UPENN_ITMAT
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itmat.bsky.social
UPENN_ITMAT
@itmat.bsky.social
ITMAT was launched formally in January 2005; the first Institute of Translational Medicine And Therapeutics in the world.
November 11, 2025 at 6:58 PM
#Epigenetics profiling of C57BL/6 J mice across 29 tissues, both sexes, age range of 8–76 weeks for population-scale analysis doi.org/10.1186/s130... @SolmoeLee @KohliLab @zhouwanding.bsky.social #Methylome #Aging #TranslationalScience
A ternary-code DNA methylome atlas of mouse tissues - Genome Biology
Background DNA cytosine modifications, including 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC), are key epigenetic regulators with distinct functions. Dissecting the ternary code (C, 5mC, 5hmC) across tissues and cell types remains a critical priority due to the limitations of traditional profiling methods based on bisulfite conversion. Results Here, we leverage the combined bisulfite and enzymatic (bACE) conversion with the Mouse Methylation BeadChip to generate 265 base-resolution ternary-code modification maps of 5mC and 5hmC across 29 mouse tissue types spanning 8–76 weeks of age and both sexes. Our atlas reveals a complex grammar of 5hmC distribution, jointly shaped by cell mitotic activity, chromatin states, and interplay with 5mC at the same and neighboring CpG sites. Of note, we demonstrate that 5hmC significantly complements 5mC-based biomarkers in delineating cell identity in both brain and non-brain tissues. Each modification state, including 5hmC alone, accurately discriminates tissue types, enabling high-precision machine learning classification of epigenetic identity. Furthermore, the ternary methylome variations extensively implicate gene transcriptional variation, with age-related changes correlated with gene expression in a tissue-dependent manner. Conclusions Our work reveals how tissue, sex, and age jointly govern the dynamics of the two cytosine modifications, augments the scope of DNA modification biomarker discovery, and provides a reference atlas to explore epigenetic dynamics in development and disease.
doi.org
October 9, 2025 at 4:06 PM
How is #BrainDevelopment linked to the emergence of #MentalHealthDisorders? Harmonizing & sharing #Neuroimaging data & well-defined psychiatric phenotypes are essential building blocks to pursue answers: doi.org/10.1016/j.ne... @sattertt @pennlinc.bsky.social #TranslationalScience
Redirecting
doi.org
September 25, 2025 at 5:17 PM
Mechanistic insight into #BowelDisease: Mechanically stressed intestinal smooth muscle cells alter #GeneTranscription towards #Inflammation insight.jci.org/articles/vie... @HeoLab #MechanoBiology #InflammatoryBowelDisease #Chrons #Colitis #TranslationalScience
JCI Insight - Rapid cyclic stretching of cultured human visceral smooth muscle cells promotes a synthetic, proinflammatory phenotype
insight.jci.org
September 18, 2025 at 7:45 PM
Igf2/H19 locus as instructive model to study how allele-specific #GenomeArchitecture facilitates enhancer-promoter interaction that dictate tissue-specific #GeneExpression in #SkeletalMuscle doi.org/10.1371/jour... @Marisa_S_B #TranslationalScience
Igf2 adult-specific skeletal muscle enhancer activity revealed in mice with intergenic CTCF boundary deletion
Author summary All mammals have a unique class of genes that are crucial for normal growth, known as “imprinted genes,” where only one gene copy inherited from a parent is active. Imprinted genes are ...
doi.org
September 2, 2025 at 6:22 PM
August 26, 2025 at 5:50 PM
#Epigenetics modulation of the topography of #AlzheimerDisease pathology linked to #AtypicalAD presentations doi.org/10.1016/j.ne... #Aging @alzassociation @AlzSocResearch @TheADDF #Alzheimers #Dementia #MentalHealth #Brain #TranslationalScience
Redirecting
doi.org
August 21, 2025 at 1:49 PM