for the Mycological Society of America 2025 Annual Meeting this summer in Madison, Wisconsin. Submit your abstract by March 17th! #MSAfungi25
msa.joynconference.com/v2/
msa.joynconference.com/v2/
Our perspective on the horizontal transfer of accessory chromosomes in fungi is now available in Heredity: rdcu.be/d9jOR. It may be a regulated process. Very proud of this collaborative effort with Henrik de Fine Licht (@henriklicht.bsky.social) and Remco Stam (@rstam.bsky.social)!
Horizontal transfer of accessory chromosomes in fungi – a regulated process for exchange of genetic material?
Heredity - Horizontal transfer of accessory chromosomes in fungi – a regulated process for exchange of genetic material?
rdcu.be
February 10, 2025 at 8:00 PM
Our perspective on the horizontal transfer of accessory chromosomes in fungi is now available in Heredity: rdcu.be/d9jOR. It may be a regulated process. Very proud of this collaborative effort with Henrik de Fine Licht (@henriklicht.bsky.social) and Remco Stam (@rstam.bsky.social)!
Reposted by Michael Habig
Germline-restricted chromosome of songbirds has different centromere compared to regular chromosomes https://www.biorxiv.org/content/10.1101/2025.01.23.634594v1
January 26, 2025 at 9:33 PM
Germline-restricted chromosome of songbirds has different centromere compared to regular chromosomes https://www.biorxiv.org/content/10.1101/2025.01.23.634594v1
Reposted by Michael Habig
📣New year, new preprint @biorxiv-microbiol.bsky.social 🎉! A study led by the brilliant @yukiyosato.bsky.social showing that Starship giant transposons dominate plastic genomic regions in the fungal plant pathogen Verticillium dahliae and drive virulence evolution. 🧵[1/12] doi.org/10.1101/2025...
Starship giant transposons dominate plastic genomic regions in a fungal plant pathogen and drive virulence evolution
Starships form a recently discovered superfamily of giant transposons in Pezizomycotina fungi, implicated in mediating horizontal transfer of diverse cargo genes between fungal genomes. Their elusive nature has long obscured their significance, and their impact on genome evolution remains poorly understood. Here, we reveal a surprising abundance and diversity of Starships in the phytopathogenic fungus Verticillium dahliae. Remarkably, Starships dominate the plastic genomic compartments involved in host colonization, are enriched in virulence-associated genes, and exhibit genetic and epigenetic characteristics associated with adaptive genome evolution. We further uncover extensive horizontal transfer of Starships between Verticillium species and, strikingly, from distantly related Fusarium fungi. Finally, we demonstrate how Starship activity facilitated the de novo formation of a novel virulence gene. Our findings illuminate the profound influence of Starship dynamics on fungal genome evolution and the development of virulence. ### Competing Interest Statement The authors have declared no competing interest.
doi.org
January 10, 2025 at 2:23 PM
📣New year, new preprint @biorxiv-microbiol.bsky.social 🎉! A study led by the brilliant @yukiyosato.bsky.social showing that Starship giant transposons dominate plastic genomic regions in the fungal plant pathogen Verticillium dahliae and drive virulence evolution. 🧵[1/12] doi.org/10.1101/2025...
Reposted by Michael Habig
Reference-free identification and pangenome analysis of accessory chromosomes in a major fungal plant pathogen https://www.biorxiv.org/content/10.1101/2024.12.12.627383v1
December 13, 2024 at 11:33 AM
Reference-free identification and pangenome analysis of accessory chromosomes in a major fungal plant pathogen https://www.biorxiv.org/content/10.1101/2024.12.12.627383v1
Reposted by Michael Habig
We're looking for a PhD student on disease mechanisms of the barley pathogen Ramularia collo cygni, supported by a (tax free) fellowship. Please RT.
December 9, 2024 at 8:11 PM
We're looking for a PhD student on disease mechanisms of the barley pathogen Ramularia collo cygni, supported by a (tax free) fellowship. Please RT.
Proud of our recent preprint on Horizontal Chromosome Transfer in Fungi with Remco Stam and Henrik de Fine Licht.
Horizontal transfer of accessory chromosomes in fungi - a regulated process for exchange of genetic material? https://www.biorxiv.org/content/10.1101/2024.11.21.624634v1
Horizontal transfer of accessory chromosomes in fungi - a regulated process for exchange of genetic material? https://www.biorxiv.org/content/10.1101/2024.11.21.624634v1
Horizontal transfer of entire chromosomes has been reported in several fungal pathogens, often signi
www.biorxiv.org
November 24, 2024 at 3:15 PM
Proud of our recent preprint on Horizontal Chromosome Transfer in Fungi with Remco Stam and Henrik de Fine Licht.