PhyloNetworks: a package for phylogenetic networks - Molecular Biology and Evolution | @scoopit via @Albarus <a href="http://sco.lt/7XEVNp" class="hover:underline text-blue-600 dark:text-sky-400 no-card-link" target="_blank" rel="noopener" data-link="bsky">http://sco.lt/7XEVNp
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November 17, 2024 at 4:10 PM
PhyloNetworks: a package for phylogenetic networks - Molecular Biology and Evolution | @scoopit via @Albarus <a href="http://sco.lt/7XEVNp" class="hover:underline text-blue-600 dark:text-sky-400 no-card-link" target="_blank" rel="noopener" data-link="bsky">http://sco.lt/7XEVNp
📢 SNPs2CF v1.7 just released!
R functions used to compute concordance factors from SNP data for phylogenetic network inference using PhyloNetworks. Version 1.7 now considers multiple SNPs in a window, boosting informative sites.
🔗 github.com/melisaolave/...
R functions used to compute concordance factors from SNP data for phylogenetic network inference using PhyloNetworks. Version 1.7 now considers multiple SNPs in a window, boosting informative sites.
🔗 github.com/melisaolave/...
December 4, 2025 at 8:46 PM
📢 SNPs2CF v1.7 just released!
R functions used to compute concordance factors from SNP data for phylogenetic network inference using PhyloNetworks. Version 1.7 now considers multiple SNPs in a window, boosting informative sites.
🔗 github.com/melisaolave/...
R functions used to compute concordance factors from SNP data for phylogenetic network inference using PhyloNetworks. Version 1.7 now considers multiple SNPs in a window, boosting informative sites.
🔗 github.com/melisaolave/...
Ha! Spoke too soon 😣 The TICR Perl scripts for #SNaQ and #PhyloNetworks broke down with my own data, so I had to modified them for the new ARM64 architecture. Make sure to install an appropriate Perl version and use Rosetta2. Also, deleting the server portion and saving MB log files don’t hurt 🙃💻
April 17, 2025 at 10:36 PM
Ha! Spoke too soon 😣 The TICR Perl scripts for #SNaQ and #PhyloNetworks broke down with my own data, so I had to modified them for the new ARM64 architecture. Make sure to install an appropriate Perl version and use Rosetta2. Also, deleting the server portion and saving MB log files don’t hurt 🙃💻
#PhyloNetworks #SNaQ tutorial ready for Systematics class at #UNAM! However, teaching Julia+a little Perl+a little Bash on top of our mid-level R background would be too much for one session… Should I just turn this into a week-long post summer-break workshop?
April 15, 2025 at 6:31 PM
#PhyloNetworks #SNaQ tutorial ready for Systematics class at #UNAM! However, teaching Julia+a little Perl+a little Bash on top of our mid-level R background would be too much for one session… Should I just turn this into a week-long post summer-break workshop?