Hamidreza Ghafouri
@hamidrgh.bsky.social
PhD student @Biocomputing UP lab @University of Padova-Italy 🇮🇹
Research IDPs , Conformational ensembles🍝
Do you have ensembles to deposit in PED?
Don’t hesitate to reach out and share your valuable data with the community
Proteinensemble.org
Research IDPs , Conformational ensembles🍝
Do you have ensembles to deposit in PED?
Don’t hesitate to reach out and share your valuable data with the community
Proteinensemble.org
🚀 New Preprint Alert!
We’re excited to share our latest work on a community-driven framework for determining conformational ensembles of intrinsically disordered proteins (IDPs) — now available as a preprint on arXiv!
📄 Read the full preprint here: [ arxiv.org/abs/2504.03590 ]
We’re excited to share our latest work on a community-driven framework for determining conformational ensembles of intrinsically disordered proteins (IDPs) — now available as a preprint on arXiv!
📄 Read the full preprint here: [ arxiv.org/abs/2504.03590 ]
April 7, 2025 at 9:08 AM
🚀 New Preprint Alert!
We’re excited to share our latest work on a community-driven framework for determining conformational ensembles of intrinsically disordered proteins (IDPs) — now available as a preprint on arXiv!
📄 Read the full preprint here: [ arxiv.org/abs/2504.03590 ]
We’re excited to share our latest work on a community-driven framework for determining conformational ensembles of intrinsically disordered proteins (IDPs) — now available as a preprint on arXiv!
📄 Read the full preprint here: [ arxiv.org/abs/2504.03590 ]
Reposted by Hamidreza Ghafouri
Supervised training using data generated by multiplexed assays of variant effects is potentially very powerful, but is made difficult by assay- and protein-specific effects
Here @tkschulze.bsky.social devised a strategy to take this into account while training models
www.biorxiv.org/content/10.1...
Here @tkschulze.bsky.social devised a strategy to take this into account while training models
www.biorxiv.org/content/10.1...
April 3, 2025 at 3:03 AM
Supervised training using data generated by multiplexed assays of variant effects is potentially very powerful, but is made difficult by assay- and protein-specific effects
Here @tkschulze.bsky.social devised a strategy to take this into account while training models
www.biorxiv.org/content/10.1...
Here @tkschulze.bsky.social devised a strategy to take this into account while training models
www.biorxiv.org/content/10.1...
Reposted by Hamidreza Ghafouri
Announcing the joint IDPSeminars / BPS IDP Subgroup Trainee Symposium Speakers!
Join us on Mar 27, 12–2pm CST for 6 exciting talks focused on Intrinsically Disordered Proteins as part of #BophysicsWeek2025 with the @biophysicalsoc.bsky.social
Sign up now at docs.google.com/forms/d/1L_K...
Join us on Mar 27, 12–2pm CST for 6 exciting talks focused on Intrinsically Disordered Proteins as part of #BophysicsWeek2025 with the @biophysicalsoc.bsky.social
Sign up now at docs.google.com/forms/d/1L_K...
March 17, 2025 at 4:14 PM
Announcing the joint IDPSeminars / BPS IDP Subgroup Trainee Symposium Speakers!
Join us on Mar 27, 12–2pm CST for 6 exciting talks focused on Intrinsically Disordered Proteins as part of #BophysicsWeek2025 with the @biophysicalsoc.bsky.social
Sign up now at docs.google.com/forms/d/1L_K...
Join us on Mar 27, 12–2pm CST for 6 exciting talks focused on Intrinsically Disordered Proteins as part of #BophysicsWeek2025 with the @biophysicalsoc.bsky.social
Sign up now at docs.google.com/forms/d/1L_K...
Reposted by Hamidreza Ghafouri
Today we have published BioEmu-Benchmarks (MIT license): a code to evaluate the multi-conformation sampling benchmarks, MD free energy landscape benchmarks, and folding free energy benchmarks shown in the BioEmu-1 paper with BioEmu or your own model. Some details below 🧵
github.com/microsoft/bi...
github.com/microsoft/bi...
GitHub - microsoft/bioemu-benchmarks: Benchmarking code accompanying the release of `bioemu`
Benchmarking code accompanying the release of `bioemu` - microsoft/bioemu-benchmarks
github.com
February 21, 2025 at 3:49 PM
Today we have published BioEmu-Benchmarks (MIT license): a code to evaluate the multi-conformation sampling benchmarks, MD free energy landscape benchmarks, and folding free energy benchmarks shown in the BioEmu-1 paper with BioEmu or your own model. Some details below 🧵
github.com/microsoft/bi...
github.com/microsoft/bi...
Reposted by Hamidreza Ghafouri
The answer is yes! Come hear about STARLING this afternoon at the Biophysical Society IDP subgroup symposium!
Thread to follow later today...
www.biorxiv.org/content/10.1...
Thread to follow later today...
www.biorxiv.org/content/10.1...
February 15, 2025 at 5:23 PM
The answer is yes! Come hear about STARLING this afternoon at the Biophysical Society IDP subgroup symposium!
Thread to follow later today...
www.biorxiv.org/content/10.1...
Thread to follow later today...
www.biorxiv.org/content/10.1...