Joao Pedro Magalhaes
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jpsenescence.bsky.social
Joao Pedro Magalhaes
@jpsenescence.bsky.social
Scientist decoding the aging genome, professor, geek, entrepreneur, speaker, writer, keen footballer.
I'm delighted to share our curated list of 100 open problems in ageing science.

This represents a collective, systematic effort to map the key challenges and knowledge gaps across biogerontology and offers a roadmap to guide future progress in geroscience.

link.springer.com/article/10.1...
Open problems in ageing science: a roadmap for biogerontology - GeroScience
The field of ageing science has gone through remarkable progress in recent decades, yet many fundamental questions remain unanswered or unexplored. Here we present a curated list of 100 open problems ...
link.springer.com
November 9, 2025 at 11:46 PM
Reposted by Joao Pedro Magalhaes
FOXM1 enhances DNA repair in aged cells to maintain the peripheral heterochromatin barrier to senescence enhancers
www.biorxiv.org/content/10.1...
FOXM1 enhances DNA repair in aged cells to maintain the peripheral heterochromatin barrier to senescence enhancers
DNA damage is a key driver of aging, contributing to epigenetic erosion, senescence, and chronic inflammation. However, genoprotective strategies to counteract aging remain intangible. Here we show th...
www.biorxiv.org
November 7, 2025 at 4:16 PM
Excited to share my new piece @clarkesworldmagazine.com 🚀

I discuss the future of human longevity and its depiction in science fiction. And how the eventual medical control of aging and lifespan will reshape both society and storytelling.

clarkesworldmagazine.com/de_magalhaes...
What is the Retirement Age of a Jedi? by João Pedro de Magalhães
Clarkesworld Science Fiction and Fantasy Magazine and Podcast.
clarkesworldmagazine.com
November 3, 2025 at 7:42 PM
Reposted by Joao Pedro Magalhaes
Reposted by Joao Pedro Magalhaes
A full life cycle biological clock based on routine clinical data and its impact in health and diseases
www.nature.com/articles/s41...
A full life cycle biological clock based on routine clinical data and its impact in health and diseases - Nature Medicine
The biological clock model LifeClock predicts biological age across all life stages from routine clinical data, revealing distinct pediatric and adult disease risk patterns.
www.nature.com
November 1, 2025 at 3:09 PM
New (and provocative) piece with David Gems 🚨

Extending healthspan rather than lifespan should not be the goal of aging research.

Rather, our goal is to understand and intervene in aging to improve late-life health and save of lives: i.e. life-extension.

www.preprints.org/manuscript/2...
www.preprints.org
October 31, 2025 at 6:29 PM
Reposted by Joao Pedro Magalhaes
Talking genetics, aging, and the brain at beautiful Coimbra, Portugal.

Neurodegenerative diseases like Alzheimer’s remain devastating and without treatment. How can we harness advances in longevity drugs and cellular rejuvenation to develop new therapies?
October 25, 2025 at 12:27 PM
Reposted by Joao Pedro Magalhaes
Reposted by Joao Pedro Magalhaes
PhD studentship available in our lab to study ageing, longevity and cellular rejuvenation using computational methods and machine learning/AI.

Applications are open to UK and international students.

Deadline: 27 November 2025.

www.findaphd.com/phds/project...
Developing and applying computational methods to study ageing and cellular rejuvenation at University of Birmingham on FindAPhD.com
PhD Project - Developing and applying computational methods to study ageing and cellular rejuvenation at University of Birmingham, listed on FindAPhD.com
www.findaphd.com
October 19, 2025 at 7:00 PM
Reposted by Joao Pedro Magalhaes
Aging as a Loss of Goal-Directedness: An Evolutionary Simulation and Analysis Unifying Regeneration with Anatomical Rejuvenation
advanced.onlinelibrary.wiley.com/doi/10.1002/...
Aging as a Loss of Goal‐Directedness: An Evolutionary Simulation and Analysis Unifying Regeneration with Anatomical Rejuvenation
The paper proposes that the root cause of aging is the loss of anatomical goal-directedness after development. Using evolutionary neural cellular automata simulations, the authors show that after the....
advanced.onlinelibrary.wiley.com
October 16, 2025 at 10:36 PM
Reposted by Joao Pedro Magalhaes
Reposted by Joao Pedro Magalhaes
Human Cell Aging Transcriptome Atlas (HCATA): a single-cell atlas of age-associated transcriptomic alterations across human tissues
www.nature.com/articles/s42...
Human Cell Aging Transcriptome Atlas (HCATA): a single-cell atlas of age-associated transcriptomic alterations across human tissues - Communications Biology
The Human Cell Aging Transcriptome Atlas contains single cell RNA-sequencing data from 3,475 human samples and interactive tools to explore age-related alterations in gene expression and go term enrichment in a diverse set of tissues and cell types.
www.nature.com
October 11, 2025 at 11:34 PM
Reposted by Joao Pedro Magalhaes
Ten mouse organs proteome and metabolome atlas from adult to aging
link.springer.com/article/10.1...
Ten mouse organs proteome and metabolome atlas from adult to aging - Genome Medicine
Background Aging is a complex biological process characterized by progressive molecular alterations across multiple organ systems, significantly influencing disease susceptibility and mortality. Unraveling molecular interactions driving aging is crucial for interventions promoting healthy aging and mitigating senescence. However, the systemic mechanisms governing both inter-organ interactions and organ-specific aging trajectories remain incompletely characterized. Methods To investigate the molecular dynamics of aging, we conducted a systematic multi-omics analysis of 400 tissue samples collected from 10 organs (brain, heart, intestine, kidney, liver, lung, muscle, skin, spleen, and stomach) in mice at four distinct life stages: 4, 8, 12, and 20 months (from youth to elderly). Proteomic profiling was performed using data-independent acquisition (DIA) technology, while metabolomic analysis was performed in both positive and negative ion modes. Differential expression analysis of proteins and metabolites was employed to construct a comprehensive multi-organ aging dataset. Results Proteomic profiling across ten organs at four age stages identified a total of 14,763 protein groups (PGs). Of these, 18 proteins, including Ighm, C4b, and Hpx, exhibited consistent age-related differential expression patterns across all ten organs. Functional enrichment analysis highlighted the humoral immune response as a primary driver of age-related expression changes. Additionally, this study mapped a set of age-unique proteins, such as Hp, Egf, and Arg, with distinct expression patterns in aging organs. Metabolic analysis identified 3779 metabolites, with key aging-related metabolites such as NAD+, inosine, xanthine, and hypoxanthine showing significant expression changes across multiple organs. Pathway enrichment analysis revealed consistent alterations in purine metabolism, pyrimidine metabolism, riboflavin metabolism, and nicotinate/nicotinamide metabolism during multi-organ aging. Conclusions This study provides a multi-omics atlas of multi-organ aging, revealing both intra- and inter-organ similarities and heterogeneities. These findings offer valuable insights into the molecular mechanisms underlying geriatric health decline and serve as a foundational resource for organism-systematic early warning and targeted interventions against aging-associated pathologies.
link.springer.com
October 11, 2025 at 12:45 PM
Had a fantastic time speaking at the NEXii Longevity Congress 2025 in my hometown of Porto!

Grateful to be part of this conference exploring how longer, healthier lives will reshape our future.

Big thanks to the organizers and everyone involved 🙏
October 10, 2025 at 4:58 PM
Reposted by Joao Pedro Magalhaes
Overview of molecular signatures of senescence and associated resources: pros and cons
febs.onlinelibrary.wiley.com/doi/10.1002/...
FEBS Press
Cells can enter a stress response state termed cellular senescence that is involved in various diseases and aging. Detecting these cells is challenging due to the lack of universal biomarkers. This r...
febs.onlinelibrary.wiley.com
October 8, 2025 at 5:16 PM
Reposted by Joao Pedro Magalhaes
Aging-TCA: a cross-species single-cell transcriptomic atlas for studying testicular aging
link.springer.com/article/10.1...
Aging-TCA: a cross-species single-cell transcriptomic atlas for studying testicular aging - BMC Genomics
The testis, with the highest number of transcriptionally active genes among human tissues, offers a unique window into how aging affects complex gene regulation. Recent advancements in single-cell RNA sequencing have enabled multi-species studies of aging-related transcriptome changes in testes. However, a comprehensive aging-related cross-species platform for analyzing testicular single-cell transcriptomes remains absent. To address this gap, we developed Aging-TCA (Aging-related Testicular Cell Atlas, available at http://tca.xielab.tech/)— a comprehensive online platform containing aging-related testicular single cell and spatial transcriptome profiles from human, cynomolgus monkey, mouse, and zebrafish across 89 samples and over 460, 000 testicular cells, nuclei or spots. Aging-TCA provides versatile tools for temporal and spatial analyzing testicular aging, including aging-related testicular gene expression visualization, cell-cell communication comparisons, cell-trajectory analysis, gene regulatory network analysis, testicular cell type auto-identification, time-series analysis, and spatial transcriptome comparisons. In summary, we provide a novel platform Aging-TCA for advancing cross-species research into testicular aging, facilitating future investigations in this field.
link.springer.com
October 6, 2025 at 6:38 PM
Dark Prague was the perfect place to talk about longevity and fighting aging.

Aging isn’t natural. It’s legacy code. A software design flaw. And we’re learning how to rewrite it.
October 5, 2025 at 9:43 PM
Reposted by Joao Pedro Magalhaes
Do bats hold the secret to human longevity?
www.youtube.com/watch?v=8HSp...
Do bats hold the secret to human longevity?
YouTube video by RAZOR Science Show
www.youtube.com
October 2, 2025 at 10:06 PM
On this Longevity Day, I questioned the field’s focus on healthspan, argued we need to be more creative and ambitious, and suggested that aging is driven not by molecular damage but by genetic programs.

Had fun at TransVision 2025 in Madrid, though I may not have made many friends 😀
October 1, 2025 at 10:13 PM
Reposted by Joao Pedro Magalhaes
Reposted by Joao Pedro Magalhaes
Supercentenarian gives scientists insight on secrets of healthy old age
www.theguardian.com/science/2025...
Supercentenarian gives scientists insight on secrets of healthy old age
Tests on Maria Branyas Morera, who was world’s oldest person before she died aged 117, gave doctors a trove of discoveries
www.theguardian.com
September 30, 2025 at 9:01 PM