#spatialomics
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antifreezeprot.bsky.social
#spatialomics #spatialmultiomics #statisticalmethods #methodology #andreatech #barbietech #switzerland 🇨🇭🇨🇭
November 9, 2025 at 6:50 PM
jsantoyo.bsky.social
DESpace2: detection of differential spatial patterns in spatial omics data. #SpatialOmics #DifferentialSpatialPatterns #scRNAseq #Genomics #Bioinformatics @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
DESpace2: detection of differential spatial patterns in spatial omics data
Spatially resolved transcriptomics (SRT) enables the investigation of mRNA expression in a spatial context. While several SRT analysis frameworks have been developed, the vast majority of them focus…
www.biorxiv.org
November 8, 2025 at 6:05 PM
gregorylab.bskyverified.social
Gregory lab #PhD student, Lauren Whaley's work on post-mortem samples from patient-donors, in partnership with the #MarkHughesFoundation

Thank you #MHF for your generosity! 🧠🧬

markhughesfoundation.com.au/latest-resea...

#BrainTumors #GBM #Biobank #Glioblastoma #SpatialOmics
Generous post-mortem donations spark international collaboration  | Mark Hughes Foundation
We have a very unique asset in the Mark Hughes Foundation Biobank – a post-mortem collection from patient-donors. Funded through the generosity of the Mark Hughes Foundation this one-of-a-kind asset c...
markhughesfoundation.com.au
November 3, 2025 at 3:48 PM
svanuytven.bsky.social
Weekly reads 27/10/25:
How cells and whales keep control

open.substack.com/pub/behindth...

#SpatialOmics #Immunotherapy #DeepLearning #Genomics #SystemsBiology
Weekly reads 27/10/25
How cells and whales keep control
open.substack.com
November 2, 2025 at 6:17 PM
schapirolab.bsky.social
We're excited to share that we have released histoCAT_1.78.3 🐈

For the next major update, we would like to learn more about your individual use cases and current needs.
Please fill out this survey to let us know your opinions:
tinyurl.com/histoCAT

#spatialomics #spatialproteomics
histoCAT user survey 2025
Dear histoCAT users, We have now release histoCAT_1.78.3, which now works on updated Windows and MacOS systems and leverages MATLAB2022b. For the next major update, we would like to learn more about...
tinyurl.com
October 28, 2025 at 3:32 PM
yuqitan.bsky.social
🚀 Calling all early-career researchers in single-cell genomics and spatial biology!

Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML
🗓 May 9–10, 2026 | Les Diablerets, Switzerland

Submit here: www.grc.org/single-cell-...

#SpatialOmics #AIML #GRS
October 26, 2025 at 1:51 PM
svanuytven.bsky.social
Weekly reads 20/10/25:
"From aging clones to generative genomics: evolution meets AI in modern biology"

open.substack.com/pub/behindth...

#AIinBiology #SingleCell #SpatialOmics #MultiOmics #DrugDiscovery #Genomics #DeepLearning
Weekly reads 20/10/25
From aging clones to generative genomics: evolution meets AI in modern Biology
open.substack.com
October 26, 2025 at 1:16 PM
jsantoyo.bsky.social
Emerging AI Approaches for Cancer Spatial Omics. #AI #Cancer #SpatialOmics #Genomics #Bioinformatics @gigascience.bsky.social 🧪🧬 🖥️
academic.oup.com/gigascience/...
Emerging AI Approaches for Cancer Spatial Omics
Abstract. Technological breakthroughs in spatial omics and artificial intelligence (AI) have the potential to transform the understanding of cancer cells a
academic.oup.com
October 26, 2025 at 9:31 AM
ivasutevski.bsky.social
Many thanks to the organizers! Looking forward to trying out some of the new analysis tools on my data — and to next year’s ESSB conference!

#spatialomics #spatialbiology #essb #embl
October 24, 2025 at 11:49 AM
jsantoyo.bsky.social
Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy #CellGenomics 🧪🧬 🖥️
www.cell.com/cell-genomic...
October 24, 2025 at 10:30 AM
svanuytven.bsky.social
Couldn’t be prouder of my friend Nacho for publishing his first preprint! 🎉

Multi-omics integration and batch correction using a modality-agnostic deep learning framework www.biorxiv.org/content/10.1...

#SingleCell #SpatialOmics #DeepLearning
Multi-omics integration and batch correction using a modality-agnostic deep learning framework
State-of-the-art biotechnologies allow the detection of different molecular species on the same biological sample, generating complex highly-dimensional multi-modal datasets. Gaining a holistic unders...
www.biorxiv.org
October 23, 2025 at 7:47 AM
scverse.bsky.social
🌟 Thank You to Our Gold Sponsor: Genentech! 🌟

We're delighted to recognize Genentech as a Gold Sponsor of scverse conference 2025! 🏆

#scverse2025 #ComputationalBiology #SingleCell #DrugDiscovery #Genentech #SpatialOmics #Bioinformatics #Biotechnology
October 21, 2025 at 4:54 PM
imetascience.bsky.social
🧬 Benchmarking 14 spatial clustering methods across ~600 #SpatialTranscriptomics datasets
🧫 10 technologies, 8 organs — consistent insights
⚙️ Clear guidance for method choice & preprocessing
🔗 doi.org/10.1002/imt2...
#Bioinformatics #SpatialOmics #scRNA
A comprehensive benchmarking for spatially resolved transcriptomics clustering methods across variable technologies, organs, and replicates
Spatial clustering is a critical step in spatially resolved transcriptomics. Here, we conducted a comprehensive benchmarking analysis of 14 spatial clustering methods using ~600 datasets, including b...
doi.org
October 19, 2025 at 3:14 PM
svanuytven.bsky.social
Weekly reads 13/10/25

open.substack.com/pub/behindth...

#Aging #CancerMetabolism #SingleCell #SpatialOmics #AIinBiology #Genomics
Weekly reads 13/10/25
Four amino accids, pH shifts, and transformers: the new rules of cellular adaptation
open.substack.com
October 19, 2025 at 10:26 AM
galaxyproject.bsky.social
#UseGalaxy ##GalaxyProject ##EOSC ##SingleCell ##SpatialOmics ##Omics ##Transcriptomics ##Bioinformatics ##Genomics ##ComputationalBiology ##EuroScienceGateway ##OpenScience ##ReproducibleResearch ##GalaxyCommunity ##SPOC ##Training ##ScienceCommunity ##DataScience ##Science ##Collaboration ##SciComm (2/2)
October 17, 2025 at 7:17 AM
scverse.bsky.social
🌟 Thank You to Our Platinum Sponsor: 10x Genomics! 🌟

We're delighted to recognize 10x Genomics as a Platinum Sponsor of scverse conference 2025! 🏆

@10xgenomics.bsky.social
#scverse2025 #ComputationalBiology #SingleCell #SpatialOmics #10xGenomics #Bioinformatics #Biotechnology
October 16, 2025 at 3:11 PM
scverse.bsky.social
🌟 Thank You to Our Silver Sponsor: Proteintech! 🌟

We're excited to recognize Proteintech as a Silver Sponsor of scverse conference 2025! 🥈

@proteintech.bsky.social
#scverse2025 #Proteintech #ComputationalBiology #SingleCell #Antibodies #ProteomicsTools #SpatialOmics #Bioinformatics
October 14, 2025 at 2:30 PM
haoyin.bsky.social
#SpatialOmics #MyocardialInfarction
#MolecularCartography 100-gene
#SeqIF 12-marker
#DeepVisualProteomics
4/24/49/96 h postMI🐭

Anti-vWF
⏬Mɸ at endocardial (not epicardial/core/border zone)
⏫infarct wall thinning
⏬🫀adaptation by 2 wk

@natcardiovascres.nature.com 2025
www.nature.com/articles/s44...
October 14, 2025 at 12:33 PM
gregorylab.bskyverified.social
The Gregory Lab presents our own production of #EmilyinParis! #DukeMGC Research Analyst, Emily, is shaking things up this week in #Paris 😍

As one of our spatial team major players she knows "Life (and #spatialomics) is like a croissant. You have to embrace the layers." 🧬🥐
October 13, 2025 at 12:53 PM
haoyin.bsky.social
#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics

MISTy
Multiview Intercellular SpaTial modeling framework

View/spatial scale-specific features
Intraview - same location
Juxtaview - local neighborhood
Paraview - distnat

#GenomeBiol 2022
genomebiology.biomedcentral.com/articles/10....
October 13, 2025 at 11:22 AM
haoyin.bsky.social
#SpatialOmics

MCMICRO
Multiple Choice Microscopy pipeline
mcmicro.org

Multi-channel whole-slide images▶️
Single-cell data + Spatial Feature Tables

Multimodal (CyCIF CODEX mIHC) registration + HE IMC MIBI

#NatMethods 2022
www.nature.com/articles/s41...
October 12, 2025 at 12:21 PM
gregorylab.bskyverified.social
Thank you to @10xgenomics.bsky.social for having #DukeMGC at the Research Triangle Park User Group Meeting! #RTP

Wonderful to see so many familiar faces and meet everyone. We can't wait to see what this year holds... seems a higher SCALE of flex is coming soon 😉🧬
#singlecell #spatialomics
October 10, 2025 at 12:20 PM
kavican.bsky.social
Using in vivo single-cell transcriptomics, we show how bacterial cells, just millimetres apart, use 6S RNA to coordinate virulence and stress adaptation during epithelial barrier crossing
#microbiology #6SRNA #spatialomics #hostpathogen #preprint
biorxiv-microbiol.bsky.social bioRxiv Microbiology @biorxiv-microbiol.bsky.social · Oct 8
6S RNA facilitates bacterial virulence and adaptation at the epithelial barrier https://www.biorxiv.org/content/10.1101/2025.10.07.681022v1
October 9, 2025 at 8:55 PM
scverse.bsky.social
🌟 Thank You to Our Gold Sponsor: Stellaromics! 🌟

We're proud to recognize Stellaromics as a Gold Sponsor of scverse conference 2025! 🥇

@stellaromics.bsky.social
#scverse2025 #SpatialBiology #3DSpatial #ComputationalBiology #SingleCell #Stellaromics #SpatialOmics #Bioinformatics
October 9, 2025 at 3:25 PM
abbelight.bsky.social
Join us & Massive Photonics on 23 Oct 2025 (4–5 PM CET) for a webinar with Prof. Ralf Jungmann, KOL on DNA-PAINT!

Discover how single-molecule #SpatialOmics is reshaping #BioImaging.

🎁 Win a Smart DNA-PAINT Kit!

Register now: us06web.zoom.us/webinar/regi...

#DNAPAINT #Microscopy #SMLM
October 8, 2025 at 1:35 PM