Bioinformatics Advances
@bioinfoadv.bsky.social
A fully open access, peer-reviewed journal published jointly by Oxford University Press and the International Society for Computational Biology.
🧬 Explore the latest from Bioinformatics Advances: "DeepCE: a deep learning framework for correlation-enhanced gene regulatory network inference in single-cell RNA sequencing data".
Full article available: https://doi.org/10.1093/bioadv/vbag033
Authors include: @thaddeuswu.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbag033
Authors include: @thaddeuswu.bsky.social
February 10, 2026 at 11:02 AM
🧬 Explore the latest from Bioinformatics Advances: "DeepCE: a deep learning framework for correlation-enhanced gene regulatory network inference in single-cell RNA sequencing data".
Full article available: https://doi.org/10.1093/bioadv/vbag033
Authors include: @thaddeuswu.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbag033
Authors include: @thaddeuswu.bsky.social
📊 Explore the latest from Bioinformatics Advances: “MRDviz: An integrated platform for interactive visualization and joint simulation of minimal residual disease trajectories and associated survival outcomes”.
Full article available: https://doi.org/10.1093/bioadv/vbag029
Full article available: https://doi.org/10.1093/bioadv/vbag029
February 10, 2026 at 10:02 AM
📊 Explore the latest from Bioinformatics Advances: “MRDviz: An integrated platform for interactive visualization and joint simulation of minimal residual disease trajectories and associated survival outcomes”.
Full article available: https://doi.org/10.1093/bioadv/vbag029
Full article available: https://doi.org/10.1093/bioadv/vbag029
🧠 Explore the latest from Bioinformatics Advances: “Age Effect Explorer: A Shiny application to browse and visualize tissue-specific age-related gene expression changes”
Explore the full study: https://doi.org/10.1093/bioadv/vbag026
Explore the full study: https://doi.org/10.1093/bioadv/vbag026
February 9, 2026 at 11:02 AM
🧠 Explore the latest from Bioinformatics Advances: “Age Effect Explorer: A Shiny application to browse and visualize tissue-specific age-related gene expression changes”
Explore the full study: https://doi.org/10.1093/bioadv/vbag026
Explore the full study: https://doi.org/10.1093/bioadv/vbag026
🧬 Explore the latest from Bioinformatics Advances: “The power and limits of predicting inter-protein exon-exon interactions using protein 3D structures”
Full article available: https://doi.org/10.1093/bioadv/vbag032
Full article available: https://doi.org/10.1093/bioadv/vbag032
February 9, 2026 at 10:01 AM
🧬 Explore the latest from Bioinformatics Advances: “The power and limits of predicting inter-protein exon-exon interactions using protein 3D structures”
Full article available: https://doi.org/10.1093/bioadv/vbag032
Full article available: https://doi.org/10.1093/bioadv/vbag032
🌾Now published in Bioinformatics Advances: "Benchmarking methods for genome annotation using Nanopore direct RNA in a non-model crop plant"
Full article available: https://doi.org/10.1093/bioadv/vbag030
Authors include: @kgagalova.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbag030
Authors include: @kgagalova.bsky.social
February 6, 2026 at 11:01 AM
🌾Now published in Bioinformatics Advances: "Benchmarking methods for genome annotation using Nanopore direct RNA in a non-model crop plant"
Full article available: https://doi.org/10.1093/bioadv/vbag030
Authors include: @kgagalova.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbag030
Authors include: @kgagalova.bsky.social
🧬 Explore the latest from Bioinformatics Advances: "Cell type annotation using large language models (LLMs) and CytoAnalyst"
Full article available: https://doi.org/10.1093/bioadv/vbag001
Full article available: https://doi.org/10.1093/bioadv/vbag001
February 6, 2026 at 10:02 AM
🧬 Explore the latest from Bioinformatics Advances: "Cell type annotation using large language models (LLMs) and CytoAnalyst"
Full article available: https://doi.org/10.1093/bioadv/vbag001
Full article available: https://doi.org/10.1093/bioadv/vbag001
📊 Explore the latest from Bioinformatics Advances: “InspectorORF: A tool for visualising Ribo-Seq and additional genomic or transcriptomic data”
Read the full paper here: https://doi.org/10.1093/bioadv/vbag031
Authors include: @evol-molly.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag031
Authors include: @evol-molly.bsky.social
February 5, 2026 at 11:01 AM
📊 Explore the latest from Bioinformatics Advances: “InspectorORF: A tool for visualising Ribo-Seq and additional genomic or transcriptomic data”
Read the full paper here: https://doi.org/10.1093/bioadv/vbag031
Authors include: @evol-molly.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag031
Authors include: @evol-molly.bsky.social
🧬 Explore the latest from Bioinformatics Advances: “Transcriptional and epigenetic regulation of Ca2+-signaling genes in hepatitis B-derived hepatocellular carcinoma and their association with the cancer hallmarks”
Full article available: https://doi.org/10.1093/bioadv/vbaf331
Full article available: https://doi.org/10.1093/bioadv/vbaf331
February 5, 2026 at 10:02 AM
🧬 Explore the latest from Bioinformatics Advances: “Transcriptional and epigenetic regulation of Ca2+-signaling genes in hepatitis B-derived hepatocellular carcinoma and their association with the cancer hallmarks”
Full article available: https://doi.org/10.1093/bioadv/vbaf331
Full article available: https://doi.org/10.1093/bioadv/vbaf331
🤖 Now published in Bioinformatics Advances: "Empowering biological knowledgebases: Advances in human-in-the-loop AI-driven literature curation"
Read the full paper here: https://doi.org/10.1093/bioadv/vbag028
Authors include: @matt.jeffry.es, @matthiasblum.bsky.social, @raulrod.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag028
Authors include: @matt.jeffry.es, @matthiasblum.bsky.social, @raulrod.bsky.social
February 4, 2026 at 11:02 AM
🤖 Now published in Bioinformatics Advances: "Empowering biological knowledgebases: Advances in human-in-the-loop AI-driven literature curation"
Read the full paper here: https://doi.org/10.1093/bioadv/vbag028
Authors include: @matt.jeffry.es, @matthiasblum.bsky.social, @raulrod.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag028
Authors include: @matt.jeffry.es, @matthiasblum.bsky.social, @raulrod.bsky.social
🔬 Just out in Bioinformatics Advances: "CaRinDB: An integrated database of common cancer mutations and residue interaction network parameters"
Explore the full study: https://doi.org/10.1093/bioadv/vbaf313
Explore the full study: https://doi.org/10.1093/bioadv/vbaf313
February 4, 2026 at 10:01 AM
🔬 Just out in Bioinformatics Advances: "CaRinDB: An integrated database of common cancer mutations and residue interaction network parameters"
Explore the full study: https://doi.org/10.1093/bioadv/vbaf313
Explore the full study: https://doi.org/10.1093/bioadv/vbaf313
🧬 Now published in Bioinformatics Advances: "pygenstrat: A Python package for EIGENSTRAT data processing" by @dilekopter.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbag022
Full article available: https://doi.org/10.1093/bioadv/vbag022
February 3, 2026 at 11:05 AM
🧬 Now published in Bioinformatics Advances: "pygenstrat: A Python package for EIGENSTRAT data processing" by @dilekopter.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbag022
Full article available: https://doi.org/10.1093/bioadv/vbag022
🔬 Explore the latest from Bioinformatics Advances: "HDAnalyzeR: Streamlining data analysis for biomarker research"
Read the full paper here: https://doi.org/10.1093/bioadv/vbag020
Authors include: @buenoalvez.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag020
Authors include: @buenoalvez.bsky.social
February 3, 2026 at 10:02 AM
🔬 Explore the latest from Bioinformatics Advances: "HDAnalyzeR: Streamlining data analysis for biomarker research"
Read the full paper here: https://doi.org/10.1093/bioadv/vbag020
Authors include: @buenoalvez.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag020
Authors include: @buenoalvez.bsky.social
🤖 Now published in Bioinformatics Advances: "GPTBioInsightor – Leveraging LLMs for transparent scRNA-Seq cell type annotations".
Read the full paper here:
Read the full paper here:
doi.org
February 2, 2026 at 11:02 AM
🤖 Now published in Bioinformatics Advances: "GPTBioInsightor – Leveraging LLMs for transparent scRNA-Seq cell type annotations".
Read the full paper here:
Read the full paper here:
🔗Just out in Bioinformatics Advances: "Sketchbook: Logical model inference from Boolean network sketches".
Explore the full study: https://doi.org/10.1093/bioadv/vbag014
Explore the full study: https://doi.org/10.1093/bioadv/vbag014
February 2, 2026 at 10:02 AM
🔗Just out in Bioinformatics Advances: "Sketchbook: Logical model inference from Boolean network sketches".
Explore the full study: https://doi.org/10.1093/bioadv/vbag014
Explore the full study: https://doi.org/10.1093/bioadv/vbag014
⏰ Explore the latest from Bioinformatics Advances: "PyCycleBio: Modelling non-sinusoidal-oscillator systems in temporal biology".
The full article is available here: https://doi.org/10.1093/bioadv/vbag018
Authors include: @gobletcellguy.bsky.social, @dbojar.bsky.social
The full article is available here: https://doi.org/10.1093/bioadv/vbag018
Authors include: @gobletcellguy.bsky.social, @dbojar.bsky.social
January 30, 2026 at 11:30 AM
⏰ Explore the latest from Bioinformatics Advances: "PyCycleBio: Modelling non-sinusoidal-oscillator systems in temporal biology".
The full article is available here: https://doi.org/10.1093/bioadv/vbag018
Authors include: @gobletcellguy.bsky.social, @dbojar.bsky.social
The full article is available here: https://doi.org/10.1093/bioadv/vbag018
Authors include: @gobletcellguy.bsky.social, @dbojar.bsky.social
📊 Now published in Bioinformatics Advances: "sigscores: Summary scores for molecular signatures in R"
Read the full paper here: https://doi.org/10.1093/bioadv/vbag021
Read the full paper here: https://doi.org/10.1093/bioadv/vbag021
January 30, 2026 at 10:03 AM
📊 Now published in Bioinformatics Advances: "sigscores: Summary scores for molecular signatures in R"
Read the full paper here: https://doi.org/10.1093/bioadv/vbag021
Read the full paper here: https://doi.org/10.1093/bioadv/vbag021
🧬 Just out in Bioinformatics Advances: "XhetRel: A pipeline for X heterozygosity and relatedness analysis of sequencing data"
Full article available: https://doi.org/10.1093/bioadv/vbag002
Full article available: https://doi.org/10.1093/bioadv/vbag002
January 29, 2026 at 11:30 AM
🧬 Just out in Bioinformatics Advances: "XhetRel: A pipeline for X heterozygosity and relatedness analysis of sequencing data"
Full article available: https://doi.org/10.1093/bioadv/vbag002
Full article available: https://doi.org/10.1093/bioadv/vbag002
🧬 Just out in Bioinformatics Advances: "OMAnnotator: A novel approach to building an annotated consensus genome sequence".
Full article available: https://doi.org/10.1093/bioadv/vbag015
Authors include: @dessimoz.bsky.social, @whynevers.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbag015
Authors include: @dessimoz.bsky.social, @whynevers.bsky.social
January 29, 2026 at 10:02 AM
🧬 Just out in Bioinformatics Advances: "OMAnnotator: A novel approach to building an annotated consensus genome sequence".
Full article available: https://doi.org/10.1093/bioadv/vbag015
Authors include: @dessimoz.bsky.social, @whynevers.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbag015
Authors include: @dessimoz.bsky.social, @whynevers.bsky.social
🦠 Explore the latest from Bioinformatics Advances: "cAMRah: A scalable and portable workflow for harmonized antimicrobial resistance gene prediction from bacterial genomes".
Read the full paper here: https://doi.org/10.1093/bioadv/vbag017
Read the full paper here: https://doi.org/10.1093/bioadv/vbag017
January 28, 2026 at 11:30 AM
🦠 Explore the latest from Bioinformatics Advances: "cAMRah: A scalable and portable workflow for harmonized antimicrobial resistance gene prediction from bacterial genomes".
Read the full paper here: https://doi.org/10.1093/bioadv/vbag017
Read the full paper here: https://doi.org/10.1093/bioadv/vbag017
🌾 Now published in Bioinformatics Advances: "Functional annotation of novel heat stress-responsive genes in rice utilizing public transcriptomes and structurome".
Explore the full study: https://doi.org/10.1093/bioadv/vbag013
Authors include: @sorayone56.bsky.social
Explore the full study: https://doi.org/10.1093/bioadv/vbag013
Authors include: @sorayone56.bsky.social
January 28, 2026 at 10:02 AM
🌾 Now published in Bioinformatics Advances: "Functional annotation of novel heat stress-responsive genes in rice utilizing public transcriptomes and structurome".
Explore the full study: https://doi.org/10.1093/bioadv/vbag013
Authors include: @sorayone56.bsky.social
Explore the full study: https://doi.org/10.1093/bioadv/vbag013
Authors include: @sorayone56.bsky.social
📊 Just out in Bioinformatics Advances: "SPRM: Spatial proteomics resource for multiplexed images"
Full article available: https://doi.org/10.1093/bioadv/vbag019
Full article available: https://doi.org/10.1093/bioadv/vbag019
January 27, 2026 at 11:30 AM
📊 Just out in Bioinformatics Advances: "SPRM: Spatial proteomics resource for multiplexed images"
Full article available: https://doi.org/10.1093/bioadv/vbag019
Full article available: https://doi.org/10.1093/bioadv/vbag019
🔬 Explore the latest from Bioinformatics Advances: "LipidLocator: An open source Shiny web application for spatial lipidomics".
Read the full paper here: https://doi.org/10.1093/bioadv/vbag012
Authors include: @pratarora.bsky.social, @nadiamercader.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag012
Authors include: @pratarora.bsky.social, @nadiamercader.bsky.social
January 27, 2026 at 10:03 AM
🔬 Explore the latest from Bioinformatics Advances: "LipidLocator: An open source Shiny web application for spatial lipidomics".
Read the full paper here: https://doi.org/10.1093/bioadv/vbag012
Authors include: @pratarora.bsky.social, @nadiamercader.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag012
Authors include: @pratarora.bsky.social, @nadiamercader.bsky.social
🗺️ Now published in Bioinformatics Advances: "Discovering paracrine regulators of cell type composition from spatial transcriptomics using SPER".
Explore the full study: https://doi.org/10.1093/bioadv/vbag011
Explore the full study: https://doi.org/10.1093/bioadv/vbag011
January 26, 2026 at 10:02 AM
🗺️ Now published in Bioinformatics Advances: "Discovering paracrine regulators of cell type composition from spatial transcriptomics using SPER".
Explore the full study: https://doi.org/10.1093/bioadv/vbag011
Explore the full study: https://doi.org/10.1093/bioadv/vbag011
🧠 Explore the latest from Bioinformatics Advances: “Multi-view deep learning of highly multiplexed imaging data improves association of cell states with clinical outcomes”.
Find the full study at https://doi.org/10.1093/bioadv/vbag010
Authors include: @kieranrcampbell.bsky.social
Find the full study at https://doi.org/10.1093/bioadv/vbag010
Authors include: @kieranrcampbell.bsky.social
January 23, 2026 at 10:01 AM
🧠 Explore the latest from Bioinformatics Advances: “Multi-view deep learning of highly multiplexed imaging data improves association of cell states with clinical outcomes”.
Find the full study at https://doi.org/10.1093/bioadv/vbag010
Authors include: @kieranrcampbell.bsky.social
Find the full study at https://doi.org/10.1093/bioadv/vbag010
Authors include: @kieranrcampbell.bsky.social
🧬 Just out in Bioinformatics Advances: "FRAME: Fast reference-based ancestry makeup estimation tool".
Full article available: https://doi.org/10.1093/bioadv/vbag006
Full article available: https://doi.org/10.1093/bioadv/vbag006
January 22, 2026 at 10:02 AM
🧬 Just out in Bioinformatics Advances: "FRAME: Fast reference-based ancestry makeup estimation tool".
Full article available: https://doi.org/10.1093/bioadv/vbag006
Full article available: https://doi.org/10.1093/bioadv/vbag006