Marta Shocket
@martashocket.bsky.social
Lecturer @ Lancaster University LEC #NewPI | ecology & evolution of infectious disease, climate (change), stats/models, insects, Daphnia | they/she/he | MartaShocket@ecoevo.social 🐘
Reposted by Marta Shocket
@franwin.co.uk drove a massive rework of rTPC this year, making package maintenance much easier. rTPC now supports 49 different model formulations, vignettes are updated, & you can parallelise model fitting using new purrr & mirai, which is DOPE. #rstats 🧪
padpadpadpad.github.io/rTPC/article...
padpadpadpad.github.io/rTPC/article...
October 12, 2025 at 7:04 PM
@franwin.co.uk drove a massive rework of rTPC this year, making package maintenance much easier. rTPC now supports 49 different model formulations, vignettes are updated, & you can parallelise model fitting using new purrr & mirai, which is DOPE. #rstats 🧪
padpadpadpad.github.io/rTPC/article...
padpadpadpad.github.io/rTPC/article...
Reposted by Marta Shocket
I get that the news cycle is packed right now, but I just heard from a colleague at the Smithsonian that this is fully a GIANT SQUID BEING EATEN BY A SPERM WHALE and it’s possibly the first ever confirmed video according to a friend at NOAA
10 YEAR OLD ME IS LOSING HER MIND (a thread 🧵)
10 YEAR OLD ME IS LOSING HER MIND (a thread 🧵)
September 24, 2025 at 8:30 PM
I get that the news cycle is packed right now, but I just heard from a colleague at the Smithsonian that this is fully a GIANT SQUID BEING EATEN BY A SPERM WHALE and it’s possibly the first ever confirmed video according to a friend at NOAA
10 YEAR OLD ME IS LOSING HER MIND (a thread 🧵)
10 YEAR OLD ME IS LOSING HER MIND (a thread 🧵)
Reposted by Marta Shocket
Sometimes you get a nice shot in dreadful light. Unfortunately the water was reflecting the sun right back at me as this great blue heron picked up a baby American alligator. #birds
September 24, 2025 at 5:02 PM
Sometimes you get a nice shot in dreadful light. Unfortunately the water was reflecting the sun right back at me as this great blue heron picked up a baby American alligator. #birds
Reposted by Marta Shocket
You still have 5 days to apply for this awesome postdoc opportunity in the Environmental Data Science Innovation & Impact Lab at the University of Colorado-Boulder! This could be your backyard!
September 10, 2025 at 8:44 PM
You still have 5 days to apply for this awesome postdoc opportunity in the Environmental Data Science Innovation & Impact Lab at the University of Colorado-Boulder! This could be your backyard!
Reposted by Marta Shocket
Two years post-doc position on viral phylodynamics available at CERP.
cerp-epi.com/fr/careers/
cerp-epi.com/fr/careers/
Careers - CERP
Two years post-doc position on viral phylodynamics Title of the position: Post-doc on viral phylodynamics Department: CERP (Center of Excellence in Respiratory Pathogens) and GenEPII (GENomique à visé...
cerp-epi.com
August 25, 2025 at 7:22 PM
Two years post-doc position on viral phylodynamics available at CERP.
cerp-epi.com/fr/careers/
cerp-epi.com/fr/careers/
Reposted by Marta Shocket
Introducing my new #rstats package {kitchensink}
Not sure what the right model to fit is? Should you allow random intercepts, slopes, both? What do Bayesian methods say?
Just call {kitchensink::throw} to fit every possible model and see how your results differ!
Not sure what the right model to fit is? Should you allow random intercepts, slopes, both? What do Bayesian methods say?
Just call {kitchensink::throw} to fit every possible model and see how your results differ!
July 16, 2025 at 7:01 AM
Introducing my new #rstats package {kitchensink}
Not sure what the right model to fit is? Should you allow random intercepts, slopes, both? What do Bayesian methods say?
Just call {kitchensink::throw} to fit every possible model and see how your results differ!
Not sure what the right model to fit is? Should you allow random intercepts, slopes, both? What do Bayesian methods say?
Just call {kitchensink::throw} to fit every possible model and see how your results differ!
Reposted by Marta Shocket
Thanks to everybody who chimed in!
I arrived at the conclusion that (1) there's a lot of interesting stuff about interactions and (2) the figure I was looking for does not exist.
So, I made it myself! Here's a simple illustration of how to control for confounding in interactions:>
I arrived at the conclusion that (1) there's a lot of interesting stuff about interactions and (2) the figure I was looking for does not exist.
So, I made it myself! Here's a simple illustration of how to control for confounding in interactions:>
May 11, 2025 at 5:34 AM
Thanks to everybody who chimed in!
I arrived at the conclusion that (1) there's a lot of interesting stuff about interactions and (2) the figure I was looking for does not exist.
So, I made it myself! Here's a simple illustration of how to control for confounding in interactions:>
I arrived at the conclusion that (1) there's a lot of interesting stuff about interactions and (2) the figure I was looking for does not exist.
So, I made it myself! Here's a simple illustration of how to control for confounding in interactions:>
Reposted by Marta Shocket
New paper out! A common computational approach to predict organismal fitness and distributions in the field could vastly overpredict the potential range of thermal suitability for malaria transmission relative to performance characterized at constant temperatures: www.nature.com/articles/s41...
Mean daily temperatures predict the thermal limits of malaria transmission better than hourly rate summation - Nature Communications
Malaria transmission is sensitive to temperature and models of malaria typically account for daily fluctuations in temperature through a ‘rate summation’ approach. Here, the authors conduct experiment...
www.nature.com
April 11, 2025 at 10:39 AM
New paper out! A common computational approach to predict organismal fitness and distributions in the field could vastly overpredict the potential range of thermal suitability for malaria transmission relative to performance characterized at constant temperatures: www.nature.com/articles/s41...
Reposted by Marta Shocket
"Mean daily temperatures predict the thermal limits of malaria transmission better than hourly rate summation" new paper now out in NatComm, led by @martashocket.bsky.social
doi.org/10.1038/s414...
doi.org/10.1038/s414...
April 11, 2025 at 11:33 AM
"Mean daily temperatures predict the thermal limits of malaria transmission better than hourly rate summation" new paper now out in NatComm, led by @martashocket.bsky.social
doi.org/10.1038/s414...
doi.org/10.1038/s414...
Reposted by Marta Shocket
I received a heartbreaking email today: A paper in a special issue I’m editing is being retracted because one of its authors is afraid of losing their job and their legal status in the U.S. if they publish a scientific study on evolution. Yes, on evolution, nature's engine of diversity.
March 29, 2025 at 11:52 PM
I received a heartbreaking email today: A paper in a special issue I’m editing is being retracted because one of its authors is afraid of losing their job and their legal status in the U.S. if they publish a scientific study on evolution. Yes, on evolution, nature's engine of diversity.
Reposted by Marta Shocket
Don't miss this week's MIDAS Webinar Series featuring Dr. Jacob Barhak.
Date: Friday, March 28 - 1:00 - 2:00p EDT.
Topic: Lessons Learned from Modeling COVID-19: Steps to Take at the Start of the Next Pandemic
Register in Advance: pitt.zoom.us/webinar/regi...
Date: Friday, March 28 - 1:00 - 2:00p EDT.
Topic: Lessons Learned from Modeling COVID-19: Steps to Take at the Start of the Next Pandemic
Register in Advance: pitt.zoom.us/webinar/regi...
Welcome! You are invited to join a webinar: MIDAS Webinar Series - March 2025. After registering, you will receive a confirmation email about joining the webinar.
Title: Lessons Learned from Modeling COVID-19: Steps to Take at the Start of the Next Pandemic.
Speaker: Jacob Barhak
Abstract: The COVID-19 pandemic spurred many computational modeling efforts. Man...
pitt.zoom.us
March 24, 2025 at 1:34 PM
Don't miss this week's MIDAS Webinar Series featuring Dr. Jacob Barhak.
Date: Friday, March 28 - 1:00 - 2:00p EDT.
Topic: Lessons Learned from Modeling COVID-19: Steps to Take at the Start of the Next Pandemic
Register in Advance: pitt.zoom.us/webinar/regi...
Date: Friday, March 28 - 1:00 - 2:00p EDT.
Topic: Lessons Learned from Modeling COVID-19: Steps to Take at the Start of the Next Pandemic
Register in Advance: pitt.zoom.us/webinar/regi...
Reposted by Marta Shocket
If you hate statistics like I do, then you'll love my free lectures. Putting science before statistics, 20 lectures from basics of inference & causal modeling to multilevel models & dynamic state space models. It's all free, made with love and sympathy. 🧪 #stats www.youtube.com/playlist?lis...
September 19, 2024 at 10:56 AM
If you hate statistics like I do, then you'll love my free lectures. Putting science before statistics, 20 lectures from basics of inference & causal modeling to multilevel models & dynamic state space models. It's all free, made with love and sympathy. 🧪 #stats www.youtube.com/playlist?lis...
Reposted by Marta Shocket
This is a great resource! I just watched the first video and it inspired so many ideas for the quantitative ecology course I’m designing for the fall semester.
If you hate statistics like I do, then you'll love my free lectures. Putting science before statistics, 20 lectures from basics of inference & causal modeling to multilevel models & dynamic state space models. It's all free, made with love and sympathy. 🧪 #stats www.youtube.com/playlist?lis...
March 24, 2025 at 2:33 PM
This is a great resource! I just watched the first video and it inspired so many ideas for the quantitative ecology course I’m designing for the fall semester.
Reposted by Marta Shocket
At this point, it is obvious that it is not safe for scholars to travel the US. There are no easy solutions for conferences scheduled in the US this year but it should be cleary to everyone involved that they cannot just go ahead as planned.
18. French scholar coming for conference 🇫🇷
Denied entry and deported for anti-Trump views expressed on social media. 🚨
HT @profpech.bsky.social
Denied entry and deported for anti-Trump views expressed on social media. 🚨
HT @profpech.bsky.social
Etats-Unis : un chercheur français refoulé pour avoir exprimé « une opinion personnelle sur la politique menée par l’administration Trump »
Le ministre de la recherche français a dit sa « préoccupation », mercredi, après cette décision des autorités américaines. Le chercheur du CNRS aurait subi un contrôle aléatoire à son arrivée, avant q...
www.lemonde.fr
March 19, 2025 at 6:45 PM
At this point, it is obvious that it is not safe for scholars to travel the US. There are no easy solutions for conferences scheduled in the US this year but it should be cleary to everyone involved that they cannot just go ahead as planned.
Reposted by Marta Shocket
1/35 New paper out! @jamesTstroud and I dive into why long-term studies are crucial for understanding evolution. They reveal processes impossible to detect in short timescales and capture rare events that transform our understanding of evolutionary dynamics.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
March 19, 2025 at 7:18 PM
1/35 New paper out! @jamesTstroud and I dive into why long-term studies are crucial for understanding evolution. They reveal processes impossible to detect in short timescales and capture rare events that transform our understanding of evolutionary dynamics.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Marta Shocket
“The Trump administration has canceled funding for an ongoing 30-year, nationwide study tracking patients with prediabetes and diabetes, researchers said, at a time when top officials have emphasized their determination to curb the incidence of such chronic conditions.”
NIH cancels funding for landmark diabetes study at a time of focus on chronic disease
The Trump administration has canceled funding for an ongoing 30-year, nationwide study tracking patients with prediabetes and diabetes, researchers said.
www.statnews.com
March 18, 2025 at 12:26 AM
“The Trump administration has canceled funding for an ongoing 30-year, nationwide study tracking patients with prediabetes and diabetes, researchers said, at a time when top officials have emphasized their determination to curb the incidence of such chronic conditions.”
Reposted by Marta Shocket
This was a fun review to work on with James deMayo. We highlight genome-enabled studies from the last ~20 years that provide lab and field perspectives on (often rapid) thermal adaptation. Thanks to JEB for fantastic editorial support!
Evolutionary genetics studies are often used to predict how species may adapt to climate change. In their recent Review, deMayo & Ragland discuss why these studies are only somewhat useful for predicting how invertebrates will respond to climate change
journals.biologists.com/jeb/article/...
journals.biologists.com/jeb/article/...
March 18, 2025 at 1:01 AM
This was a fun review to work on with James deMayo. We highlight genome-enabled studies from the last ~20 years that provide lab and field perspectives on (often rapid) thermal adaptation. Thanks to JEB for fantastic editorial support!
Reposted by Marta Shocket
Hi there, my student is making a survey about the use of R packages in Ecology, could you please spend two mins on filling it 🥹 Very appreciated! And if you could spread it further (RT), that would be just awesome. ❤️
docs.google.com/forms/d/e/1F...
docs.google.com/forms/d/e/1F...
Exploring R Package Usage in Academia
I am running a quick survey to find out which R packages academics use the most in their research and teaching. The goal is to see which tools are essential, spot any gaps, and maybe even discover som...
docs.google.com
March 14, 2025 at 10:15 AM
Hi there, my student is making a survey about the use of R packages in Ecology, could you please spend two mins on filling it 🥹 Very appreciated! And if you could spread it further (RT), that would be just awesome. ❤️
docs.google.com/forms/d/e/1F...
docs.google.com/forms/d/e/1F...
Reposted by Marta Shocket
An album of over 200 pressed seaweeds collected by an anonymous Victorian collector. A transcribed poem is pasted as title page, it begins: "Oh call us not weeds, we are flowers of the sea."
I saw this at UW-Madison Special Collections 🌊📚
CA 19285
#seaweed #herbarium #naturalhistory
I saw this at UW-Madison Special Collections 🌊📚
CA 19285
#seaweed #herbarium #naturalhistory
March 17, 2025 at 10:00 PM
An album of over 200 pressed seaweeds collected by an anonymous Victorian collector. A transcribed poem is pasted as title page, it begins: "Oh call us not weeds, we are flowers of the sea."
I saw this at UW-Madison Special Collections 🌊📚
CA 19285
#seaweed #herbarium #naturalhistory
I saw this at UW-Madison Special Collections 🌊📚
CA 19285
#seaweed #herbarium #naturalhistory
Reposted by Marta Shocket
** Upcoming quantitative conference: **
📈 Environmental and Ecological Statistics Conference 📈
1-3 July, Lancaster, UK. Contributed abstract submission closes 1st April.
📈 Environmental and Ecological Statistics Conference 📈
1-3 July, Lancaster, UK. Contributed abstract submission closes 1st April.
March 17, 2025 at 11:07 AM
** Upcoming quantitative conference: **
📈 Environmental and Ecological Statistics Conference 📈
1-3 July, Lancaster, UK. Contributed abstract submission closes 1st April.
📈 Environmental and Ecological Statistics Conference 📈
1-3 July, Lancaster, UK. Contributed abstract submission closes 1st April.
Reposted by Marta Shocket
Interested in ecological/environmental #stats? Join us at the EnvEcoStats conference at Lancaster Uni 1-3 July 2025 envecostats.wordpress.com 14 days left to submit an abstract - come on ecologists! @bes-quantitative.bsky.social @besmacro.bsky.social @methodsinecoevol.bsky.social #RStats
Environmental and Ecological Statistics Conference
Co-organised by Glasgow University and Lancaster University
envecostats.wordpress.com
March 17, 2025 at 3:56 PM
Interested in ecological/environmental #stats? Join us at the EnvEcoStats conference at Lancaster Uni 1-3 July 2025 envecostats.wordpress.com 14 days left to submit an abstract - come on ecologists! @bes-quantitative.bsky.social @besmacro.bsky.social @methodsinecoevol.bsky.social #RStats
Reposted by Marta Shocket
And some fun pictures from the field in Surat, India.
March 6, 2025 at 9:51 AM
And some fun pictures from the field in Surat, India.
Reposted by Marta Shocket
“It’s extremely alarming that grants that have been vetted by the scientific community and deemed important and impactful to understand the world are now being cancelled because of political ideology,” says @lkfazio.bsky.social.
“This is direct censorship of scientific research.”
“This is direct censorship of scientific research.”
Exclusive: NIH to terminate hundreds of active research grants
Studies that touch on LGBT+ health, gender identity and DEI in the biomedical workforce could be terminated, according to documents obtained by Nature.
www.nature.com
March 6, 2025 at 2:17 AM
“It’s extremely alarming that grants that have been vetted by the scientific community and deemed important and impactful to understand the world are now being cancelled because of political ideology,” says @lkfazio.bsky.social.
“This is direct censorship of scientific research.”
“This is direct censorship of scientific research.”
Reposted by Marta Shocket
Disease ecologist starter pack -- reply with people/organizations to be added or with related lists/feeds
#diseaseecology
🦠🐀🦠🦇🦠🦭🦠🦆🦠 go.bsky.app/RwAuiNT
#diseaseecology
🦠🐀🦠🦇🦠🦭🦠🦆🦠 go.bsky.app/RwAuiNT
December 27, 2024 at 10:26 PM
Disease ecologist starter pack -- reply with people/organizations to be added or with related lists/feeds
#diseaseecology
🦠🐀🦠🦇🦠🦭🦠🦆🦠 go.bsky.app/RwAuiNT
#diseaseecology
🦠🐀🦠🦇🦠🦭🦠🦆🦠 go.bsky.app/RwAuiNT
![A code interface showing the following code: `.data[[var]]`](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:b5d7qatzp22odvyd6xn7lsjl/bafkreiei7mxljhknzk4trdxbib6kjah5xv4kjo3e4mxcufhtdg4nmsbiuu@jpeg)