Markus Landthaler
landthalerm.bsky.social
Markus Landthaler
@landthalerm.bsky.social
RNA biologist at Max Delbrück Center for Molecular Medicine @mdc-berlin.bsky.social @BIMSB_MDC
Very harmonious and inspiring collaboration with Niels Gehring, @volkerboehm.bsky.social and team at Uni Köln, and colleagues at @mdc-berlin.bsky.social . Rapid UPF1 depletion illuminates the temporal dynamics of the NMD-regulated human transcriptome: Molecular Cell www.cell.com/molecular-ce...
Rapid UPF1 depletion illuminates the temporal dynamics of the NMD-regulated human transcriptome
UPF1 depletion inhibits nonsense-mediated mRNA decay (NMD) and stabilizes direct target transcripts within hours. Boehm et al. use conditional protein degradation and advanced transcriptomics to map t...
www.cell.com
September 12, 2025 at 7:26 AM
Sensitive dissection of a genomic regulatory landscape using bulk and targeted single-cell activation: Cell Genomics www.cell.com/cell-genomic...
Sensitive dissection of a genomic regulatory landscape using bulk and targeted single-cell activation
Vučićević et al. describe TESLA-seq, which combines pooled CRISPR activation with targeted single-cell RNA-seq to map enhancer-gene connections at high sensitivity. TESLA-seq was applied across a geno...
www.cell.com
September 12, 2025 at 7:12 AM
Reposted by Markus Landthaler
Yes! DEEP-DV geht in die Verlängerung! 🎉
Die DFG hat unserer Forschungsgruppe eine weitere Förderperiode bewilligt – 4 Jahre neue Ideen, Daten und Teamwork!
Danke an alle im Team für den starken Zusammenhalt und an DFG + Gutachter:innen für das Vertrauen in unsere Arbeit. Wir freuen uns riesig! 💪🔬
July 9, 2025 at 4:09 PM
Reposted by Markus Landthaler
New paper:
More than 2700 human 3′UTRs are highly conserved. These 3′UTRs are essential components in mRNA templates, as their deletion decreases protein activity without changing protein abundance. Highly conserved 3′UTRs help the folding of proteins with long IDRs.

www.biorxiv.org/content/10.1...
mRNA 3′UTRs chaperone intrinsically disordered regions to control protein activity
More than 2,700 human mRNA 3′UTRs have hundreds of highly conserved (HC) nucleotides, but their biological roles are unclear. Here, we show that mRNAs with HC 3′UTRs mostly encode proteins with long intrinsically disordered regions (IDRs), including MYC, UTX, and JMJD3. These proteins are only fully active when translated from mRNA templates that include their 3′UTRs, raising the possibility of functional interactions between 3′UTRs and IDRs. Rather than affecting protein abundance or localization, we find that HC 3′UTRs control transcriptional or histone demethylase activity through co-translationally determined protein oligomerization states that are kinetically stable. 3′UTR-dependent changes in protein folding require mRNA-IDR interactions, suggesting that mRNAs act as IDR chaperones. These mRNAs are multivalent, a biophysical RNA feature that enables their translation in network-like condensates, which provide favorable folding environments for proteins with long IDRs. These data indicate that the coding sequence is insufficient for the biogenesis of biologically active conformations of IDR-containing proteins and that RNA can catalyze protein folding. ### Competing Interest Statement The authors have declared no competing interest. Pershing Square Foundation, https://ror.org/04tce9s05 G. Harold & Leila Y. Mathers Foundation National Institutes of Health, DP1GM123454, R35GM144046 Memorial Sloan Kettering Cancer Center, https://ror.org/02yrq0923, P30 CA008748
www.biorxiv.org
July 7, 2025 at 2:28 PM
Reposted by Markus Landthaler
Die @www.helmholtz.de-Gemeinschaft bündelt ihre Aktivitäten in der Präventionsforschung und hat dafür die "Helmholtz Health Prevention Task Force“ ins Leben gerufen. @www.helmholtz-munich.de @mdc-berlin.bsky.social @dzne.science @helmholtzhzi.bsky.social @hzdr.bsky.social @nako.de #Prävention
Helmholtz intensiviert Präventionsforschung
Die Helmholtz-Gemeinschaft bündelt ihre Aktivitäten in der Präventionsforschung und hat dafür die „Helmholtz Health Prevention Task Force“ ins Leben gerufen. In einem jetzt veröffentlichten Strategiep...
t1p.de
April 22, 2025 at 10:56 AM
Join us - NIMSB
nimsb.unl.pt
February 26, 2025 at 8:07 PM
Reposted by Markus Landthaler
I am thrilled to share the first manuscript from my group on identifying sequence and structural features promoting the condensation of RNAs that are organising highly interconnected RNA networks, thereby expanding our understanding of higher-order transcriptome assemblage.
shorturl.at/pmLIj #RNASky
Integrative profiling of condensation-prone RNAs during early development
Complex RNA–protein networks play a pivotal role in the formation of many types of biomolecular condensates. How intrinsic RNA features contribute to condensate formation however remains unclear. Here...
www.biorxiv.org
February 6, 2025 at 9:44 AM
Reposted by Markus Landthaler
We are now accepting applications for the spring round of our fully-funded #PhD positions at @mdc-berlin.bsky.social‼️

Apply for your #ScienceCareer in:
▶️ Genes, Cells and Cell-based Medicine
▶️ Molecular Processes and Therapies
▶️ Integrative Biomedicine

👉 www.mdc-berlin.de/phd 👈
December 18, 2024 at 12:00 PM
#RNASky #RNAbiology
Helmholtz Drug Discovery Conference (HDDC2025) www.mdc-berlin.de/HDDC2025
@MDC_Berlin
from April 28-30, 2025
International Helmholtz Drug Discovery Conference
Already Confirmed Speakers:Kirk Brown                        Alnylam Pharmaceuticals, USA
www.mdc-berlin.de
November 16, 2024 at 7:02 AM