DSMZ Digital Diversity
@dsmzd3.bsky.social
The home of digital resources of @leibniz-dsmz.bsky.social, including BRENDA, SILVA, LPSN and BacDive.
Visit hub.dsmz.de
Visit hub.dsmz.de
Reposted by DSMZ Digital Diversity
The 2025 #BacDive 🦠 release is now online.
🎉🥳 The database now contains information on more than 100,000 strains 🧫.
For this update, new data provided by @leibniz-dsmz.bsky.social and information on type strains of newly described species from the #LPSN database were added.
🎉🥳 The database now contains information on more than 100,000 strains 🧫.
For this update, new data provided by @leibniz-dsmz.bsky.social and information on type strains of newly described species from the #LPSN database were added.
December 19, 2025 at 12:11 PM
The 2025 #BacDive 🦠 release is now online.
🎉🥳 The database now contains information on more than 100,000 strains 🧫.
For this update, new data provided by @leibniz-dsmz.bsky.social and information on type strains of newly described species from the #LPSN database were added.
🎉🥳 The database now contains information on more than 100,000 strains 🧫.
For this update, new data provided by @leibniz-dsmz.bsky.social and information on type strains of newly described species from the #LPSN database were added.
Reposted by DSMZ Digital Diversity
✨With this update, #BacDive additionally receives a new look 🖥️.
The new website, which had been in beta test phase for the last six months, adopts the shared modern design of @dsmzd3.bsky.social, which offers users an intuitive navigation and more clearly structured strain detail pages.
The new website, which had been in beta test phase for the last six months, adopts the shared modern design of @dsmzd3.bsky.social, which offers users an intuitive navigation and more clearly structured strain detail pages.
December 19, 2025 at 12:11 PM
✨With this update, #BacDive additionally receives a new look 🖥️.
The new website, which had been in beta test phase for the last six months, adopts the shared modern design of @dsmzd3.bsky.social, which offers users an intuitive navigation and more clearly structured strain detail pages.
The new website, which had been in beta test phase for the last six months, adopts the shared modern design of @dsmzd3.bsky.social, which offers users an intuitive navigation and more clearly structured strain detail pages.
Reposted by DSMZ Digital Diversity
🧬 #BacDive is also taking a long-awaited leap into the world of genomics with the debut of a genome browser 🔎🖥️.
For the first time, BacDive now displays genomic information. The genome browser feature lists and visualizes #Bakta annotations of #INSDC genome assemblies.
For the first time, BacDive now displays genomic information. The genome browser feature lists and visualizes #Bakta annotations of #INSDC genome assemblies.
December 19, 2025 at 12:11 PM
Reposted by DSMZ Digital Diversity
November 24, 2025 at 9:30 AM
📣 Open position: We are looking for a new #ScientificLead for the #SILVA database 🧬🖥️
You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more!
👉 www.dsmz.de/dsmz/career/...
Read and share ‼️
#sciencejobs 🦠🧪 #career #taxonomy
You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more!
👉 www.dsmz.de/dsmz/career/...
Read and share ‼️
#sciencejobs 🦠🧪 #career #taxonomy
November 22, 2025 at 3:36 PM
📣 Open position: We are looking for a new #ScientificLead for the #SILVA database 🧬🖥️
You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more!
👉 www.dsmz.de/dsmz/career/...
Read and share ‼️
#sciencejobs 🦠🧪 #career #taxonomy
You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more!
👉 www.dsmz.de/dsmz/career/...
Read and share ‼️
#sciencejobs 🦠🧪 #career #taxonomy
🧬🖥️SILVA in 2026: a global core biodata resource for rRNA within the DSMZ digital diversity
📑The new publication about the #SILVA database for the #NAR database issue is now online.
👉 academic.oup.com/nar/article/...
📑The new publication about the #SILVA database for the #NAR database issue is now online.
👉 academic.oup.com/nar/article/...
SILVA in 2026: a global core biodata resource for rRNA within the DSMZ digital diversity
Abstract. Since 2007, the SILVA database (https://www.arb-silva.de/) has served as a comprehensive resource providing quality-checked, aligned, and classif
academic.oup.com
November 19, 2025 at 10:36 AM
🧬🖥️SILVA in 2026: a global core biodata resource for rRNA within the DSMZ digital diversity
📑The new publication about the #SILVA database for the #NAR database issue is now online.
👉 academic.oup.com/nar/article/...
📑The new publication about the #SILVA database for the #NAR database issue is now online.
👉 academic.oup.com/nar/article/...
📣 Workshop announcement: This year's #SILVA 🧬 online workshop will take place on 🗓️ 11th December, at 3pm CET.
The #SILVA team will inform about the upcoming release, the new website design 🖥️, and more!
Write to contact@arb-silva.de to receive the Zoom login details
#science #FAIRdata 🧫🧪
The #SILVA team will inform about the upcoming release, the new website design 🖥️, and more!
Write to contact@arb-silva.de to receive the Zoom login details
#science #FAIRdata 🧫🧪
November 17, 2025 at 2:51 PM
Many thanks to @elixir-europe.org for an incredibly productive week at #BioHackEU25 🖥️: full of learning, new collaborations, and plenty of fun on top!
The @denbi.bsky.social crew & friends from Germany at #BioHackEU25!
November 14, 2025 at 11:29 AM
Many thanks to @elixir-europe.org for an incredibly productive week at #BioHackEU25 🖥️: full of learning, new collaborations, and plenty of fun on top!
Reposted by DSMZ Digital Diversity
This year's #BacDive workshop will take place on 24th November 2025, 3 - 5 PM CET online!
We are especially looking forward to the opportunity to answer your questions, and hear your feedback and ideas. 🦠🧬.
Write to training@bacdive.de to receive the Zoom login details 🖥️.
We are especially looking forward to the opportunity to answer your questions, and hear your feedback and ideas. 🦠🧬.
Write to training@bacdive.de to receive the Zoom login details 🖥️.
November 13, 2025 at 9:35 AM
This year's #BacDive workshop will take place on 24th November 2025, 3 - 5 PM CET online!
We are especially looking forward to the opportunity to answer your questions, and hear your feedback and ideas. 🦠🧬.
Write to training@bacdive.de to receive the Zoom login details 🖥️.
We are especially looking forward to the opportunity to answer your questions, and hear your feedback and ideas. 🦠🧬.
Write to training@bacdive.de to receive the Zoom login details 🖥️.
We are happy to announce - our new paper is online NOW. Take a look:
academic.oup.com/nar/advance-...
@dsmzd3.bsky.social @leibniz-dsmz.bsky.social
academic.oup.com/nar/advance-...
@dsmzd3.bsky.social @leibniz-dsmz.bsky.social
November 7, 2025 at 11:08 AM
✔️Just published:
#TYGS and #LPSN in 2025: a Global Core Biodata Resource 🧬🖥️ for genome-based classification and nomenclature of prokaryotes 🦠 within #DSMZDigitalDiversity
👉 academic.oup.com/nar/article/...
#TYGS and #LPSN in 2025: a Global Core Biodata Resource 🧬🖥️ for genome-based classification and nomenclature of prokaryotes 🦠 within #DSMZDigitalDiversity
👉 academic.oup.com/nar/article/...
TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity
Abstract. The List of Prokaryotic names with Standing in Nomenclature (LPSN, https://lpsn.dsmz.de/) is an authoritative, expert-curated resource on prokary
academic.oup.com
November 3, 2025 at 5:39 PM
✔️Just published:
#TYGS and #LPSN in 2025: a Global Core Biodata Resource 🧬🖥️ for genome-based classification and nomenclature of prokaryotes 🦠 within #DSMZDigitalDiversity
👉 academic.oup.com/nar/article/...
#TYGS and #LPSN in 2025: a Global Core Biodata Resource 🧬🖥️ for genome-based classification and nomenclature of prokaryotes 🦠 within #DSMZDigitalDiversity
👉 academic.oup.com/nar/article/...
📑In collaboration with #LPSN, the International Committee on Systematics of Prokaryotes has compiled a list of recommended names for bacteria of medical importance 🧫⚕️.
Follow the link to read the report.
🔗https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.006943
Follow the link to read the report.
🔗https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.006943
List of Recommended Names for bacteria of medical importance: report of the Ad Hoc Committee on Mitigating Changes in Prokaryotic Nomenclature
The Ad Hoc Committee on Mitigating Changes in Prokaryotic Nomenclature was recently established under the auspices of the International Committee on Systematics of Prokaryotes to address the impact of...
www.microbiologyresearch.org
October 28, 2025 at 6:43 AM
📑In collaboration with #LPSN, the International Committee on Systematics of Prokaryotes has compiled a list of recommended names for bacteria of medical importance 🧫⚕️.
Follow the link to read the report.
🔗https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.006943
Follow the link to read the report.
🔗https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.006943
Reposted by DSMZ Digital Diversity
Thank you, #Global Biodata Coalition for the organization, to give us the opportunity to get to know the other GCBRs, including inspiring discussions, new ideas and that we all are facing similar challenges. We, #Bacdive, #SILVA, and #BRENDA from the @dsmzd3.bsky.social had a great time here.
October 8, 2025 at 8:28 PM
Thank you, #Global Biodata Coalition for the organization, to give us the opportunity to get to know the other GCBRs, including inspiring discussions, new ideas and that we all are facing similar challenges. We, #Bacdive, #SILVA, and #BRENDA from the @dsmzd3.bsky.social had a great time here.
Reposted by DSMZ Digital Diversity
That’s a wrap! 🎉 The NFDI4Microbiota Annual Conference 2025 ended with inspiring keynotes, exciting panels, engaging posters & workshops – and above all, a strong community spirit.
🙏 Huge thanks to all participants and our community for 3 days of knowledge-sharing and collaboration.
🙏 Huge thanks to all participants and our community for 3 days of knowledge-sharing and collaboration.
October 2, 2025 at 1:16 PM
That’s a wrap! 🎉 The NFDI4Microbiota Annual Conference 2025 ended with inspiring keynotes, exciting panels, engaging posters & workshops – and above all, a strong community spirit.
🙏 Huge thanks to all participants and our community for 3 days of knowledge-sharing and collaboration.
🙏 Huge thanks to all participants and our community for 3 days of knowledge-sharing and collaboration.
Reposted by DSMZ Digital Diversity
🚀 NFDI4Microbiota Annual Conference 2025 – Day 1 & 2!
Highlights included:
🎤 A thought-provoking keynote by Alexandre Smirnov
💬 A lively panel discussion on bridging lab practices and scientific publishing
🤝 Engaging networking and community exchange session. Stay tuner for day 3!
Highlights included:
🎤 A thought-provoking keynote by Alexandre Smirnov
💬 A lively panel discussion on bridging lab practices and scientific publishing
🤝 Engaging networking and community exchange session. Stay tuner for day 3!
October 1, 2025 at 9:57 AM
🚀 NFDI4Microbiota Annual Conference 2025 – Day 1 & 2!
Highlights included:
🎤 A thought-provoking keynote by Alexandre Smirnov
💬 A lively panel discussion on bridging lab practices and scientific publishing
🤝 Engaging networking and community exchange session. Stay tuner for day 3!
Highlights included:
🎤 A thought-provoking keynote by Alexandre Smirnov
💬 A lively panel discussion on bridging lab practices and scientific publishing
🤝 Engaging networking and community exchange session. Stay tuner for day 3!
❗New publication📑
Read all about #StrainInfo - the central database for linked microbial strain identifiers 🧫🖥️
👉 academic.oup.com/database/art...
#DSMZDigitalDiversity #science 🧪 #databases #FAIRdata @nfdi4microbiota.bsky.social 🧬
Read all about #StrainInfo - the central database for linked microbial strain identifiers 🧫🖥️
👉 academic.oup.com/database/art...
#DSMZDigitalDiversity #science 🧪 #databases #FAIRdata @nfdi4microbiota.bsky.social 🧬
StrainInfo—the central database for linked microbial strain identifiers
Abstract. Throughout scientific literature and databases, microbial strains are often distinguished using either non-standardized designations or one of se
academic.oup.com
September 26, 2025 at 6:46 AM
❗New publication📑
Read all about #StrainInfo - the central database for linked microbial strain identifiers 🧫🖥️
👉 academic.oup.com/database/art...
#DSMZDigitalDiversity #science 🧪 #databases #FAIRdata @nfdi4microbiota.bsky.social 🧬
Read all about #StrainInfo - the central database for linked microbial strain identifiers 🧫🖥️
👉 academic.oup.com/database/art...
#DSMZDigitalDiversity #science 🧪 #databases #FAIRdata @nfdi4microbiota.bsky.social 🧬
🖥️ New design for #SILVA
#SILVA 🧬 joined @leibniz-dsmz.bsky.social 🧫 and the @dsmzd3.bsky.social in 2023. This is now also visible on the redesigned website 🖌️, which has been restructured reorganized in a first step towards an improved and modernized #SILVA!
Try it out at www.arb-silva.de
#SILVA 🧬 joined @leibniz-dsmz.bsky.social 🧫 and the @dsmzd3.bsky.social in 2023. This is now also visible on the redesigned website 🖌️, which has been restructured reorganized in a first step towards an improved and modernized #SILVA!
Try it out at www.arb-silva.de
September 23, 2025 at 8:49 AM
🖥️ New design for #SILVA
#SILVA 🧬 joined @leibniz-dsmz.bsky.social 🧫 and the @dsmzd3.bsky.social in 2023. This is now also visible on the redesigned website 🖌️, which has been restructured reorganized in a first step towards an improved and modernized #SILVA!
Try it out at www.arb-silva.de
#SILVA 🧬 joined @leibniz-dsmz.bsky.social 🧫 and the @dsmzd3.bsky.social in 2023. This is now also visible on the redesigned website 🖌️, which has been restructured reorganized in a first step towards an improved and modernized #SILVA!
Try it out at www.arb-silva.de
Reposted by DSMZ Digital Diversity
BRENDA SPARQL Endpoint
A first prototype of a knowledge graph has been released and is now accessible through a newly established SPARQL endpoint: lnkd.in/eg_ZfTMY
The graph is based on the @dsmzd3.bsky.social Ontology and currently supports integration efforts within the @dsmzd3.bsky.social Hub.
A first prototype of a knowledge graph has been released and is now accessible through a newly established SPARQL endpoint: lnkd.in/eg_ZfTMY
The graph is based on the @dsmzd3.bsky.social Ontology and currently supports integration efforts within the @dsmzd3.bsky.social Hub.
September 19, 2025 at 10:52 AM
BRENDA SPARQL Endpoint
A first prototype of a knowledge graph has been released and is now accessible through a newly established SPARQL endpoint: lnkd.in/eg_ZfTMY
The graph is based on the @dsmzd3.bsky.social Ontology and currently supports integration efforts within the @dsmzd3.bsky.social Hub.
A first prototype of a knowledge graph has been released and is now accessible through a newly established SPARQL endpoint: lnkd.in/eg_ZfTMY
The graph is based on the @dsmzd3.bsky.social Ontology and currently supports integration efforts within the @dsmzd3.bsky.social Hub.
Reposted by DSMZ Digital Diversity
A new BRENDA Pathway Summary Page has been developed, accessible via links on enzyme and ligand summary pages as well as through the overview map. Each page organizes key information into distinct tabs for clarity and ease of use. An example is the Entner–Doudoroff pathway.
@dsmzd3.bsky.social
@dsmzd3.bsky.social
September 19, 2025 at 10:53 AM
A new BRENDA Pathway Summary Page has been developed, accessible via links on enzyme and ligand summary pages as well as through the overview map. Each page organizes key information into distinct tabs for clarity and ease of use. An example is the Entner–Doudoroff pathway.
@dsmzd3.bsky.social
@dsmzd3.bsky.social
Thanks for a great #ECCOXLIII @westerdijkinst.bsky.social 🍄🟫. We enjoyed meeting colleagues from culture collections around Europe 🧫🇪🇺 On tuesday, Lorenz Reimer presented the upcoming Strain Discovery Database 🖥 that is being developed within the #Bioindustry4.0 project.
September 17, 2025 at 1:54 PM
Thanks for a great #ECCOXLIII @westerdijkinst.bsky.social 🍄🟫. We enjoyed meeting colleagues from culture collections around Europe 🧫🇪🇺 On tuesday, Lorenz Reimer presented the upcoming Strain Discovery Database 🖥 that is being developed within the #Bioindustry4.0 project.
Reposted by DSMZ Digital Diversity
📆Save the date. 👉 This year's #BacDive workshop will take place on 24th November 2025, 3 - 5 PM CET online!
Join us for updates and the opportunity to ask questions and provide feedback 🦠🧬.
Write to training@bacdive.de to receive the Zoom login details 🖥️.
Join us for updates and the opportunity to ask questions and provide feedback 🦠🧬.
Write to training@bacdive.de to receive the Zoom login details 🖥️.
September 12, 2025 at 8:34 AM
📆Save the date. 👉 This year's #BacDive workshop will take place on 24th November 2025, 3 - 5 PM CET online!
Join us for updates and the opportunity to ask questions and provide feedback 🦠🧬.
Write to training@bacdive.de to receive the Zoom login details 🖥️.
Join us for updates and the opportunity to ask questions and provide feedback 🦠🧬.
Write to training@bacdive.de to receive the Zoom login details 🖥️.
Reposted by DSMZ Digital Diversity
Opening of day#3 of the #BeilsteinEnzymology2025 Symposium with the talk by Antje Jäde on the #BRENDA enzyme database. It is now incorporated in the @leibniz-gemeinschaft.de DSMZ Digital Diversity hub. Great to see BRENDA on safe tracks.
September 11, 2025 at 7:48 AM
Opening of day#3 of the #BeilsteinEnzymology2025 Symposium with the talk by Antje Jäde on the #BRENDA enzyme database. It is now incorporated in the @leibniz-gemeinschaft.de DSMZ Digital Diversity hub. Great to see BRENDA on safe tracks.
👉 Join the #NFDI4Microbiota Conference 🦠 and learn how to identify strain designations in literature and sequence metadata by leveraging the #StrainInfo API 🖥️🧬 and libraries in #Workshop7.
Deadline extended! You can now register for the NFDI4Microbiota Conference until 11 September. 📅 30 Sept – 2 Oct 2025 | 📍 Cologne💡 Free participation, hands-on workshops, poster submissions, and networking for wet-lab scientists and bioinformaticians. Register here: events.hifis.net/eve...
September 1, 2025 at 9:39 AM
👉 Join the #NFDI4Microbiota Conference 🦠 and learn how to identify strain designations in literature and sequence metadata by leveraging the #StrainInfo API 🖥️🧬 and libraries in #Workshop7.
Reposted by DSMZ Digital Diversity
🧬 Julia Koblitz (@leibniz-dsmz.bsky.social @dsmzd3.bsky.social @denbi.bsky.social ) is presenting at @iscb.bsky.social / ECCB 2025!
🗣️ "From microbes to molecules: How DSMZ digital diversity integrates diverse datasets into a unified framework"
#ECCB2025 #Bioinformatics
🗣️ "From microbes to molecules: How DSMZ digital diversity integrates diverse datasets into a unified framework"
#ECCB2025 #Bioinformatics
July 23, 2025 at 11:08 AM
🧬 Julia Koblitz (@leibniz-dsmz.bsky.social @dsmzd3.bsky.social @denbi.bsky.social ) is presenting at @iscb.bsky.social / ECCB 2025!
🗣️ "From microbes to molecules: How DSMZ digital diversity integrates diverse datasets into a unified framework"
#ECCB2025 #Bioinformatics
🗣️ "From microbes to molecules: How DSMZ digital diversity integrates diverse datasets into a unified framework"
#ECCB2025 #Bioinformatics