Jalal Uddin
jalal228.bsky.social
Jalal Uddin
@jalal228.bsky.social
Postdoc at Yale University 🇺🇸
Ph.D., UiT 🇳🇴 Visiting Ph.D., UMC Utrecht 🇳🇱
M.Sc., Kangwon National University 🇰🇷
B.Sc., Microbiology, JU 🇧🇩 ❤️
Interested in studying gastrointestinal infections using chemical tools
Reposted by Jalal Uddin
How can we study target engagement and selectivity of covalent inhibitors? Which electrophilic probes are best suited to study a certain amino acid?

Our study on "Profiling the proteome-wide selectivity of diverse electrophiles" is published in Nature Chemistry.(1/7)

www.nature.com/articles/s41...
Profiling the proteome-wide selectivity of diverse electrophiles - Nature Chemistry
Covalent inhibitors are powerful entities in drug discovery. Now the amino acid selectivity and reactivity of a diverse electrophile library have been assessed proteome-wide using an unbiased workflow...
www.nature.com
October 30, 2025 at 10:27 AM
Reposted by Jalal Uddin
After a long journey and much hard work from many talented scientists, our paper is finally out. Take a look if you are interested in proteases and host microbe interactions in the gut. www.cell.com/cell-host-mi...
A Bacteroides fragilis protease activates host PAR2 to induce intestinal pain and inflammation
Lakemeyer and colleagues analyze the secretome of gut bacteria to identify factors that target host PAR2. They find that the Bacteroides fragilis protease Bfp1 cleaves and activates PAR2, disrupting i...
www.cell.com
September 26, 2025 at 6:02 PM
Reposted by Jalal Uddin
Last chance for early registration for the 2025 Chemical Biology & Physiology Symposium (Dec. 11-13 in Portland, Oregon, USA). Register here:
www.ohsu.edu/school-of-me...
Great program, including talks by Carasco, Chang, Bogyo, Baskin, Swarts, Sampson, Sletten, Dodani, Francis, Urano, Gibbs, etc.
Chemical Biology and Physiology 2025 | OHSU
Chemical Biology and Physiology Conference 2025, December 11-13, 2025
www.ohsu.edu
September 15, 2025 at 11:42 PM
Reposted by Jalal Uddin
Great collaboration with @derda_lab @RatmirDerda just posted to bioRxiv. Check out how to best incorporate electrophiles into cyclic peptides to generate covalent inhibitors. www.biorxiv.org/content/10.1...
A Two-Step Synthesis of Covalent Genetically-Encoded Libraries of Peptide-Derived Macrocycles (cGELs) enables use of electrophiles with diverse reactivity
Genetically-encoded libraries of peptide-derived macrocycles containing electrophile "warheads" (cGELs) can be used to identify potent and selective covalent ligands for protein targets. Such cGELs ar...
www.biorxiv.org
August 29, 2025 at 4:18 AM
Reposted by Jalal Uddin
Congrats to postdoc Zhe Zhou on her paper out today in @cp-cellhostmicrobe.bsky.social showing that gut bacteria cross-feed a common dietary antioxidant to produce energy under anaerobic conditions. Thanks to collaborators Angela Jiang and Xiaofang Jiang at NIH.
www.sciencedirect.com/science/arti...
August 4, 2025 at 6:55 PM
Reposted by Jalal Uddin
An inspiring paper by the group of Jacob Geri in Analytical Chemistry. They present a method for residue-specific #chemoproteomics without the need for an enrichment step. To achieve this, they developed reagents that shift the ion mobility for gas phase separation. pubs.acs.org/doi/full/10....
Gas Phase Separation of Modified Peptides for Activity-Based Protein Profiling
Profiling the reactivity of the proteome with amino-acid level resolution requires the identification and quantification of reacted peptides in the presence of abundant unmodified peptides. Affinity-b...
pubs.acs.org
July 24, 2025 at 12:04 PM
Reposted by Jalal Uddin
A new exciting article in @natbiotech.nature.com highlights the power of chemical proteomics to find druggable pockets on difficult high-value targets. Great insights into applications in covalent and non-covalent drug discovery including clinical development. (1/5) www.nature.com/articles/s41...
Probing the proteome - Nature Biotechnology
Chemical proteomics has brought rigor to covalent drug discovery and drugs to the clinic. Can it deliver a new generation of drug targets?
www.nature.com
July 2, 2025 at 8:36 AM
Congratulations to Dr. Stavroula Hatzios on this well-deserved recognition! 👏
Thanks to the Bodossaki Foundation 🇬🇷 for a great night celebrating the achievements of Greek scientists. Congratulations to all of the honorees and to the students and postdocs who contributed to our work!
June 20, 2025 at 2:59 AM
Pleased to share our lab-optimized chapter in Methods in Molecular Biology: “Activity-Based Protein Profiling of Serine Hydrolases in Bacteria.” Thanks to @christianslentz.bsky.social .
doi.org/10.1007/978-...
Activity-Based Protein Profiling of Serine Hydrolases in Bacteria: Methods and Protocols
Activity-based protein profiling (ABPP) is a chemoproteomic technique that uses functionalized covalent enzyme inhibitors known as activity-based probes (ABPs) to detect, quantify, and identify active...
doi.org
June 17, 2025 at 3:40 PM
Reposted by Jalal Uddin
Our work identifying new covalent inhibitors of Staphylococcus aureus serine hydrolyses from fragment libraries is out! great work from @tulsiupadhyay.bsky.social and our many collaborators, including @christianslentz.bsky.social, @mfellnerlab.bsky.social. #chembio
link.springer.com/article/10.1...
Identification of covalent inhibitors of Staphylococcus aureus serine hydrolases important for virulence and biofilm formation - Nature Communications
Staphylococcus aureus is a leading cause of bacteria-associated mortality worldwide. New tools are needed to both image and treat this pathogen. We previously identified a group of S. aureus serine hy...
link.springer.com
May 30, 2025 at 9:55 PM
Reposted by Jalal Uddin
If you are interested in lipids in bacteria, check out this awesome new review written by my talented student Alyssa Carter, super postdoc Emily Woods and me. #chembio
www.sciencedirect.com/science/arti...
Chemical strategies for targeting lipid pathways in bacterial pathogens
Microbial pathogens continue to plague human health and develop resistance to our current frontline treatments. Over the last few decades, there has b…
www.sciencedirect.com
April 19, 2025 at 10:22 PM
Reposted by Jalal Uddin
Excited to report our studies that identified a new serine protease secreted by the gut microbe Bacteroides fragilis that regulates pain and inflammation through PAR2 activation. #ChemBio. Check it out!https://www.biorxiv.org/content/10.1101/2025.01.15.633241v1
Identification of a secreted protease from Bacteroides fragilis that induces intestinal pain and inflammation by cleavage of PAR2
Protease-activated receptor 2 (PAR2) is a central regulator of intestinal barrier function, inflammation and pain. Upregulated intestinal proteolysis and PAR2-signaling are implicated in inflammatory ...
www.biorxiv.org
January 16, 2025 at 5:11 PM
Thanks a lot @monaj66.bsky.social 😊
February 11, 2025 at 8:53 PM
Our paper. Thanks a lot @christianslentz.bsky.social 😊
February 11, 2025 at 10:47 AM