Jasmine Plummer
@jasmineplummer.bsky.social
#Genetics #neuroscience #cancer #singlecell #spatial #omics #datascience investigator, #STEM advocator, #fosteryouth protector, #wife #mom of 2 delicious daughters, views my own
Join us to the last #GESTALT seminar the year!
Free for all GESTALT member. If you are interested in anything #spatialbiology come be part of our growing community
GESTALT Seminar Series globalspatial.org/seminar-seri...
December 19 10am EST @ioavlachos.bsky.social @lgmartelotto.bsky.social
Free for all GESTALT member. If you are interested in anything #spatialbiology come be part of our growing community
GESTALT Seminar Series globalspatial.org/seminar-seri...
December 19 10am EST @ioavlachos.bsky.social @lgmartelotto.bsky.social
Seminar Series – GESTALT – Global Alliance for Spatial Technologies
globalspatial.org
December 9, 2025 at 10:02 PM
Join us to the last #GESTALT seminar the year!
Free for all GESTALT member. If you are interested in anything #spatialbiology come be part of our growing community
GESTALT Seminar Series globalspatial.org/seminar-seri...
December 19 10am EST @ioavlachos.bsky.social @lgmartelotto.bsky.social
Free for all GESTALT member. If you are interested in anything #spatialbiology come be part of our growing community
GESTALT Seminar Series globalspatial.org/seminar-seri...
December 19 10am EST @ioavlachos.bsky.social @lgmartelotto.bsky.social
Thanks @natbiotech.nature.com for the shoutout and supporting our work at attempting QC in this emerging field of #spatial #transcriptomics @lgmartelotto.bsky.social @christophermason.bsky.social
Spatial Touchstone brings quality control to spatial transcriptomics #NBTintheNews via @stjuderesearch.bsky.social www.stjude.org/media-resour...
Spatial Touchstone brings quality control to spatial transcriptomics
Explore Spatial Touchstone’s open-source tools and data for standardized spatial transcriptomics, enabling reliable, cross-institutional gene expression analysis.
www.stjude.org
December 5, 2025 at 10:55 PM
Thanks @natbiotech.nature.com for the shoutout and supporting our work at attempting QC in this emerging field of #spatial #transcriptomics @lgmartelotto.bsky.social @christophermason.bsky.social
Reposted by Jasmine Plummer
Spatial Touchstone brings quality control to spatial transcriptomics #NBTintheNews via @stjuderesearch.bsky.social www.stjude.org/media-resour...
Spatial Touchstone brings quality control to spatial transcriptomics
Explore Spatial Touchstone’s open-source tools and data for standardized spatial transcriptomics, enabling reliable, cross-institutional gene expression analysis.
www.stjude.org
December 4, 2025 at 9:39 PM
Spatial Touchstone brings quality control to spatial transcriptomics #NBTintheNews via @stjuderesearch.bsky.social www.stjude.org/media-resour...
Reposted by Jasmine Plummer
The Spatial Touchstone resource provides a robust, open-source repository for the field and enables researchers to assess the quality of their own spatial transcriptomics datasets and compare results across institutions.
December 3, 2025 at 3:00 PM
The Spatial Touchstone resource provides a robust, open-source repository for the field and enables researchers to assess the quality of their own spatial transcriptomics datasets and compare results across institutions.
Reposted by Jasmine Plummer
@jasmineplummer.bsky.social, PhD, said: “The project started because I was frustrated with the field lacking quality metrics. Other technologies have established baseline expectations using set cell lines to tell if variation is due to the sample, machine or technician.”
December 3, 2025 at 3:00 PM
@jasmineplummer.bsky.social, PhD, said: “The project started because I was frustrated with the field lacking quality metrics. Other technologies have established baseline expectations using set cell lines to tell if variation is due to the sample, machine or technician.”
Reposted by Jasmine Plummer
Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets - @jasmineplummer.bsky.social @lgmartelotto.bsky.social go.nature.com/4rBC1Z0
Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets - Nature Biotechnology
A multi-institute, multi-platform initiative generates standard metrics and best practices for spatial transcriptomics analysis.
go.nature.com
December 3, 2025 at 7:58 PM
Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets - @jasmineplummer.bsky.social @lgmartelotto.bsky.social go.nature.com/4rBC1Z0
Goliath effort to help with standards in spatial trancriptomics-can only be more amazing when done with @lgmartelotto.bsky.social @christophermason.bsky.social 🚀
Paper: nature.com/articles/s4158…
Touchstone portal: spatialtouchstone.org
Spatial touchstone protocols: protocols.io/view/spatial-t���
Paper: nature.com/articles/s4158…
Touchstone portal: spatialtouchstone.org
Spatial touchstone protocols: protocols.io/view/spatial-t���
December 3, 2025 at 10:27 PM
Goliath effort to help with standards in spatial trancriptomics-can only be more amazing when done with @lgmartelotto.bsky.social @christophermason.bsky.social 🚀
Paper: nature.com/articles/s4158…
Touchstone portal: spatialtouchstone.org
Spatial touchstone protocols: protocols.io/view/spatial-t���
Paper: nature.com/articles/s4158…
Touchstone portal: spatialtouchstone.org
Spatial touchstone protocols: protocols.io/view/spatial-t���
Reposted by Jasmine Plummer
Our 2025 Workshop, “Leveraging the Power of Artificial Intelligence to Foster Progress in Immuno-oncology..." educated the IO community to develop new cancer immunotherapies and improve patient care with AI. @jasmineplummer.bsky.social @aruthak.bsky.social @fertiglab.bsky.social @dinler.bsky.social
November 6, 2025 at 10:10 PM
Our 2025 Workshop, “Leveraging the Power of Artificial Intelligence to Foster Progress in Immuno-oncology..." educated the IO community to develop new cancer immunotherapies and improve patient care with AI. @jasmineplummer.bsky.social @aruthak.bsky.social @fertiglab.bsky.social @dinler.bsky.social
Counting my lucky stars⭐️that not only do I get to work with these amazing scientists Jiwoon Park @christophermason.bsky.social but also give fun @cshlnews.bsky.social lectures together💪.Big thank you to @lgmartelotto.bsky.social Nicholas Navin Julea Vlassakis for uniting this #singlecell #dreamteam
July 17, 2025 at 3:46 PM
Counting my lucky stars⭐️that not only do I get to work with these amazing scientists Jiwoon Park @christophermason.bsky.social but also give fun @cshlnews.bsky.social lectures together💪.Big thank you to @lgmartelotto.bsky.social Nicholas Navin Julea Vlassakis for uniting this #singlecell #dreamteam
STAMP:Single cell Transcriptomics Analysis & Multimodal Profiling-cheap scprofiling-MILLIONS of cells, multimodal, pertubation expts & tissue atlas'ing at scale.Thx to brilliant colleagues @lgmartelotto.bsky.social Holger Heyn & our amazing teams. @cellpress.bsky.social www.cell.com/cell/abstrac...
“STAMP allows us to profile a million cells simultaneously, compared to tens of thousands typical of current methods, making it far more scalable,” said @jasmineplummer.bsky.social, PhD, St. Jude Center for Spatial Omics director.
June 17, 2025 at 9:47 PM
STAMP:Single cell Transcriptomics Analysis & Multimodal Profiling-cheap scprofiling-MILLIONS of cells, multimodal, pertubation expts & tissue atlas'ing at scale.Thx to brilliant colleagues @lgmartelotto.bsky.social Holger Heyn & our amazing teams. @cellpress.bsky.social www.cell.com/cell/abstrac...
Reposted by Jasmine Plummer
“STAMP allows us to profile a million cells simultaneously, compared to tens of thousands typical of current methods, making it far more scalable,” said @jasmineplummer.bsky.social, PhD, St. Jude Center for Spatial Omics director.
June 17, 2025 at 3:01 PM
“STAMP allows us to profile a million cells simultaneously, compared to tens of thousands typical of current methods, making it far more scalable,” said @jasmineplummer.bsky.social, PhD, St. Jude Center for Spatial Omics director.
Reposted by Jasmine Plummer
👩🔬The lead authors of the study are Dr. @pascual-reguant.bsky.social & Emanuele Pitino (CNAG) with Felipe Segato Dezem (@stjuderesearch.bsky.social)
Corresponding authors: Dr. @hoheyn.bsky.social (CNAG), Dr. @jasmineplummer.bsky.social (St. Jude) & Dr. @lgmartelotto.bsky.social (Univ. of Adelaide)
Corresponding authors: Dr. @hoheyn.bsky.social (CNAG), Dr. @jasmineplummer.bsky.social (St. Jude) & Dr. @lgmartelotto.bsky.social (Univ. of Adelaide)
June 17, 2025 at 3:39 PM
👩🔬The lead authors of the study are Dr. @pascual-reguant.bsky.social & Emanuele Pitino (CNAG) with Felipe Segato Dezem (@stjuderesearch.bsky.social)
Corresponding authors: Dr. @hoheyn.bsky.social (CNAG), Dr. @jasmineplummer.bsky.social (St. Jude) & Dr. @lgmartelotto.bsky.social (Univ. of Adelaide)
Corresponding authors: Dr. @hoheyn.bsky.social (CNAG), Dr. @jasmineplummer.bsky.social (St. Jude) & Dr. @lgmartelotto.bsky.social (Univ. of Adelaide)
Webinar (June 3, 8am PDT) on using single-cell to better understand complex biology. If you're new to the field or already an expert, there’ll be a little of something for everyone. Free registration link: www.technologynetworks.com/tn/webinars/...
#singlecell #analysis #transcriptomic #omics
#singlecell #analysis #transcriptomic #omics
May 31, 2025 at 11:11 PM
Webinar (June 3, 8am PDT) on using single-cell to better understand complex biology. If you're new to the field or already an expert, there’ll be a little of something for everyone. Free registration link: www.technologynetworks.com/tn/webinars/...
#singlecell #analysis #transcriptomic #omics
#singlecell #analysis #transcriptomic #omics
Reposted by Jasmine Plummer
Latest news feature in @natbiotech.nature.com on recent developments in spatial biology to unravel disease mechanisms, with insights from experts in field. @aruthak.bsky.social @nebanovich.bsky.social @ai4pathology.bsky.social @jasmineplummer.bsky.social www.nature.com/articles/s41...
Beyond cell atlases: spatial biology reveals mechanisms behind disease - Nature Biotechnology
As the next generation of spatial transcriptomics tools hits the market, researchers are uncovering previously unknown interactions that could transform clinical research.
www.nature.com
May 21, 2025 at 12:51 PM
Latest news feature in @natbiotech.nature.com on recent developments in spatial biology to unravel disease mechanisms, with insights from experts in field. @aruthak.bsky.social @nebanovich.bsky.social @ai4pathology.bsky.social @jasmineplummer.bsky.social www.nature.com/articles/s41...
Reposted by Jasmine Plummer
Are you interested in learning about the intersection of #AI and molecular #biology? Come to our @keystonesymposia.bsky.social this September in beautiful Santa Fe! keysym.us/KSAIBio26 #KSAIBio26
Scholarship + short talk deadline May 20 so apply soon! Look forward to seeing you there!
#AcademicSky
Scholarship + short talk deadline May 20 so apply soon! Look forward to seeing you there!
#AcademicSky
April 28, 2025 at 12:29 AM
Are you interested in learning about the intersection of #AI and molecular #biology? Come to our @keystonesymposia.bsky.social this September in beautiful Santa Fe! keysym.us/KSAIBio26 #KSAIBio26
Scholarship + short talk deadline May 20 so apply soon! Look forward to seeing you there!
#AcademicSky
Scholarship + short talk deadline May 20 so apply soon! Look forward to seeing you there!
#AcademicSky
Reposted by Jasmine Plummer
Single-cell profiling of the human endometrium in polycystic ovary syndrome. #NatureMedicine
This study presents a comprehensive cellular atlas of the endometrium during the proliferative phase, comparing women with PCOS to healthy controls.
www.nature.com/articles/s41...
This study presents a comprehensive cellular atlas of the endometrium during the proliferative phase, comparing women with PCOS to healthy controls.
www.nature.com/articles/s41...
Single-cell profiling of the human endometrium in polycystic ovary syndrome - Nature Medicine
A transcriptomic atlas of the endometrium of women with polycystic ovary syndrome uncovers both disease signatures and potential therapeutic targets.
www.nature.com
March 25, 2025 at 5:48 AM
Single-cell profiling of the human endometrium in polycystic ovary syndrome. #NatureMedicine
This study presents a comprehensive cellular atlas of the endometrium during the proliferative phase, comparing women with PCOS to healthy controls.
www.nature.com/articles/s41...
This study presents a comprehensive cellular atlas of the endometrium during the proliferative phase, comparing women with PCOS to healthy controls.
www.nature.com/articles/s41...
Reposted by Jasmine Plummer
Deconvoluting single-cell transcriptomics reveals cellular programs regulated by cell-cell communication in colorectal cancer https://www.biorxiv.org/content/10.1101/2025.04.09.648030v1
April 15, 2025 at 11:53 PM
Deconvoluting single-cell transcriptomics reveals cellular programs regulated by cell-cell communication in colorectal cancer https://www.biorxiv.org/content/10.1101/2025.04.09.648030v1
Reposted by Jasmine Plummer
Spatial transcriptomics AI agent charts hPSC-pancreas maturation in vivo https://www.biorxiv.org/content/10.1101/2025.04.01.646731v1
April 4, 2025 at 8:33 PM
Spatial transcriptomics AI agent charts hPSC-pancreas maturation in vivo https://www.biorxiv.org/content/10.1101/2025.04.01.646731v1
Reposted by Jasmine Plummer
Single-Cell Multiomics Reveals Regulatory Mechanisms of CAR T Cell Persistence and Dysfunction in Multiple Myeloma https://www.biorxiv.org/content/10.1101/2025.04.01.646378v1
April 6, 2025 at 12:34 PM
Single-Cell Multiomics Reveals Regulatory Mechanisms of CAR T Cell Persistence and Dysfunction in Multiple Myeloma https://www.biorxiv.org/content/10.1101/2025.04.01.646378v1
Reposted by Jasmine Plummer
Integrated single-cell and spatial multiomic analysis reveals widespread reactivation of developmental programs in diseased human hearts https://www.biorxiv.org/content/10.1101/2025.04.01.646460v1
April 7, 2025 at 12:33 PM
Integrated single-cell and spatial multiomic analysis reveals widespread reactivation of developmental programs in diseased human hearts https://www.biorxiv.org/content/10.1101/2025.04.01.646460v1
Reposted by Jasmine Plummer
scContrast: A contrastive learning based approach for encoding single-cell gene expression data https://www.biorxiv.org/content/10.1101/2025.04.07.647292v1
April 14, 2025 at 8:32 AM
scContrast: A contrastive learning based approach for encoding single-cell gene expression data https://www.biorxiv.org/content/10.1101/2025.04.07.647292v1
Reposted by Jasmine Plummer
🔥New Night Science paper!!
Discovery happens when your initial plans fall apart but it requires you to have a particular mindset: it's not extraverted, orderly, neurotic or agreeable that's the most important – discovery requires an OPENNESS to new ideas and unexpected insights.
Discovery happens when your initial plans fall apart but it requires you to have a particular mindset: it's not extraverted, orderly, neurotic or agreeable that's the most important – discovery requires an OPENNESS to new ideas and unexpected insights.
April 2, 2025 at 11:28 AM
🔥New Night Science paper!!
Discovery happens when your initial plans fall apart but it requires you to have a particular mindset: it's not extraverted, orderly, neurotic or agreeable that's the most important – discovery requires an OPENNESS to new ideas and unexpected insights.
Discovery happens when your initial plans fall apart but it requires you to have a particular mindset: it's not extraverted, orderly, neurotic or agreeable that's the most important – discovery requires an OPENNESS to new ideas and unexpected insights.
Reposted by Jasmine Plummer
CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data www.nature.com/articles/s4...
CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data
Nature Protocols - CellPhoneDB combines a curated database of receptor–ligand interactions with methods to infer cell–cell communication from single-cell expression data. This protocol...
www.nature.com
April 3, 2025 at 1:45 PM
CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data www.nature.com/articles/s4...
Reposted by Jasmine Plummer
Leveraging real-world data to advance biomarker discovery and precision oncology www.cell.com/cancer-cell...
April 4, 2025 at 2:15 PM
Leveraging real-world data to advance biomarker discovery and precision oncology www.cell.com/cancer-cell...
Best day of the yearfor all single cell lovers and it’s free!!! satijalab.org/scgd25/ hosted by the Satija lab -Single Cell Genomics Day on Friday, April 25, 2025.
April 2, 2025 at 1:34 AM
Best day of the yearfor all single cell lovers and it’s free!!! satijalab.org/scgd25/ hosted by the Satija lab -Single Cell Genomics Day on Friday, April 25, 2025.