Rob Edwards
linsalrob.bsky.social
Rob Edwards
@linsalrob.bsky.social
Bioinformatician and microbiologist at Flinders University in Adelaide. @linsalrob on all your socials
Binning genomes from metagenomes? Try @vijinim.bsky.social new graph visualisation tool to understand where your bins go bad!

metagentools.github.io/graphbin-vis...
GraphBin Visualise Wasm
metagentools.github.io
February 9, 2026 at 4:54 AM
#Lithium doesn’t act directly on the brain. Instead, it signals via the gut–brain axis, acts on EC cells, engages TRPM2 and vagal pathways. Our team found a mechanism with major implications for #psychiatry and #bipolar disorder

@flindersuniversity.bsky.social

www.biorxiv.org/content/10.6...
The mood stabilizer lithium alters behaviour and physiology via the gut brain axis.
Lithium, introduced 75 years ago by John Cade1, remains the most effective mood stabilizer for bipolar disorder2. Lithium is proposed to modulate an array of cellular pathways, many ubiquitous to all cells, with pleiotropic roles unlinked to bipolar disorder or lithium responsiveness in genome wide association studies3,4. These mechanisms cannot explain lithium's specific effects on mood and behaviour. We demonstrate that lithium's primary action is in the periphery, not in the brain itself. Lithium acts in the gut to trigger behavioural and physiological changes, akin to those associated with a torpor-like state, that protect individuals from ingested toxins. Lithium activates gastrointestinal enterochromaffin (EC) cells via their Trpm2 cation channels to modulate afferent vagal and area postrema inputs to the brain. Eliminating these inputs by focal brain lesions eliminates lithium's effects, as does ablation of EC cells or their Trpm2 expression. Lithium's Trpm2-dependent activation of EC cells also occurs in human gut tissue, providing translational relevance for our discovery. These findings challenge the prevailing perception that lithium acts directly on the brain. Via a previously unsuspected gut-brain pathway, lithium engages brain circuitry that reduces arousal and interaction with the external world, therapeutic goals in the manic phase of bipolar disorder. ### Competing Interest Statement The authors have declared no competing interest. National Health and Medical Research Council, https://ror.org/011kf5r70 Baszucki Brain Research Fund
www.biorxiv.org
January 28, 2026 at 12:10 AM
New 2026 iVoM series coming up!

Each session includes SCR and 3 ECRs, & plenty of opportunities to interact with the speakers and ask questions.

Sign up for links/updates: docs.google.com/forms/d/1hAB...

First up: Viral Biotechnologies Wed, 28 th January at 17:00 CET / 11:00 EST / 08:00 PST
Registration form for iVoM4
After submitting this form, you will receive the instructions to join our webinars at the email address you provide.
docs.google.com
January 22, 2026 at 2:42 AM
Reposted by Rob Edwards
My time in @martinsteinegger.bsky.social's group is ending, but I’m staying in Korea to build a lab at Sungkyunkwan University School of Medicine. If you or someone you know is interested in molecular machine learning and open-source bioinformatics, please reach out. I am hiring!
mirdita.org
Mirdita Lab - Laboratory for Computational Biology & Molecular Machine Learning
Mirdita Lab builds scalable bioinformatics methods.
mirdita.org
January 20, 2026 at 11:07 AM
🚨 New postdoc opportunity in Aotearoa 🇳🇿 with @drhhnz.bsky.social

RA / Postdoctoral Fellow in honeybee bacteriophages, microbial genetics & molecular evolution at the University of Canterbury (Christchurch).

3-year position, starts March 2026.
🔗 jobs.canterbury.ac.nz/jobdetails/a...
Research Associate / Postdoctoral Fellow - Honeybee Bacteriophages and Advanced Biotechnology - University of Canterbury | Te Whare Wānanga o Waitaha
jobs.canterbury.ac.nz
January 12, 2026 at 3:38 AM
Abandoned mines are ticking time bombs! @flindersuniversity.bsky.social researchers in #FAME are using geochemistry, mineralogy and #microbiome science to design sustainable, microbiology-driven solutions to stop it at the source.

phys.org/news/2025-12...
Research seeks solutions to mine site waste, from the ground up
Thousands of open cut mines lie abandoned worldwide, while more stringent mine site rehabilitation laws in Australia are paving the way for improved long-term restoration efforts.
phys.org
December 11, 2025 at 7:05 AM
Reposted by Rob Edwards
Made a site comparing the sizes of living things :)

The great Julius Csotonyi spent 5 months painting over 60 illustrations for the site, no ai used

> neal.fun/size-of-life/
December 10, 2025 at 4:03 PM
And also a fantastic keynote at #ABACBS2025 on this story!
November 26, 2025 at 9:56 PM
Long read Metagenomics, #phage and #prophage in the gut by Ami Bhatt's group. Beautiful data showing changes in phages over two years

#phagesky

www.nature.com/articles/s41...
Long-read metagenomics reveals phage dynamics in the human gut microbiome - Nature
Complex prophage integration dynamics, including low-level induction, cross-family host range and transposase-mediated mobilization, challenge existing paradigms and deepen our understanding of phage–...
www.nature.com
November 26, 2025 at 9:55 PM
8.1% success= 91.9% of applicants will hear bad news this arvo 😱
Be kind to each other.. bad news for most coming in under embargo. We need more funding in the system...
November 26, 2025 at 5:40 AM
Reposted by Rob Edwards
🧬 Come check out my poster on agtools, an open-source Python framework for analysing and manipulating assembly graphs at #ABACBS2025 Poster #106

💻 Github: github.com/Vini2/agtools
📄 Preprint: biorxiv.org/content/10.110…
November 25, 2025 at 11:21 PM
Reposted by Rob Edwards
Perl reference may or may not be on #confBingo but @torstenseemann.bsky.social was the first thing I though of when that language was mentioned. Congratulations? #abacbs2025
November 26, 2025 at 3:53 AM
Reposted by Rob Edwards
Our cornetto work is now published at www.nature.com/articles/s41...

It can do near-T2T assembly using @nanoporetech.com adaptive sampling
- with less 💸
- reference agnostic, so works for non-humans
- not just blood, even saliva

Just presented at #abacbs2025 yesterday.
Targeted sequencing and iterative assembly of near-complete genomes - Nature Communications
Long-read sequencing enables high-quality genome assemblies, but challenges remain. Here, the authors introduce Cornetto, a method that improves assembly quality, enables genome sequencing from saliva...
www.nature.com
November 26, 2025 at 4:12 AM
Reposted by Rob Edwards
Congratulations Hiruna Samarakoon (yet to be on bluesky) for winning the #abacbs2025 “Torsten Seemann” Outstanding Bioinformatics Software Developer Award!!! 🎉🎉🎉
November 26, 2025 at 5:01 AM
Reposted by Rob Edwards
Perfecting bacterial genome assembly with Autocycler - from the one and only Ryan Wick #ABACBS2025
November 26, 2025 at 12:36 AM
Reposted by Rob Edwards
@rrwick.bsky.social solving all of our problems in long-read bacterial genome assembly with Autocycler. 😃🧬🦠 #ABACBS2025
November 26, 2025 at 12:52 AM
Reposted by Rob Edwards
Loved hearing Dr. Ryan Wick’s talk on genome assemblies with Autocycler. Really amazing hearing from him as I use a lot of his tools in my every day work!

#ABACBS2025
⚫️🔴
🔵⚪️
November 26, 2025 at 12:53 AM
Reposted by Rob Edwards
iplotx by Fabio Zanini supports visualising any network or tree analysis library. Can’t wait to visualise assembly graphs with iplotx! 🤩💻 #ABACBS2025 @abacbs.bsky.social
November 26, 2025 at 1:09 AM
Reposted by Rob Edwards
It was great to present TRECA at ABACBS 2025 as a lightening talk.

Come find my poster #21.

#ABACBS2025 @abacbs.bsky.social
November 26, 2025 at 1:26 AM
Reposted by Rob Edwards
With Slorado, now you have more choices for GPUs when basecalling @nanoporetech.com sequencing data. This is a work we collaborated on with AMD, led by
PhD candidate @bonson-wong.bsky.social (poster at #abacbs2025) and great to see being highlighted in the AMD blog: www.amd.com/en/blogs/202...
www.amd.com
November 26, 2025 at 1:43 AM
Reposted by Rob Edwards
Keeping the naming convention - PholdAPhage - great work Renee github.com/reneegreen81... #ABACBS2025
November 24, 2025 at 11:56 PM
Reposted by Rob Edwards
A great discussion today at #ABACBS2025 on the evolving landscape of research funding in Australia. Insightful perspectives, thoughtful questions, and a much needed conversation for our research community. @abacbs.bsky.social
November 25, 2025 at 1:37 AM
Reposted by Rob Edwards
In case you didn’t know your name badge folds out with more details on the program #ABACBS2025
November 24, 2025 at 4:37 AM
Reposted by Rob Edwards
Time for @zaminiqbal.bsky.social ‘s keynote #ABACBS2025
November 25, 2025 at 7:08 AM