Nicolas Bierne
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couplingdmi.bsky.social
Nicolas Bierne
@couplingdmi.bsky.social
CNRS researcher at @isemevol.bsky.social Montpellier
Population Genetics, Evolution, Marine Biology, Transmissible Cancers
#PopGen #Hybridization #Introgression #MarEvol #Transcan #MusselsAreCool
Reposted by Nicolas Bierne
Happy to highlight an essay I wrote together with @marcdemanuel.bsky.social,
@natanaels.bsky.social and Anastasia Stolyarova, trying to think through what sets the mutation rate of a cell type in an animal species: www.biorxiv.org/content/10.6... 1/n
What sets the mutation rate of a cell type in an animal species?
Germline mutation rates per generation are strikingly similar across animals, despite vast differences in life histories. Analogously, in at least one somatic cell type, mutation rates at the end of l...
www.biorxiv.org
December 22, 2025 at 3:09 PM
Reposted by Nicolas Bierne
New preprint from the lab on bioRxiv, led by Grace Zhang!

Quick summary: Lots of studies have examined costs and benefits associated with resistance. Most focus on a single stressor, leaving unclear how resistance shapes fitness and evolution under multiple interacting stresses.
Context dependence shapes the evolution of glyphosate and herbivory resistance in Ipomoea purpurea https://www.biorxiv.org/content/10.64898/2025.12.20.695696v1
December 23, 2025 at 2:53 PM
J'ai été interviewé dans l'émission Soyons Nature sur radio campus Montpellier pour expliquer comment l'analyse de l'ADN révèle l'impact des activités humaines sur la biodiversité et l'évolution des espèces marines. www.radiocampusmontpellier.fr/podcast/soyo...
Soyons Nature - 10/12/25 - Radio Campus Montpellier
Dans cette émission nous recevons Nicolas Bierne, directeur de recherche au CNRS à l'Institut des Sciences de l'Évolution de Montpellier dans l'équipe biologie évolution marine, venu nous parler de la...
www.radiocampusmontpellier.fr
December 11, 2025 at 12:15 PM
"les cellules buissonnières" now translated into English with the title "Hidden Guests". I loved this reading and I offered 5 to friends and family for christmas last year, a suggestion for you folks.
December 4, 2025 at 7:29 PM
Fatigue 😩
"Conditions d’éligibilité - L’appel est ouvert à des jeunes chercheurs ou chercheuses, de toute nationalité, ayant soutenu leur thèse depuis moins de deux ans à la date de prise de fonction. Cette règle des « moins de deux ans » doit impérativement être respectée"
December 4, 2025 at 4:26 PM
Does anyone here know about Hi-C heatmaps? What do you think of this one? I feel like the patterns of the first and last five chromosomes are different. Would you agree? What do you think that is? Asking for a friend.
December 2, 2025 at 10:52 PM
Improving two-step cancer treatment strategies based on evolutionary models, but above all a nice evolutionary rescue model that should be of interest to everyone. #PopGen #CanEcoEvo
November 29, 2025 at 11:16 AM
Reposted by Nicolas Bierne
Now free to read in Genetics (@genetics-gsa.bsky.social): "Preventing evolutionary rescue in cancer using two-strike therapy" #mathonco study by @srishtipatil.bsky.social, @armaanahmed.bsky.social, Yannick Viossat and me, determining the optimal time to switch treatments. doi.org/10.1093/gene...
Preventing evolutionary rescue in cancer using two-strike therapy
Abstract. First-line cancer treatment frequently fails due to initially rare therapeutic resistance. An important clinical question is then how to schedule
doi.org
November 29, 2025 at 9:29 AM
Reposted by Nicolas Bierne
We are excited to share our recent work on the surprising robustness of Ancestral Recombination Graph (ARG) inference tools to computational phasing errors, now available on BioRxiv: biorxiv.org/content/10.1....
This work is co-advised by @yundeng.bsky.social and Rasmus Nielsen.
1/7
Robustness of Ancestral Recombination Graph Inference Tools to Phasing Errors
Ancestral Recombination Graphs (ARGs) are fundamental population genetic structures that encode the genealogical history of a sample of haplotypes along the genome. They have recently received substan...
biorxiv.org
November 26, 2025 at 5:09 PM
Reposted by Nicolas Bierne
First paper from #TanguyMuller, PhD student in @cbgpmontpellier.bsky.social: Population genomics of incipient allochronic divergence in an infamous moth. #WGS #demography #inbreeding #mutation-load #genome-scan onlinelibrary.wiley.com/doi/10.1111/...
November 28, 2025 at 2:04 PM
Reposted by Nicolas Bierne
Roussel, Suh, @fjruizruano.bsky.social & @amdioncote.bsky.social characterized TE content in naturally occurring killifish hybrids, finding higher TE load and accumulation of Neptune subfamilies in hybrids.

🔗 doi.org/10.1093/molbev/msaf266

#evobio #molbio #TEsky
Accumulation of a Biparentally Inherited Neptune Transposable Element in Natural Killifish Hybrids (Fundulus diaphanus × F. heteroclitus)
Abstract. Transposable elements (TEs) are abundant selfish genetic elements that can mobilize in their host genome, causing DNA damage, mutations, and chro
doi.org
November 20, 2025 at 2:45 PM
Reposted by Nicolas Bierne
Amanda Sabatino, @jpjahner.bsky.social and I have a new paper on @biorxiv-evobio.bsky.social. Amanda, in her undergraduate thesis work, found variation in Colias colour phenotypes is associated with different metrics of urbanization in Toronto. www.biorxiv.org/content/10.1...
Anthropogenic factors explain wing colour variation in Colias (Lepidoptera: Pieridae) butterflies across the Toronto urbanization gradient
Hybridization, or interbreeding between two previously diverged populations, is increasing due to human influences on the environment. Rates of hybridization might be increasing particularly quickly a...
www.biorxiv.org
November 19, 2025 at 7:10 PM
Reposted by Nicolas Bierne
Seeking a postdoc position?
​Balancing selection is a fascinating process: malaria resistance, self-incompatibility,etc. Yet, countless examples remain hidden in genomes!
​If this question intrigues you, the project led by Laure Segurel and Violaine Llaurens (Paris + Lyon) is perfect! urlr.me/Huj2De
Portail Emploi CNRS - Offre d'emploi - Post-doctoral fellow (M/F): Assessing the power of current methods to detect balancing selection in population genomic datasets
urlr.me
November 18, 2025 at 10:16 AM
Reposted by Nicolas Bierne
Save the date! On behalf of the Society, I’m delighted to announce that the next International Society for Evolution, Ecology and Cancer conference will be taking place in Hersonissos, Crete, on May 21-24, 2026. Abstract submissions will open soon. More details: www.evocancer.com
November 19, 2025 at 11:06 AM
Reposted by Nicolas Bierne
We have another publication out! 🎉🎉🎉
“Hybrids along a natural–anthropogenic gradient: improving policy and management across all levels of biodiversity.”
We explore how to deal with hybrids in conservation — scientifically and practically. A thread 🧵
conbio.onlinelibrary.wiley.com/doi/10.1111/...
Hybrids Along a Natural‐Anthropogenic Gradient: Improving Policy and Management Across All Levels of Biodiversity
Hybridization has long been a central topic in evolution and conservation. Recent developments in genomics have increased the ability to detect hybridization, defined here as breeding between species....
conbio.onlinelibrary.wiley.com
November 14, 2025 at 3:37 PM
Reposted by Nicolas Bierne
Il reste encore des places pour notre formation @ephe-psl.bsky.social à R (27 janvier au 5 février à Paris), avec une focalisation complète sur le traitement de données (pas de statistiques).

Il y a un module pour chaque niveau et chaque besoin ! 👇

#rstats #formationcontinue
Marre de passer vos journées à Ctrl+C/Ctrl+V vos données dans un tableur et devoir tout refaire à cause d'un soucis de formatage imprévu ? 😡

Suivez la formation @ephe-psl.bsky.social (27 janvier au 5 février) pour apprendre à utiliser R pour traiter vos données :👇
www.ephe.psl.eu/formations-q...
Apprentissage du logiciel R | École Pratique des Hautes Études
L’EPHE − PSL propose une formation pratique à l’utilisation du logiciel libre R pour la gestion et la manipulation des données avant l’analyse statistique (non traitée dans cette formation).Le contenu...
www.ephe.psl.eu
November 17, 2025 at 9:02 AM
Do you know the ‘a-prize-every-time’ genome scan method? You should. Popular in the mol ecol literature. Take beasts, stress them in the lab, sequence stressed and unstressed, make filters that anyway retains a list of SNPs or genes, look at their functions, claim selection and unfold your story 🍾
November 13, 2025 at 8:55 AM
The disappearance (much better word than extinction) of the Neanderthals could be attributed solely to admixture and an asymmetrical demographic wave. The hypothesis takes the form of equations and receives support in this interesting article.
www.nature.com/articles/s41...
A simple analytical model for Neanderthal disappearance due to genetic dilution by recurrent small-scale immigrations of modern humans - Scientific Reports
Scientific Reports - A simple analytical model for Neanderthal disappearance due to genetic dilution by recurrent small-scale immigrations of modern humans
www.nature.com
November 10, 2025 at 9:26 AM
Reposted by Nicolas Bierne
New paper published together with John Welch on hybrid fitness and how it depends on ploidy and # of distinct ancestries, incl some remarkable fits of data & theory 😶. Keen to hear any thoughts/comments/questions! doi.org/10.1093/gene... Thanks to the team @ Genetics for the smooth experience :)
Predicting Hybrid Fitness: The Effects of Ploidy and Complex Ancestry
Abstract. Hybridization between divergent populations places alleles in novel genomic contexts. This can inject adaptive variation – which is useful for br
doi.org
November 9, 2025 at 1:04 PM
Again in Roscoff 🤩
November 6, 2025 at 8:31 AM
Reposted by Nicolas Bierne
Reminder: we still welcome applications! 📩
2-year postdoctoral position available in Fanny Mondet’s group (Avignon, France) as part of her ERC project, in collaboration with our BeeGEES team in Toulouse
Interested in chemical ecology, transcriptomics, microbiomes, and honey bees? 🐝
Application deadline: November 27, 2025

Thanks for sharing!
Postdoctoral position in chemical ecology and genomics: Mechanisms of honey bee resistance to varroa
A two-year position for a postdoctoral researcher is open at the “Bees and Environment” research unit (Avignon, France) affiliated to INRAE (French National Research Institute for Agriculture, Food and Environment), one of the leading institute in the world for the study of relationships between agriculture, environment and food. The postdoc will work on the physiological mechanisms, microbial diversity and molecular adaptation features of collective defenses against diseases in social animals.Background & dutiesInvasive species that reveal themselves as new parasites disrupt established host-pathogen dynamics and can cause immense economic damage. Despite their high susceptibility to invasions and disease spread, many social animals have evolved mechanisms that allow effective defence at the group level. Such defences have been described across the animal kingdom, especially within social insect species, and are known to involve chemical communication. Our team aims to understand the mechanisms that underpin collective behavioural and physiological defences against unhealthy brood in honey bee colonies, in the context of the invasion by the parasite Varroa destructor.Within this project, the postdoc will lead research to decipher the collective defences that are developed against brood diseases, with a particular interest about varroa. The focus will be placed around the understanding of physiological and behavioural mechanisms that are at the basis of honey bee resistance to this parasitic mite. Investigations will be performed through chemical ecology experiments, as well as transcriptomics and metagenomics. The overall goal is to determine the semiochemicals drivers of host defence towards parasitic infestation, to investigate the potential role of microbiome in resistance triggering, as well as to characterise physiological features of individual bees that are actively involved in the host response.Research environment and work conditionsYou will join the “Bees and Environment” research unit of INRAE in Avignon (France), which develops a wide range of research programs to study honey bee and wild bee populations, in the context of sustainable farming and global change. This postdoc project is part of an Interreg Alcotra grant (2023-2027 – Meliorapi) and an ERC Starting grant (2024-2028 – Bee Healthy) led by Fanny Mondet. You will work in close collaboration with our beekeeping technicians, students and postdocs of the team, our research assistant in chemical ecology and our engineer in honey bee genetics. You will benefit from all the lab and field work facilities of the unit, including our experimental apiary and chemical ecology platform. Additionally, the metagenomic work will be developed in close collaboration with the BeeGEES team of the GenPhySE research unit (INRAE) in Toulouse, especially Thibault Leroy. The BeeGEES team is one of the global leaders in honey bee genomics and have recently developed large-scale metagenomic projects. The postdoctoral researcher will be expected to spend periods in Toulouse to benefit from the local expertise in metagenomics, as well as the access to the genomic facilities.The contract will be for 2 years, starting in March 2026.Salary and benefits are according to INRAE rules in France (monthly gross salary ~ 3,100 €).
jobs.inrae.fr
November 6, 2025 at 7:36 AM
Reposted by Nicolas Bierne
The second Ph.D. chapter of Diane's thesis is out as a preprint. She studied the joint evolution of autopolyploidy and self-fertilization under a gametophytic self-incompatibility context.

Feel free to comment, and congratulations, Diane!

www.biorxiv.org/content/10.1...
Autopolyploid establishment under gametophytic self-incompatibility: the impact of self-fertilization and pollen limitation
Polyploidy is widespread in plants, yet the establishment of neo-polyploids is limited by minority cytotype exclusion (MCE). As polyploidy has been associated with higher selfing rates in empirical st...
www.biorxiv.org
October 31, 2025 at 8:17 AM
Reposted by Nicolas Bierne
🧪🌎 We have a conceptually similar method, RDAforest, just published with @kristinaleilani.bsky.social - only it is about predicting genetic adaptation across unsampled landscape doi.org/10.1111/1755...
October 24, 2025 at 11:20 AM
Reposted by Nicolas Bierne
Proud of the latest edition of my free intro biostats book.

gitrepo: github.com/ybrandvain/b...
book: ybrandvain.github.io/biostats/

Not complete but at a good point to take a break, and I think its quite usable

dm me with comments , ideas etc
Applied Biostatistics
ybrandvain.github.io
October 24, 2025 at 2:33 PM
Reposted by Nicolas Bierne
Hey Yaniv Brandvain is not on Bluesky but his most recent biostats ebook is live ybrandvain.github.io/biostats/. His stats resources have been so helpful to me as I develop my own stats course, so check it out. Github repo here: github.com/ybrandvain/b...
Applied Biostatistics
ybrandvain.github.io
October 24, 2025 at 2:47 PM