<Joaquin | Barroso>
banner
joaquinbarroso.bsky.social
<Joaquin | Barroso>
@joaquinbarroso.bsky.social
CompChemist. Baseball fanatic. Casual cyclist. Dad. #CompChem -> https://joaquinbarroso.com
I've been struggling with some calculations for a couple of days now only to find the solution in my own blog *sigh*
Should I be glad I made a sort of note for my future self or should I be concerned about getting older?
November 10, 2025 at 8:58 PM
/home/myself/manuscript_submitted be like:

manuscript.docx
manuscript_rev1.docx
manuscript_rev1_comments.docx
manuscript_rev2_notracks.docx
manuscript_rev3_1_final.docx
manuscript_refs1_1_final_final_notracks.pdf
re_manuscript_4_2_3_1_referees_final_comments_annotated.docx
November 3, 2025 at 7:52 PM
Bond Dissociation Energy with Gaussian16

The strength of a chemical bond can be defined as the change in enthalpy when a bond is homolytically broken into two radicals. Bond dissociation energy is thus the measure of the strength of a bond and, while it is temperature dependent, it can be…
Bond Dissociation Energy with Gaussian16
The strength of a chemical bond can be defined as the change in enthalpy when a bond is homolytically broken into two radicals. Bond dissociation energy is thus the measure of the strength of a bond and, while it is temperature dependent, it can be calculated by DFT or ab initio methods. In this tutorial we're going to calculate the C-H bond dissociation energy (BDE) in the methane (CH4) molecule, one of the strongest aliphatic bonds in organic chemistry.
joaquinbarroso.com
October 23, 2025 at 3:00 AM
#IYQ2025 Are the 2 electrons in a covalent bond 'entangled'? I mean, in the sense of 'Einstein's spooky action at distance'. If so, what would that imply for a homolytic cleavage? Would both mol fragments be entangled? Is electron correlation somehow related to that entanglement?
October 13, 2025 at 10:23 PM
Reposted by <Joaquin | Barroso>
Congratulations to this morning's Nobel prize winners. If you'd like to read a little more about one of them - Omar Yaghi - then do check out this recent Q&A we published ahead of his 60th birthday earlier this year. rdcu.be/eJ3vj #ChemNobel2025 #chemsky 🧪
The man of MOFs and more
Nature Reviews Chemistry - Ahead of his 60th birthday, Omar Yaghi discussed his life in science so far and where he believes is the exciting space for future developments.
rdcu.be
October 8, 2025 at 4:01 PM
Si thrilled to finally see Prof. Omar Yaghi getting a most deserved Nobel prize!
Susumu Kitagawa, Richard Robson and Omar Yaghi have won this year’s Nobel Prize in Chemistry for the development of a class of extremely porous materials known as metal-organic frameworks, which can capture and store molecules such as carbon dioxide. #chemsky 🧪
Chemistry Nobel for scientists who developed massively porous ‘super sponge’ materials
Susumu Kitagawa, Richard Robson and Omar Yaghi pioneered the creation of metal-organic frameworks, which can capture and store molecules such as carbon dioxide.
go.nature.com
October 8, 2025 at 5:04 PM
Chemists west of the Atlantic Ocean: Are you in Alfred Nobel’s Good or Naughty list?
Go to bed now.
#ChemNobel
October 8, 2025 at 5:02 AM
How appropriate that this Intl. year of the quantum sciences, the Nobel Prize in Physics is awarded to Macroscopic Quantum Tunneling Effect. Paraphrasing Sabina Hossenfelder: "Thanks to this, we can keep discussing the interpretation of Quantum Mechanics, but now inside a clean room." 🧪
#IYQ2025
October 7, 2025 at 9:45 PM
Fortunately, the news tunneled its way to the recipient.
Fwd: Fwd: “I hope this email finds you well”
October 7, 2025 at 2:46 PM
Reposted by <Joaquin | Barroso>
it's actually not two Nobels for Josephson junctions, just one that tunnelled over a gap of 52 years
October 7, 2025 at 10:02 AM
Reposted by <Joaquin | Barroso>
This is happening in an hour, join me to talk all things #chemnobel
It gets earlier every year... Next Wednesday, join me and an expert panel to discuss who might win the 2025 #ChemNobel. Free to attend.

Date: Wednesday, October 1, 2025
Time: 2–3 PM ET

Register here: lnkd.in/eD8cdWRS
October 1, 2025 at 4:53 PM
Unrecognized potential number 6 in GetPot

Unrecognized potential number 6 in GetPot A rather silly error in Gaussian, but one that seems to be common and to which I haven't found any posted solutions, so here goes mine. This error shows up when reading an external basis set and looks like this…
Unrecognized potential number 6 in GetPot
Unrecognized potential number 6 in GetPot A rather silly error in Gaussian, but one that seems to be common and to which I haven't found any posted solutions, so here goes mine. This error shows up when reading an external basis set and looks like this (color emphasis mine): Rotational constants (GHZ): 0.0492351 0.0073969 0.0065324 Leave Link 202 at Tue Sep 30 16:14:43 2025, MaxMem= 104857600 cpu: 1.5 elap: 0.2 (Enter /tmpu/scunam/7/gaussian-2016.C01/g1/g16/l301.exe) General basis read from cards: (5D, 7F) ====================================================================================================== Pseudopotential Parameters ====================================================================================================== Center Atomic Valence Angular Power Number Number Electrons Momentum of R Exponent Coefficient SO-Coeffient ====================================================================================================== Unrecognized potential number 6 in GetPot.
joaquinbarroso.com
October 1, 2025 at 1:41 AM
#CompChem in the #Postseason be like
September 30, 2025 at 9:21 PM
#ChemNobel season is upon us. Which flavor of chem do you think will be recognized this year?
Comment tour top picks.

Phys/Theo
Org
Inorg
Med/Bio
September 24, 2025 at 3:01 PM
La pasión por la ciencia nunca le cupo en el pecho. Por eso la derramó sobre todos los que la conocimos. DEP Dra. Julieta Fierro Gossman
Julieta Fierro: "La ciencia nos demuestra que no tenemos la verdad"
YouTube video by Aprendemos juntos Mex
youtu.be
September 19, 2025 at 7:47 PM
Fui invitado a Sensacional de Científicos para hablar sobre el año de las Ciencias Cuánticas
Véanlo completo en YouTube o escúchenlo en su podcasteria favorita
YouTube: youtu.be/2Mul2CMUJLk
Spotify: shorturl.at/fQLZb
Apple Podcasts: shorturl.at/CwKpf
August 30, 2025 at 7:16 PM
Using DensToolKitViewer to get the best viewpoint

In this tutorial, we shall prepare a figure using DensToolKitViewer 2.1.0 (or later) to select the viewing angle of the molecule, for whenever the default view isn't the optimal viewpoint or to get various for comparison. Installation and main…
Using DensToolKitViewer to get the best viewpoint
In this tutorial, we shall prepare a figure using DensToolKitViewer 2.1.0 (or later) to select the viewing angle of the molecule, for whenever the default view isn't the optimal viewpoint or to get various for comparison. Installation and main controls were already covered in a previous post, as well as an update for ease of use. We use the file&hellip;
joaquinbarroso.com
August 27, 2025 at 3:01 PM
Installing and uninstallng DensToolKitViewer

The new DensToolKitViewer just got even better! So, if you want to update DTKViewer to make the most of the new features, in this tutorial we shall compile and install DensToolKitViewer. We provide the explicit steps to compile under Ubuntu and under…
Installing and uninstallng DensToolKitViewer
The new DensToolKitViewer just got even better! So, if you want to update DTKViewer to make the most of the new features, in this tutorial we shall compile and install DensToolKitViewer. We provide the explicit steps to compile under Ubuntu and under MacOSX. We will assume that the git repo is cloned in /home/your_username/Downloads. For this, execute the following commands&hellip;
joaquinbarroso.com
August 25, 2025 at 8:50 PM
We think of #quantum entanglement as exotic, but from a bottom-up perspective it's the rule. What if the exotic thing is the classical limit, where this network of correlations collapses? Is our reality the true exotic thing?
#IYQ2025 #QuantumMechanics
August 21, 2025 at 12:54 AM
Wouldn't Thermodynamics guarantee that if someone is hotter than me, I'm cooler than them? 🤔
August 20, 2025 at 12:11 AM
30 years ago today I got into chemistry school at UNAM. It’s been 30 years in which I’ve thought about atoms and molecules every single day. It’s been a great thirty years and here’s to thirty more.
August 15, 2025 at 3:20 PM
Something becomes canon in Academia when you no longer need to cite the original source, i.e. Newton's laws. That said, DFT theorems (and the most popular functionals for that matter) are canon, right? Right? Here's looking at you #reviewer2. #CompChem #ProfLife
August 11, 2025 at 7:13 PM
Getting Images with DensToolKitViewer2.0 – AIM with DTK2.0

Preparing publication quality images from your calculations is essential. To pre-visualize images to get the best orientations of your molecule, DTK2.0 includes two options: a new GUI called DensToolKitViewer and DTKQDMol. To install…
Getting Images with DensToolKitViewer2.0 – AIM with DTK2.0
Preparing publication quality images from your calculations is essential. To pre-visualize images to get the best orientations of your molecule, DTK2.0 includes two options: a new GUI called DensToolKitViewer and DTKQDMol. To install DensToolKitViewer, you need CMake and the QT-5 libraries all of which you can install in the following way (Ubuntu): ~$sudo apt install -y qtbase5-dev qt5-qmake cmake freeglut3-dev qtdeclarative5-dev ~$cd /path-to-denstoolkit/src/dtkview ~$mkdir build ~$cd build ~$cmake ..
joaquinbarroso.com
June 26, 2025 at 11:00 AM
This is the first post of a new tutorial series on working with DensToolKit (DTK) for analyzing electron density through various scalar fields.
In this post, installation and NCI plotting. Stay tuned for more!

#CompChem #DTK #DensToolKit
DensToolKit 2.0 (DTK) is now available!
DensToolKit2 is a versatile open-source, cross-platform, suite of programs for analyzing electronic densities calculated from various sources and getting cool plots for some of the most popular sca…
joaquinbarroso.com
June 18, 2025 at 5:28 PM