Frederic Lemoine
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fredlem.bsky.social
Frederic Lemoine
@fredlem.bsky.social
Bioinformatics Scientist @pasteur.fr , #virus, #sequencing, #phylogeny, #bioinformatics
Reposted by Frederic Lemoine
Le Monde se fait l'écho de l'activité du Réseau de recherche reproductible, que nous finançons dans le cadre de la politique de science ouverte. Intéressant de voir que ces sujets peuvent être exposés un large public.
🔬♻️ « Quand la science s’amuse à se reproduire »
Merci à @lemonde.fr et à David Larousserie pour la mise en lumière des #ReplicationGames du 3 octobre, co-organisés par le Réseau Français de la Recherche Reproductible et @i4replication.bsky.social.
October 16, 2025 at 1:46 PM
Reposted by Frederic Lemoine
🔬♻️ « Quand la science s’amuse à se reproduire »
Merci à @lemonde.fr et à David Larousserie pour la mise en lumière des #ReplicationGames du 3 octobre, co-organisés par le Réseau Français de la Recherche Reproductible et @i4replication.bsky.social.
October 16, 2025 at 1:02 PM
Reposted by Frederic Lemoine
👏 Many thanks to everyone who took part in the Replication Games on Friday, October 3rd!

6 teams joined the challenge, 5 in person and 1 online, bringing curiosity and collaboration to every step and making this event a truly inspiring collective experience around reproducibility & open science.
October 7, 2025 at 1:55 PM
Reposted by Frederic Lemoine
www.youtube.com/watch?v=hMH1...

I am very thankful to the @ec.europa.eu for highlighting my research at @institutpasteur.bsky.social . It is a privilege for me to have the opportunity of developing my professional life here.
From Ancient Bones to Modern Insights: Argentinian Scientist Uncovering History of Disease in Paris
YouTube video by European Commission
www.youtube.com
July 10, 2025 at 10:19 AM
Reposted by Frederic Lemoine
Nouveau Cours Pasteur - Pandemics: Origins and Response

📍Institut Pasteur, Paris
📆Du 19 au 30/01/2026
🗣️En anglais
⏳Inscriptions ouvertes jusqu’au 31/10/2025

Un cours pour comprendre les facteurs d’émergence, les dynamiques de propagation, et tirer des leçons des précédentes crises sanitaires.
Nouveau Cours Pasteur - Pandemics: Origins and Response
YouTube video by Institut Pasteur EDUCATION
youtube.com
June 27, 2025 at 1:28 PM
PhyML now implements the Bayesian phylogenetic bootstrap (academic.oup.com/mbe/article/...)! To test it: option "--bayesian_bootstrap" with the latest commits of PhyML: github.com/stephaneguin...
Example: `phyml -d nt -i align.phy -m GTR -b 100 --bayesian_bootstrap`
The Bayesian Phylogenetic Bootstrap and its Application to Short Trees and Branches
Abstract. Felsenstein's bootstrap is the most commonly used method to measure branch support in phylogenetics. Current sequencing technologies can result i
academic.oup.com
June 18, 2025 at 11:13 AM
Reposted by Frederic Lemoine
Registration is now open!

The 580€ include housing and all meals.

We will close on October 17th or when reaching 80 participants.
The next LEGEND conference on machine learning for evolutionary genomics will be in Aussois (French Alps) between December 8th and 12th.

Mark your calendars and make sure your best work is ready next September when the call for abstracts opens 🙂

legend2025.sciencesconf.org
June 18, 2025 at 7:22 AM
Reposted by Frederic Lemoine
I will be recruiting new postdocs with start dates end 2025 - early 2026. If you'd like to work at the Pasteur Institute in the heart of Paris surrounded by amazing scientists, reach out to discuss possible projects on SynBio / Bacterial Immunity!
May 18, 2025 at 3:20 PM
Reposted by Frederic Lemoine
Henrik Kaessmann @kaessmannlab.bsky.social taking us on an amazing journey to the origins and evolution of the vertebrate brain at #ECCN2025
@borrell-lab.bsky.social @r3rt0.bsky.social @zoltan-molnar.bsky.social
May 7, 2025 at 7:49 AM
Pour ou contre l'IA? "Ne pas confondre recherche et précipitation", par @chtruchet.bsky.social dans @maglarecherche.bsky.social www.larecherche.fr/intelligence...
Ne pas confondre recherche et précipitation
https://www.larecherche.fr/intelligence-artificielle/ne-pas-confondre-recherche-et-précipitation#
April 9, 2025 at 10:51 AM
Reposted by Frederic Lemoine
We are hiring an RE in Bioinfo and Biostats for the COPAFLICT project! It seeks to improve knowledge of viral hemorrhagic fevers and offer new perspectives for their diagnosis and treatment.
Come and work with us at the Hub in @institutpasteur.bsky.social !
See: hub-jobs2025.pasteur.cloud
Research engineer position(s) at the Bioinformatics and Biostatistics Hub of Institut Pasteur
hub-jobs2025.pasteur.cloud
April 2, 2025 at 7:30 PM
We're hiring! Join the Hub of Bioinformatics and Biostatistics at @pasteur.fr as the Head of the "Algorithmics, AI, and Mathematical Modeling" pole. 🧬💻 Apply now: hub-jobs2025.pasteur.cloud #Bioinformatics #ScienceJobs
Permanent research engineer position as Head of Hub Algorithmics & AI pole - Research
The Hub of Bioinformatics and Biostatistics provides analytical support to research units and platforms at the Institut Pasteur. The Hub is committed to this mission through:  As head of the Algorithm...
research.pasteur.fr
March 3, 2025 at 10:18 AM
Publications scientifiques : alerte tsunami youtu.be/QPPbsqcZ4Ew
Publications scientifiques : alerte tsunami !
YouTube video by Grand Labo
youtu.be
January 31, 2025 at 7:45 AM
Colloque annuel du Réseau français de la recherche reproductible à Lyon
openscience.pasteur.fr/2025/01/27/l... via le Centre de Ressources en Information Scientifique (CeRIS)
@pasteur.fr
Le Réseau français de la recherche reproductible vous donne rendez-vous les 3 et 4 avril 2025 à Lyon pour son colloque annuel
Le Réseau français de la recherche reproductible est une initiative nationale informelle qui rassemble des scientifiques engagés dans l’étude des facteurs favorisant la reproductibilité de la reche…
openscience.pasteur.fr
January 28, 2025 at 9:35 AM
Reposted by Frederic Lemoine
Our Primer Methods session continue! This morning @bonomimax.bsky.social will talk about Bayesian inference in integrative structural biology, presenting theory and applications where different types of experimental data have to be combined to obtain accurate structural models of biological systems
January 13, 2025 at 6:44 AM
"Highly recurrent multi-nucleotide mutations in SARS-CoV-2" by 0Nicola De Maio, Kyle Smith, Yatish Turakhia, and Nick Goldman www.biorxiv.org/content/10.1...
Highly recurrent multi-nucleotide mutations in SARS-CoV-2
Multi-nucleotide mutations (MNMs) simultaneously replace multiple nu-cleotides. They are a significant contributor to evolution and disease, as well as to misdiagnosis, misannotation and other biases ...
www.biorxiv.org
December 23, 2024 at 1:29 PM
Reposted by Frederic Lemoine
A new Primer Method today: Sebastien Duchene will present Bayesian phylodynamic models, discussing the prior distributions of key parameters, and the extent to which they can impact downstream inferences of the evolutionary dynamics of organisms.
December 16, 2024 at 6:29 AM