The tidyomics map reminds of Brixen, location of the CSAMA summer schools.
(Participants will recognise Woody Walk, Plosehütte and Rossalm, destinations of the midweek course hike.)
(Participants will recognise Woody Walk, Plosehütte and Rossalm, destinations of the midweek course hike.)
October 23, 2025 at 11:29 AM
The tidyomics map reminds of Brixen, location of the CSAMA summer schools.
(Participants will recognise Woody Walk, Plosehütte and Rossalm, destinations of the midweek course hike.)
(Participants will recognise Woody Walk, Plosehütte and Rossalm, destinations of the midweek course hike.)
Weekly recap: Bioconductor on GPUs, tidyomics, Quarto 1.8, Anthropic red-teaming on AIxBio, PGS in the clinic, Shock Doctrine in genome engineering, GenAI for data viz with #Rstats, Datapalooza, 4 compact rejections, more... blog.stephenturner.us/p/weekly-rec... 🧬🖥️🧪
October 17, 2025 at 12:41 PM
Weekly recap: Bioconductor on GPUs, tidyomics, Quarto 1.8, Anthropic red-teaming on AIxBio, PGS in the clinic, Shock Doctrine in genome engineering, GenAI for data viz with #Rstats, Datapalooza, 4 compact rejections, more... blog.stephenturner.us/p/weekly-rec... 🧬🖥️🧪
Join us for another tidyomics meeting tomorrow!
We will chat about several news
- tidyprint
- tidybulk V2
- omicslog
- and more!
We will chat about several news
- tidyprint
- tidybulk V2
- omicslog
- and more!
Our first Fall #tidyomics meeting will be this Wed 10 September, early in US / noon in Europe / late in Australia. Feel free to join if you're interested in what we are doing to make omics data more amenable to tidy data analysis.
Organized with Stefano @stemang.bsky.social
Organized with Stefano @stemang.bsky.social
September 8, 2025 at 11:41 PM
Join us for another tidyomics meeting tomorrow!
We will chat about several news
- tidyprint
- tidybulk V2
- omicslog
- and more!
We will chat about several news
- tidyprint
- tidybulk V2
- omicslog
- and more!
Our first Fall #tidyomics meeting will be this Wed 10 September, early in US / noon in Europe / late in Australia. Feel free to join if you're interested in what we are doing to make omics data more amenable to tidy data analysis.
Organized with Stefano @stemang.bsky.social
Organized with Stefano @stemang.bsky.social
September 8, 2025 at 7:45 PM
Our first Fall #tidyomics meeting will be this Wed 10 September, early in US / noon in Europe / late in Australia. Feel free to join if you're interested in what we are doing to make omics data more amenable to tidy data analysis.
Organized with Stefano @stemang.bsky.social
Organized with Stefano @stemang.bsky.social
is happy to be at #useR2025. So far, I ran into 3 colleagues from various ventures, and learned
* how to underline text in Quarto markdown
* that a `countdown` can end with a sound effect
(in addition to a couple of great workshops about tidyomics and srvyr)
* how to underline text in Quarto markdown
* that a `countdown` can end with a sound effect
(in addition to a couple of great workshops about tidyomics and srvyr)
August 9, 2025 at 1:11 AM
is happy to be at #useR2025. So far, I ran into 3 colleagues from various ventures, and learned
* how to underline text in Quarto markdown
* that a `countdown` can end with a sound effect
(in addition to a couple of great workshops about tidyomics and srvyr)
* how to underline text in Quarto markdown
* that a `countdown` can end with a sound effect
(in addition to a couple of great workshops about tidyomics and srvyr)
June 25, 2025 at 2:46 PM
The hands-on sessions of the course were built around the tidyomics ecosystem, a powerful framework that bridges Bioconductor and the tidyverse for streamlined omics data manipulation and analysis www.nature.com/articles/s41...
The tidyomics ecosystem: enhancing omic data analyses - Nature Methods
tidyomics offers a software ecosystem for omic data manipulation and analysis that bridges Bioconductor with the tidyverse framework.
www.nature.com
May 21, 2025 at 8:10 AM
The hands-on sessions of the course were built around the tidyomics ecosystem, a powerful framework that bridges Bioconductor and the tidyverse for streamlined omics data manipulation and analysis www.nature.com/articles/s41...
Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!
🚀 Just kicked off our Spatial Omics in R/Bioconductor course with @stemang.bsky.social
In this 3-day course, we're gonna explore spatial technologies & hands-on data analysis in R and Bioconductor using tidy principles🧬🧠📊
www.physalia-courses.org/courses-work...
#SpatialOmics #RStats #Bioconductor
In this 3-day course, we're gonna explore spatial technologies & hands-on data analysis in R and Bioconductor using tidy principles🧬🧠📊
www.physalia-courses.org/courses-work...
#SpatialOmics #RStats #Bioconductor
May 19, 2025 at 11:10 AM
Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!
In few hours we have the second #tidyomics meeting! where we will talk about workshops, communication and education and more.
Thursday March 27 with a Europe friendly meeting time (12:00 CET)
Join the @bioconductor.bsky.social slack channel to know more #tidiness_in_bioc channel
Join us
Thursday March 27 with a Europe friendly meeting time (12:00 CET)
Join the @bioconductor.bsky.social slack channel to know more #tidiness_in_bioc channel
Join us
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
March 27, 2025 at 6:48 AM
In few hours we have the second #tidyomics meeting! where we will talk about workshops, communication and education and more.
Thursday March 27 with a Europe friendly meeting time (12:00 CET)
Join the @bioconductor.bsky.social slack channel to know more #tidiness_in_bioc channel
Join us
Thursday March 27 with a Europe friendly meeting time (12:00 CET)
Join the @bioconductor.bsky.social slack channel to know more #tidiness_in_bioc channel
Join us
We encourage diverse participation regardless of background, gender, or beliefs.
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
March 17, 2025 at 6:35 AM
We encourage diverse participation regardless of background, gender, or beliefs.
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
March 17, 2025 at 6:32 AM
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> github.com/tidyomics/ti...
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/archives/CEQ...
Pls share!
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/archives/CEQ...
Pls share!
GitHub - tidyomics/tidyprint
Contribute to tidyomics/tidyprint development by creating an account on GitHub.
github.com
March 11, 2025 at 2:23 AM
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> github.com/tidyomics/ti...
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/archives/CEQ...
Pls share!
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/archives/CEQ...
Pls share!
📅 Tidyomics next meeting is Wed, Mar 12 at 4PM NY / 9PM London / 8AM (Thurs) Melbourne. They'll discuss enhancing SummarizedExperiment display & seek feedback on tidyprint package. See Bioconductor Slack #tidiness-in-bioc channel or events calendar for more info: buff.ly/rdhL3jL
#Tidyomics #RStats
#Tidyomics #RStats
Bioconductor - Events
The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and…
buff.ly
March 4, 2025 at 3:58 PM
📅 Tidyomics next meeting is Wed, Mar 12 at 4PM NY / 9PM London / 8AM (Thurs) Melbourne. They'll discuss enhancing SummarizedExperiment display & seek feedback on tidyprint package. See Bioconductor Slack #tidiness-in-bioc channel or events calendar for more info: buff.ly/rdhL3jL
#Tidyomics #RStats
#Tidyomics #RStats
Would you open your paper to a modular open-collaboration model?
It was game-changing for #tidyomics
If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines
Comment on the shared doc: docs.google.com/document/d/1...
Please share 🙏
It was game-changing for #tidyomics
If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines
Comment on the shared doc: docs.google.com/document/d/1...
Please share 🙏
CTP-1.0
CTP guidelines 1.0 Definition and Operational Details of the Crowd-to-Paper Model This document, called “CTP-1.0”, is a template that includes the guiding principles of projects based on the crowd-to-...
docs.google.com
January 8, 2025 at 5:34 AM
Would you open your paper to a modular open-collaboration model?
It was game-changing for #tidyomics
If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines
Comment on the shared doc: docs.google.com/document/d/1...
Please share 🙏
It was game-changing for #tidyomics
If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines
Comment on the shared doc: docs.google.com/document/d/1...
Please share 🙏
📢🙏 Dear Research Community! A call 👇 to contribute to defining the #guidelines of the #CrowdToPaper research model, as tested for tidyomics doi.org/10.1038/s415...
We welcome feedback from all research fields through comments on docs.google.com/document/d/1...
🙏 Plz Share! ❤️Thank you!
We welcome feedback from all research fields through comments on docs.google.com/document/d/1...
🙏 Plz Share! ❤️Thank you!
CTP-1.0
CTP guidelines 1.0 Definition and Operational Details of the Crowd-to-Paper Model This document, called “CTP-1.0”, is a template that includes the guiding principles of projects based on the crowd-to-...
docs.google.com
December 23, 2024 at 10:41 PM
📢🙏 Dear Research Community! A call 👇 to contribute to defining the #guidelines of the #CrowdToPaper research model, as tested for tidyomics doi.org/10.1038/s415...
We welcome feedback from all research fields through comments on docs.google.com/document/d/1...
🙏 Plz Share! ❤️Thank you!
We welcome feedback from all research fields through comments on docs.google.com/document/d/1...
🙏 Plz Share! ❤️Thank you!
Hello Community! Don't miss the #tidyomics meeting in one week! All welcome! plz share 🙏
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
August 21, 2024 at 12:52 AM
Hello Community! Don't miss the #tidyomics meeting in one week! All welcome! plz share 🙏
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
Great 2nd #tidyomics meeting!
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
August 5, 2024 at 2:45 AM
Great 2nd #tidyomics meeting!
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
Don't miss the #tidyomics meeting tomorrow!
(Tuesday, details below)
@JacquesSerizay will present #tidyCoverage + we'll discuss how to improve the ecosystem and community!
8.30AM US (New York)
1.30PM EU (London)
10.30PM AU (Sydney)
www.bioconductor.org/packages/rel...
(Tuesday, details below)
@JacquesSerizay will present #tidyCoverage + we'll discuss how to improve the ecosystem and community!
8.30AM US (New York)
1.30PM EU (London)
10.30PM AU (Sydney)
www.bioconductor.org/packages/rel...
July 29, 2024 at 8:53 AM
Don't miss the #tidyomics meeting tomorrow!
(Tuesday, details below)
@JacquesSerizay will present #tidyCoverage + we'll discuss how to improve the ecosystem and community!
8.30AM US (New York)
1.30PM EU (London)
10.30PM AU (Sydney)
www.bioconductor.org/packages/rel...
(Tuesday, details below)
@JacquesSerizay will present #tidyCoverage + we'll discuss how to improve the ecosystem and community!
8.30AM US (New York)
1.30PM EU (London)
10.30PM AU (Sydney)
www.bioconductor.org/packages/rel...
🧹🧬💻Exciting first #tidyomics @bioconductor meeting!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
July 17, 2024 at 4:58 AM
🧹🧬💻Exciting first #tidyomics @bioconductor meeting!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
Join us Tuesday 16th of JULY for a #tidyomics Zoom celebration and open discussion about #future plans!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
July 2, 2024 at 12:47 PM
Join us Tuesday 16th of JULY for a #tidyomics Zoom celebration and open discussion about #future plans!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
#TidyOmics
Harmonizing different omics packages with a common R syntax/grammar
tidySpatialExperiment "provides specialized operations such as gating based on geometric & hand-drawn shapes"😍
#NatureMethods 2024
www.nature.com/articles/s41...
Harmonizing different omics packages with a common R syntax/grammar
tidySpatialExperiment "provides specialized operations such as gating based on geometric & hand-drawn shapes"😍
#NatureMethods 2024
www.nature.com/articles/s41...
June 22, 2024 at 11:58 AM
#TidyOmics
Harmonizing different omics packages with a common R syntax/grammar
tidySpatialExperiment "provides specialized operations such as gating based on geometric & hand-drawn shapes"😍
#NatureMethods 2024
www.nature.com/articles/s41...
Harmonizing different omics packages with a common R syntax/grammar
tidySpatialExperiment "provides specialized operations such as gating based on geometric & hand-drawn shapes"😍
#NatureMethods 2024
www.nature.com/articles/s41...
Excited to work with @stemang.bsky.social on tidyomics projects. Ad from Stefano:
"Postdoc and PhD positions available. Great scientific environment and great salary! You will also be exposed to and part of large-scale single-cell and spatial data analyses and AI for single-cell cancer immunology."
"Postdoc and PhD positions available. Great scientific environment and great salary! You will also be exposed to and part of large-scale single-cell and spatial data analyses and AI for single-cell cancer immunology."
Come and celebrate our 150th year. Explore our events, our history, and the foundation we’ve built for the future.
careers.adelaide.edu.au
June 21, 2024 at 4:30 AM
Excited to work with @stemang.bsky.social on tidyomics projects. Ad from Stefano:
"Postdoc and PhD positions available. Great scientific environment and great salary! You will also be exposed to and part of large-scale single-cell and spatial data analyses and AI for single-cell cancer immunology."
"Postdoc and PhD positions available. Great scientific environment and great salary! You will also be exposed to and part of large-scale single-cell and spatial data analyses and AI for single-cell cancer immunology."
📢🎉 Our lab is recruiting x3!
#Postdoc & #PhD Join from 🌏 inc AU, EU, US! Great scientific environment and a very attractive salary.
1. #AI for #singlecell biology
2. #Multiomics, immuno diagnosis (sc+spatial+metab.)
3. #tidyomics + #HPC
Plz share! 🙏 mangiolalaboratory.github.io/Mangiola-Lab...
#Postdoc & #PhD Join from 🌏 inc AU, EU, US! Great scientific environment and a very attractive salary.
1. #AI for #singlecell biology
2. #Multiomics, immuno diagnosis (sc+spatial+metab.)
3. #tidyomics + #HPC
Plz share! 🙏 mangiolalaboratory.github.io/Mangiola-Lab...
June 19, 2024 at 12:29 AM
📢🎉 Our lab is recruiting x3!
#Postdoc & #PhD Join from 🌏 inc AU, EU, US! Great scientific environment and a very attractive salary.
1. #AI for #singlecell biology
2. #Multiomics, immuno diagnosis (sc+spatial+metab.)
3. #tidyomics + #HPC
Plz share! 🙏 mangiolalaboratory.github.io/Mangiola-Lab...
#Postdoc & #PhD Join from 🌏 inc AU, EU, US! Great scientific environment and a very attractive salary.
1. #AI for #singlecell biology
2. #Multiomics, immuno diagnosis (sc+spatial+metab.)
3. #tidyomics + #HPC
Plz share! 🙏 mangiolalaboratory.github.io/Mangiola-Lab...