Baptiste Alberti
@baalberti.bsky.social
Bioinformatician and PhD student in Yad Ghavi-Helm lab
Reposted by Baptiste Alberti
Are you passionate about the mathematics of data science, computational geometry and topology and want to apply your skills to a beautiful biological question?
Come do a PhD with us!
You will help us understand of how boundaries are established and maintained in early heart development.
Come do a PhD with us!
You will help us understand of how boundaries are established and maintained in early heart development.
November 15, 2025 at 3:42 PM
Are you passionate about the mathematics of data science, computational geometry and topology and want to apply your skills to a beautiful biological question?
Come do a PhD with us!
You will help us understand of how boundaries are established and maintained in early heart development.
Come do a PhD with us!
You will help us understand of how boundaries are established and maintained in early heart development.
Reposted by Baptiste Alberti
Congratulations to Dr @baalberti.bsky.social !! 🎉
And many thanks to his jury members @randersson.bsky.social @arnausebe.bsky.social @olivier-gandrillon.mastodon.social.ap.brid.gy Marie Sémon Anouck Necsulea and co-supervizor @paulvilloutreix.bsky.social
And many thanks to his jury members @randersson.bsky.social @arnausebe.bsky.social @olivier-gandrillon.mastodon.social.ap.brid.gy Marie Sémon Anouck Necsulea and co-supervizor @paulvilloutreix.bsky.social
November 10, 2025 at 9:37 AM
Congratulations to Dr @baalberti.bsky.social !! 🎉
And many thanks to his jury members @randersson.bsky.social @arnausebe.bsky.social @olivier-gandrillon.mastodon.social.ap.brid.gy Marie Sémon Anouck Necsulea and co-supervizor @paulvilloutreix.bsky.social
And many thanks to his jury members @randersson.bsky.social @arnausebe.bsky.social @olivier-gandrillon.mastodon.social.ap.brid.gy Marie Sémon Anouck Necsulea and co-supervizor @paulvilloutreix.bsky.social
It's done! I am now a PhD for real!
I defended my PhD thesis last week and what an incredible day it was. I am very grateful to all the members of @igflyon.bsky.social who made these last 4 years and 8 months so memorable. I will cherish all these memories 😊
I defended my PhD thesis last week and what an incredible day it was. I am very grateful to all the members of @igflyon.bsky.social who made these last 4 years and 8 months so memorable. I will cherish all these memories 😊
November 12, 2025 at 3:15 PM
It's done! I am now a PhD for real!
I defended my PhD thesis last week and what an incredible day it was. I am very grateful to all the members of @igflyon.bsky.social who made these last 4 years and 8 months so memorable. I will cherish all these memories 😊
I defended my PhD thesis last week and what an incredible day it was. I am very grateful to all the members of @igflyon.bsky.social who made these last 4 years and 8 months so memorable. I will cherish all these memories 😊
Reposted by Baptiste Alberti
Happy to share STORIES out now on Nature Methods
STORIES learns cell fate landscapes from spatial tramscripromics data profiled at several time points, thus allowing prediction of future cell states.
Led by Geert-Jan Huizing and Jules Samaran
www.nature.com/articles/s41...
@pasteur.fr
STORIES learns cell fate landscapes from spatial tramscripromics data profiled at several time points, thus allowing prediction of future cell states.
Led by Geert-Jan Huizing and Jules Samaran
www.nature.com/articles/s41...
@pasteur.fr
STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport - Nature Methods
By learning a differentiation potential using an optimal transport-based approach, STORIES models and infers cell fate trajectories using spatiotemporal omics data.
www.nature.com
November 4, 2025 at 7:25 AM
Happy to share STORIES out now on Nature Methods
STORIES learns cell fate landscapes from spatial tramscripromics data profiled at several time points, thus allowing prediction of future cell states.
Led by Geert-Jan Huizing and Jules Samaran
www.nature.com/articles/s41...
@pasteur.fr
STORIES learns cell fate landscapes from spatial tramscripromics data profiled at several time points, thus allowing prediction of future cell states.
Led by Geert-Jan Huizing and Jules Samaran
www.nature.com/articles/s41...
@pasteur.fr
Reposted by Baptiste Alberti
Ever wondered what drives enhancer-promoter specificity? Why would an enhancer activate one gene rather than another neighboring one?
Check our latest preprint, led by @mmasoura.bsky.social, to find out!
www.biorxiv.org/content/10.1...
Check our latest preprint, led by @mmasoura.bsky.social, to find out!
www.biorxiv.org/content/10.1...
Promoter-proximal gatekeepers restrict pleiotropic enhancer inputs to achieve tissue specificity
Developmental enhancers are central regulatory elements that can activate multiple genes, yet how they selectively regulate one gene over its neighbours remains unclear. Using the Drosophila twist E3 ...
www.biorxiv.org
October 16, 2025 at 12:34 PM
Ever wondered what drives enhancer-promoter specificity? Why would an enhancer activate one gene rather than another neighboring one?
Check our latest preprint, led by @mmasoura.bsky.social, to find out!
www.biorxiv.org/content/10.1...
Check our latest preprint, led by @mmasoura.bsky.social, to find out!
www.biorxiv.org/content/10.1...
Reposted by Baptiste Alberti
Merci au @cnrsbiologie.bsky.social de mettre en avant notre travail! @baalberti.bsky.social @paulvilloutreix.bsky.social
@igflyon.bsky.social @ensdelyon.bsky.social
@igflyon.bsky.social @ensdelyon.bsky.social
Un embryon virtuel pour cartographier l’activité des régions régulatrices du génome
🤝 @yghavi.bsky.social @cnrs-rhoneauvergne.bsky.social
👉 Lire l'article dans @narjournal.bsky.social buff.ly/e41cZQD
🤝 @yghavi.bsky.social @cnrs-rhoneauvergne.bsky.social
👉 Lire l'article dans @narjournal.bsky.social buff.ly/e41cZQD
Un embryon virtuel pour cartographier l’activité des régions régulatrices du génome
Dans un article publié dans Nucleic Acids Research, des scientifiques décrivent spatial-scERA, une méthode combinant biologie moléculaire, séquençage
buff.ly
July 28, 2025 at 2:25 PM
Merci au @cnrsbiologie.bsky.social de mettre en avant notre travail! @baalberti.bsky.social @paulvilloutreix.bsky.social
@igflyon.bsky.social @ensdelyon.bsky.social
@igflyon.bsky.social @ensdelyon.bsky.social
🚨 Our paper is out! 🚨
Check how spatial-scERA can predict enhancer activity in a virtual Drosophila embryo.
Very proud of this first step in the research world published in @narjournal.bsky.social
Thanks to @yghavi.bsky.social, @paulvilloutreix.bsky.social and all the scientists who made it real!
Check how spatial-scERA can predict enhancer activity in a virtual Drosophila embryo.
Very proud of this first step in the research world published in @narjournal.bsky.social
Thanks to @yghavi.bsky.social, @paulvilloutreix.bsky.social and all the scientists who made it real!
Now available in its final form @narjournal.bsky.social !
doi.org/10.1093/nar/...
Find out how we can reconstruct enhancer activity in vivo in the Drosophila embryo using scRNAseq data and Optimal Transport.
doi.org/10.1093/nar/...
Find out how we can reconstruct enhancer activity in vivo in the Drosophila embryo using scRNAseq data and Optimal Transport.
July 23, 2025 at 8:03 AM
🚨 Our paper is out! 🚨
Check how spatial-scERA can predict enhancer activity in a virtual Drosophila embryo.
Very proud of this first step in the research world published in @narjournal.bsky.social
Thanks to @yghavi.bsky.social, @paulvilloutreix.bsky.social and all the scientists who made it real!
Check how spatial-scERA can predict enhancer activity in a virtual Drosophila embryo.
Very proud of this first step in the research world published in @narjournal.bsky.social
Thanks to @yghavi.bsky.social, @paulvilloutreix.bsky.social and all the scientists who made it real!