Matthieu Najm
@mattanajm.bsky.social
Postodoctoral researcher in computational systems biology @ Institut Pasteur
Reposted by Matthieu Najm
Can't wait to be at @jobim2025.bsky.social #JOBIM25 to present a short demo on the companion ShinyApp (shorturl.at/Os7kB) of our review "Cell-type deconvolution for spatial transcriptomics" recently published in @natrevgenet.nature.com ! #spatial #genomics
Deconvolution toolbox for spatial transcriptomics
shorturl.at
July 7, 2025 at 9:34 AM
Can't wait to be at @jobim2025.bsky.social #JOBIM25 to present a short demo on the companion ShinyApp (shorturl.at/Os7kB) of our review "Cell-type deconvolution for spatial transcriptomics" recently published in @natrevgenet.nature.com ! #spatial #genomics
Reposted by Matthieu Najm
Last week to register ! Don't miss this great opportunity
We are welcoming applications to the 8th edition of the International Curie Course on Computational Systems Biology of Cancer, to be held in Paris, September 22-26, 2025. This year the focus will be on multimodal data analysis and network modelling to master cancer hallmarks. 👇
tinyurl.com/57d4ed2v
tinyurl.com/57d4ed2v
Computational Systems Biology of Cancer - 8th edition - Multimodal data analysis and network modelling to master cancer hallmarks | Institut Curie Advanced Training
The course will gather leading speakers from different fields in cancer systems biology, in cancer research and in clinics. The invited speakers will expose various approaches for omics, imaging, clin...
training.institut-curie.org
June 10, 2025 at 2:00 PM
Last week to register ! Don't miss this great opportunity
Reposted by Matthieu Najm
Yes, there's "accessible" in my group's title. Come at me, Trump!
Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13.
If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)
Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13.
If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)
We‘re excited to welcome @slobentanzer.bsky.social, new PI at the intersection of @diabresearch-dzd.bsky.social and @comphealthmunich.bsky.social @www.helmholtz-munich.de!
His group focuses on „Accessible Biomedical AI Research“ - and he‘s hiring!
Open positions on slolab.ai and: bit.ly/slolab.
His group focuses on „Accessible Biomedical AI Research“ - and he‘s hiring!
Open positions on slolab.ai and: bit.ly/slolab.
PhD Candidates and Postdocs in Accessible Biomedical AI (f/m/x)
jobs.helmholtz-muenchen.de
March 25, 2025 at 1:29 PM
Yes, there's "accessible" in my group's title. Come at me, Trump!
Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13.
If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)
Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13.
If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)
Reposted by Matthieu Najm
Big turnout today in Paris to show solidarity with US-based scientists ❤️ 🗽 #StandUpforScienceFrance @pasteur.fr
March 7, 2025 at 3:54 PM
Big turnout today in Paris to show solidarity with US-based scientists ❤️ 🗽 #StandUpforScienceFrance @pasteur.fr
Reposted by Matthieu Najm
Very grateful to have been awarded a #MSCA post-doc fellowship! With Felix Hol and Teun Bousema, we will bring BuzzWatch to the field to study mosquito behavior in malaria-endemic regions.
Starting in #RadboudUmc, our first goal is to make BuzzWatch portable enough to be transported by bicycle 🦟🚲🇳🇱.
Starting in #RadboudUmc, our first goal is to make BuzzWatch portable enough to be transported by bicycle 🦟🚲🇳🇱.
February 11, 2025 at 6:27 PM
Very grateful to have been awarded a #MSCA post-doc fellowship! With Felix Hol and Teun Bousema, we will bring BuzzWatch to the field to study mosquito behavior in malaria-endemic regions.
Starting in #RadboudUmc, our first goal is to make BuzzWatch portable enough to be transported by bicycle 🦟🚲🇳🇱.
Starting in #RadboudUmc, our first goal is to make BuzzWatch portable enough to be transported by bicycle 🦟🚲🇳🇱.
Reposted by Matthieu Najm
Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41...
February 5, 2025 at 9:15 AM
Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41...
Reposted by Matthieu Najm
Thrilled to share 'BuzzWatch', my post-doc work with Felix Hol and @lambrechtslab.bsky.social
➡️Filming mosquitoes in a cage with a €15 camera but for 700h(1month) revealed fascinating insights into their behavior⌛🦟🎥⏳
preprint🔍 doi.org/10.1101/2025...
DIY guide 🛠️ theomaire.github.io/buzzwatch
🧵⬇️
➡️Filming mosquitoes in a cage with a €15 camera but for 700h(1month) revealed fascinating insights into their behavior⌛🦟🎥⏳
preprint🔍 doi.org/10.1101/2025...
DIY guide 🛠️ theomaire.github.io/buzzwatch
🧵⬇️
BuzzWatch: uncovering multi-scale temporal patterns in mosquito behavior through continuous long-term monitoring
Understanding the temporal dynamics of mosquito behavior is essential for developing effective interventions against pathogen transmission. However, limited knowledge exists about the environmental, p...
doi.org
January 27, 2025 at 5:35 PM
Thrilled to share 'BuzzWatch', my post-doc work with Felix Hol and @lambrechtslab.bsky.social
➡️Filming mosquitoes in a cage with a €15 camera but for 700h(1month) revealed fascinating insights into their behavior⌛🦟🎥⏳
preprint🔍 doi.org/10.1101/2025...
DIY guide 🛠️ theomaire.github.io/buzzwatch
🧵⬇️
➡️Filming mosquitoes in a cage with a €15 camera but for 700h(1month) revealed fascinating insights into their behavior⌛🦟🎥⏳
preprint🔍 doi.org/10.1101/2025...
DIY guide 🛠️ theomaire.github.io/buzzwatch
🧵⬇️
Reposted by Matthieu Najm
The Mathematics of Artificial Intelligence: In this introductory and highly subjective survey, aimed at a general mathematical audience, I showcase some key theoretical concepts underlying recent advancements in machine learning. arxiv.org/abs/2501.10465
January 22, 2025 at 9:11 AM
The Mathematics of Artificial Intelligence: In this introductory and highly subjective survey, aimed at a general mathematical audience, I showcase some key theoretical concepts underlying recent advancements in machine learning. arxiv.org/abs/2501.10465
Reposted by Matthieu Najm
Excited to share our latest #research from @institutcurie.bsky.social on multimodal prediction of #immunotherapy outcome in #lungcancer, published with @springernature.bsky.social in @naturecomms.bsky.social
rdcu.be/d56Fn
@fondationarc.bsky.social & [PRAIRIE Institute](prairie-institute.fr)
rdcu.be/d56Fn
@fondationarc.bsky.social & [PRAIRIE Institute](prairie-institute.fr)
Integration of clinical, pathological, radiological, and transcriptomic data improves prediction for first-line immunotherapy outcome in metastatic non-small cell lung cancer
Nature Communications - Overall survival in metastatic non-small cell lung cancer is improved by immunotherapy but individual responses widely vary, and predictive biomarkers are urgently needed....
rdcu.be
January 13, 2025 at 5:12 PM
Excited to share our latest #research from @institutcurie.bsky.social on multimodal prediction of #immunotherapy outcome in #lungcancer, published with @springernature.bsky.social in @naturecomms.bsky.social
rdcu.be/d56Fn
@fondationarc.bsky.social & [PRAIRIE Institute](prairie-institute.fr)
rdcu.be/d56Fn
@fondationarc.bsky.social & [PRAIRIE Institute](prairie-institute.fr)
Excited to share the final work from my PhD: our study on developing a signalling network gathering the molecular dysregulations caused by the absence of CFTR in cystic fibrosis (CF).
Read the full article published in the journal BMC Genomics at: doi.org/10.1186/s128... 1/5
Read the full article published in the journal BMC Genomics at: doi.org/10.1186/s128... 1/5
From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis - BMC Genomics
Background Cystic Fibrosis (CF) is a monogenic disease caused by mutations in the gene coding the Cystic Fibrosis Transmembrane Regulator (CFTR) protein, but its overall physio-pathology cannot be sol...
doi.org
December 20, 2024 at 3:30 PM
Excited to share the final work from my PhD: our study on developing a signalling network gathering the molecular dysregulations caused by the absence of CFTR in cystic fibrosis (CF).
Read the full article published in the journal BMC Genomics at: doi.org/10.1186/s128... 1/5
Read the full article published in the journal BMC Genomics at: doi.org/10.1186/s128... 1/5