Krishnaswamylab.org
@krishnaswamylab.bsky.social
We develop AI methods for science, particularly deep learning methods based on data geometry, topology and dynamics systems.
(1/N) Thrilled to share that our paper HiPoNet (High dimensional Point cloud Network) to be presented at NeurIPS 2025! HiPoNet treats an entire high-dimensional point cloud as a datapoint! It captures multi-scale geometry and topology of the cloud perform classification and regression tasks.
November 7, 2025 at 2:09 PM
(1/N) Thrilled to share that our paper HiPoNet (High dimensional Point cloud Network) to be presented at NeurIPS 2025! HiPoNet treats an entire high-dimensional point cloud as a datapoint! It captures multi-scale geometry and topology of the cloud perform classification and regression tasks.
Good morning from Vancouver! 🌞⛰️ We’re at #ICML2025 presenting at GenBio + MAS. Come chat with us about machine learning in biology!
With @RobertXiangruTang, @ChenLiu, @DanqiLiao. Views like this make the science even sweeter.🧬🧠
#ML #ComputationalBiology #ICML #Vancouver
With @RobertXiangruTang, @ChenLiu, @DanqiLiao. Views like this make the science even sweeter.🧬🧠
#ML #ComputationalBiology #ICML #Vancouver
July 17, 2025 at 8:30 PM
Good morning from Vancouver! 🌞⛰️ We’re at #ICML2025 presenting at GenBio + MAS. Come chat with us about machine learning in biology!
With @RobertXiangruTang, @ChenLiu, @DanqiLiao. Views like this make the science even sweeter.🧬🧠
#ML #ComputationalBiology #ICML #Vancouver
With @RobertXiangruTang, @ChenLiu, @DanqiLiao. Views like this make the science even sweeter.🧬🧠
#ML #ComputationalBiology #ICML #Vancouver
Reposted by Krishnaswamylab.org
Defining and benchmarking open problems in single-cell analysis - @krishnaswamylab.bsky.social @fabiantheis.bsky.social bit.ly/4l8dsiF
Defining and benchmarking open problems in single-cell analysis - Nature Biotechnology
Nature Biotechnology - Defining and benchmarking open problems in single-cell analysis
bit.ly
July 1, 2025 at 9:02 PM
Defining and benchmarking open problems in single-cell analysis - @krishnaswamylab.bsky.social @fabiantheis.bsky.social bit.ly/4l8dsiF
Reposted by Krishnaswamylab.org
Mark your calendars 🗓️ for June 23 for a Kavli Awards Research in Progress!🧠
Hear from Drs. Bhaskar (@krishnaswamylab.bsky.social), @lashaeneuroxp.bsky.social, Chen (@emonetlab.bsky.social), Martinez-Magaña (@janitzamontalvo.bsky.social), @kuanawanda.bsky.social, Teefe, & @haohy.bsky.social.
Hear from Drs. Bhaskar (@krishnaswamylab.bsky.social), @lashaeneuroxp.bsky.social, Chen (@emonetlab.bsky.social), Martinez-Magaña (@janitzamontalvo.bsky.social), @kuanawanda.bsky.social, Teefe, & @haohy.bsky.social.
May 27, 2025 at 8:31 PM
Mark your calendars 🗓️ for June 23 for a Kavli Awards Research in Progress!🧠
Hear from Drs. Bhaskar (@krishnaswamylab.bsky.social), @lashaeneuroxp.bsky.social, Chen (@emonetlab.bsky.social), Martinez-Magaña (@janitzamontalvo.bsky.social), @kuanawanda.bsky.social, Teefe, & @haohy.bsky.social.
Hear from Drs. Bhaskar (@krishnaswamylab.bsky.social), @lashaeneuroxp.bsky.social, Chen (@emonetlab.bsky.social), Martinez-Magaña (@janitzamontalvo.bsky.social), @kuanawanda.bsky.social, Teefe, & @haohy.bsky.social.
Reposted by Krishnaswamylab.org
New preprint! Excited to share our latest work “Accelerated learning of a noninvasive human brain-computer interface via manifold geometry” ft. outstanding former undergraduate Chandra Fincke, @glajoie.bsky.social, @krishnaswamylab.bsky.social, and @wutsaiyale.bsky.social's Nick Turk-Browne 1/8
Accelerated learning of a noninvasive human brain-computer interface via manifold geometry
Brain-computer interfaces (BCIs) promise to restore and enhance a wide range of human capabilities. However, a barrier to the adoption of BCIs is how long it can take users to learn to control them. W...
doi.org
April 3, 2025 at 11:04 PM
New preprint! Excited to share our latest work “Accelerated learning of a noninvasive human brain-computer interface via manifold geometry” ft. outstanding former undergraduate Chandra Fincke, @glajoie.bsky.social, @krishnaswamylab.bsky.social, and @wutsaiyale.bsky.social's Nick Turk-Browne 1/8
Excited to organize this! Should be an exciting event!!
The 8th annual Graph Signal Processing Workshop is back this May 14-16! Held in Montreal, CA, at MILA! GSP covers all things graphs, signals, learning, & applications!
🔗: gspworkshop.org
👉🏻Abstract submission opens Feb 1
👉🏻 Registration opens Mar 20
🔗: gspworkshop.org
👉🏻Abstract submission opens Feb 1
👉🏻 Registration opens Mar 20
Graph Signal Processing Workshop
GSP Workshop 2025.
gspworkshop.org
January 26, 2025 at 1:55 PM
Excited to organize this! Should be an exciting event!!
Join us for an exciting session in @jointmath.bsky.social tomorrow! Here is our revised schedule!
January 10, 2025 at 7:19 PM
Join us for an exciting session in @jointmath.bsky.social tomorrow! Here is our revised schedule!
We are at @jointmath.bsky.social Jan 8-11!
1/8: My talk at Topological Machine Learning I
1/8: Dhananjay Bhaskar at Contributed Paper session on Topology
1/11 join our special session on Mathematical and Computational Oncology
Also check out @pseudomanifold.topology.rocks on 1/9!!
1/8: My talk at Topological Machine Learning I
1/8: Dhananjay Bhaskar at Contributed Paper session on Topology
1/11 join our special session on Mathematical and Computational Oncology
Also check out @pseudomanifold.topology.rocks on 1/9!!
January 8, 2025 at 4:41 AM
We are at @jointmath.bsky.social Jan 8-11!
1/8: My talk at Topological Machine Learning I
1/8: Dhananjay Bhaskar at Contributed Paper session on Topology
1/11 join our special session on Mathematical and Computational Oncology
Also check out @pseudomanifold.topology.rocks on 1/9!!
1/8: My talk at Topological Machine Learning I
1/8: Dhananjay Bhaskar at Contributed Paper session on Topology
1/11 join our special session on Mathematical and Computational Oncology
Also check out @pseudomanifold.topology.rocks on 1/9!!
Merry Xmas!
December 25, 2024 at 3:15 PM
Merry Xmas!
Looking for talented postdocs in deep learning for neuroscience and neuromodulation with the Murat Gunel lab in neurosurgery (medicine.yale.edu/lab/gunel/)! Projects include brain signal decoding, dynamics modeling for neuromodulation ASD and other conditions. See: krishnaswamylab.org/join
Join the Krishnaswamy Lab
We work on developing foundational mathematical <span class=
krishnaswamylab.org
December 24, 2024 at 3:05 PM
Looking for talented postdocs in deep learning for neuroscience and neuromodulation with the Murat Gunel lab in neurosurgery (medicine.yale.edu/lab/gunel/)! Projects include brain signal decoding, dynamics modeling for neuromodulation ASD and other conditions. See: krishnaswamylab.org/join
Reposted by Krishnaswamylab.org
📢Out now! @krishnaswamylab.bsky.social presents a graph signal processing method that learns gene representations from single-cell data. www.nature.com/articles/s43...
🔓https://rdcu.be/d4kPz
🔓https://rdcu.be/d4kPz
Mapping the gene space at single-cell resolution with gene signal pattern analysis - Nature Computational Science
This work presents a graph signal processing method, gene signal pattern analysis, to embed gene signals from single-cell sequencing data. In diverse experimental set-ups and case studies, GSPA establ...
www.nature.com
December 20, 2024 at 6:17 PM
📢Out now! @krishnaswamylab.bsky.social presents a graph signal processing method that learns gene representations from single-cell data. www.nature.com/articles/s43...
🔓https://rdcu.be/d4kPz
🔓https://rdcu.be/d4kPz
(1/n) Excited to share our work on gene signal pattern analysis (GSPA)---our new method for analyzing gene expression over cellular manifolds! www.nature.com/articles/s43...
Mapping the gene space at single-cell resolution with gene signal pattern analysis - Nature Computational Science
This work presents a graph signal processing method, gene signal pattern analysis, to embed gene signals from single-cell sequencing data. In diverse experimental set-ups and case studies, GSPA establ...
www.nature.com
December 20, 2024 at 6:51 PM
(1/n) Excited to share our work on gene signal pattern analysis (GSPA)---our new method for analyzing gene expression over cellular manifolds! www.nature.com/articles/s43...
Last day to apply for our @wutsaiyale.bsky.social
open rank faculty position in one of several relevant fields including computer science, data science, engineering in addition to psychology, neuroscience and cognitive science!! apply.interfolio.com/153378
open rank faculty position in one of several relevant fields including computer science, data science, engineering in addition to psychology, neuroscience and cognitive science!! apply.interfolio.com/153378
December 2, 2024 at 4:05 PM
Last day to apply for our @wutsaiyale.bsky.social
open rank faculty position in one of several relevant fields including computer science, data science, engineering in addition to psychology, neuroscience and cognitive science!! apply.interfolio.com/153378
open rank faculty position in one of several relevant fields including computer science, data science, engineering in addition to psychology, neuroscience and cognitive science!! apply.interfolio.com/153378
Reposted by Krishnaswamylab.org
🏆 Best Paper Award & Honorable Mention 🏆
Congratulations to our outstanding authors for their exceptional contributions to LoG 2024! 🎉
📜 Your work inspires the entire graph and geometric ML community!
Congratulations to our outstanding authors for their exceptional contributions to LoG 2024! 🎉
📜 Your work inspires the entire graph and geometric ML community!
November 29, 2024 at 9:04 PM
🏆 Best Paper Award & Honorable Mention 🏆
Congratulations to our outstanding authors for their exceptional contributions to LoG 2024! 🎉
📜 Your work inspires the entire graph and geometric ML community!
Congratulations to our outstanding authors for their exceptional contributions to LoG 2024! 🎉
📜 Your work inspires the entire graph and geometric ML community!
Happy thanksgiving!!
November 28, 2024 at 11:24 PM
Happy thanksgiving!!
Up Mont Royal in the rain! For those of you who don’t know I’m on a one-semester sabbatical to Montreal!
November 28, 2024 at 2:15 PM
Up Mont Royal in the rain! For those of you who don’t know I’m on a one-semester sabbatical to Montreal!
Pictures from @logconference.bsky.social meetup Montreal!
November 26, 2024 at 2:07 PM
Pictures from @logconference.bsky.social meetup Montreal!
If you're in Montreal tomorrow, catch us at the @logconference.bsky.social meetup @Mila_Quebec !
sites.google.com/view/log-202...
sites.google.com/view/log-202...
LoG 2024 Montreal
About
sites.google.com
November 25, 2024 at 2:45 AM
If you're in Montreal tomorrow, catch us at the @logconference.bsky.social meetup @Mila_Quebec !
sites.google.com/view/log-202...
sites.google.com/view/log-202...
Reposted by Krishnaswamylab.org
✨EXCITING NEWS! We now have a Bluesky account!!
AND registration for the 3rd Learning on Graphs conference is open 😊
It is virtual, free to attend, livestreamed, and recorded 📹 Sign up today! The conference is this coming week 😱
forms.gle/eYiDCopJGUc8...
AND registration for the 3rd Learning on Graphs conference is open 😊
It is virtual, free to attend, livestreamed, and recorded 📹 Sign up today! The conference is this coming week 😱
forms.gle/eYiDCopJGUc8...
November 24, 2024 at 5:00 PM
✨EXCITING NEWS! We now have a Bluesky account!!
AND registration for the 3rd Learning on Graphs conference is open 😊
It is virtual, free to attend, livestreamed, and recorded 📹 Sign up today! The conference is this coming week 😱
forms.gle/eYiDCopJGUc8...
AND registration for the 3rd Learning on Graphs conference is open 😊
It is virtual, free to attend, livestreamed, and recorded 📹 Sign up today! The conference is this coming week 😱
forms.gle/eYiDCopJGUc8...
Siddharth from our lab explaining protscape and scattering to CT Governor Ned Lamont and others at the AI summit hosted by @boehringer.bsky.social and BioCT arxiv.org/abs/2410.20317!!
November 23, 2024 at 1:09 AM
Siddharth from our lab explaining protscape and scattering to CT Governor Ned Lamont and others at the AI summit hosted by @boehringer.bsky.social and BioCT arxiv.org/abs/2410.20317!!
(1/3) Our lab is at the New England Computer Vision Conference (NECV) right here in New Haven today! Chen Liu is presenting an oral on Imageflownet for longitudinal forecasting of medical images. arxiv.org/abs/2406.14794
ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images
Advances in medical imaging technologies have enabled the collection of longitudinal images, which involve repeated scanning of the same patients over time, to monitor disease progression. However, pr...
arxiv.org
November 22, 2024 at 12:29 PM
(1/3) Our lab is at the New England Computer Vision Conference (NECV) right here in New Haven today! Chen Liu is presenting an oral on Imageflownet for longitudinal forecasting of medical images. arxiv.org/abs/2406.14794
(1/n) Intro...We work on mathematical machine learning and deep learning methods that use dynamics modeling, signal processing, geometry and topology to accelerate scientific discovery from data. Our key focus is representation learning of complex unlabelled data, a host of downstream tasks:
November 21, 2024 at 1:27 PM
(1/n) Intro...We work on mathematical machine learning and deep learning methods that use dynamics modeling, signal processing, geometry and topology to accelerate scientific discovery from data. Our key focus is representation learning of complex unlabelled data, a host of downstream tasks:
Learning on graphs meetups this year!
November 20, 2024 at 5:03 AM
Learning on graphs meetups this year!
After the success of manifold learning in ML, what geometric object do you like next? Algebraic varieties come to mind recently :
Learning algebraic varieties from samples - Revista Matemática Complutense
We seek to determine a real algebraic variety from a fixed finite subset of points. Existing methods are studied and new methods are developed. Our focus lies on aspects of topology and algebraic geom...
link.springer.com
November 19, 2024 at 7:37 PM
After the success of manifold learning in ML, what geometric object do you like next? Algebraic varieties come to mind recently :
Still new to Bluesky. Folks on both this and X, do you double post or do you post different things on each platform?
November 19, 2024 at 12:01 PM
Still new to Bluesky. Folks on both this and X, do you double post or do you post different things on each platform?