Great to see some exciting applications of #MuSpAn in action in @pathologop.bsky.social's talk at #ESSB2025 today!
Come and say hi if you'd like to find out more about the software, or to have a chat about how MuSpAn might be able to help with your data analysis :) #EMBLSpatialBiology
Come and say hi if you'd like to find out more about the software, or to have a chat about how MuSpAn might be able to help with your data analysis :) #EMBLSpatialBiology
October 15, 2025 at 9:30 AM
Great to see some exciting applications of #MuSpAn in action in @pathologop.bsky.social's talk at #ESSB2025 today!
Come and say hi if you'd like to find out more about the software, or to have a chat about how MuSpAn might be able to help with your data analysis :) #EMBLSpatialBiology
Come and say hi if you'd like to find out more about the software, or to have a chat about how MuSpAn might be able to help with your data analysis :) #EMBLSpatialBiology
Definitely! I think I'm officially presenting mine on Thursday evening (#58), but I'm happy to sneak off in a coffee break before then if you'd like a sneak peak? I think @josh-moore.bsky.social is presenting some MuSpAn applications at his poster on Wednesday evening (not sure of the number though)
October 14, 2025 at 1:00 PM
Definitely! I think I'm officially presenting mine on Thursday evening (#58), but I'm happy to sneak off in a coffee break before then if you'd like a sneak peak? I think @josh-moore.bsky.social is presenting some MuSpAn applications at his poster on Wednesday evening (not sure of the number though)
Looking forward to seeing all the cool science that MuSpAn will contribute to. If you work with images, I would recommend to check this out
Very pleased to announce that our package for Multiscale Spatial Analysis - MuSpAn - has landed!
The preprint is on biorxiv now, but you can find a lot more details at www.muspan.co.uk, including documentation, worked tutorials (an ever-expanding list), install guides, and how to get the code!
The preprint is on biorxiv now, but you can find a lot more details at www.muspan.co.uk, including documentation, worked tutorials (an ever-expanding list), install guides, and how to get the code!
December 10, 2024 at 8:40 AM
Looking forward to seeing all the cool science that MuSpAn will contribute to. If you work with images, I would recommend to check this out
Boosting these two PDRA positions for anyone looking to do research in #SpatialBiology or #MethodDevelopment using some cool maths! The deadline is on Monday, so still time to apply.
We made a page on the MuSpAn website so you can find all the info from one place:
www.muspan.co.uk/vacancies
We made a page on the MuSpAn website so you can find all the info from one place:
www.muspan.co.uk/vacancies
May 7, 2025 at 10:38 AM
Boosting these two PDRA positions for anyone looking to do research in #SpatialBiology or #MethodDevelopment using some cool maths! The deadline is on Monday, so still time to apply.
We made a page on the MuSpAn website so you can find all the info from one place:
www.muspan.co.uk/vacancies
We made a page on the MuSpAn website so you can find all the info from one place:
www.muspan.co.uk/vacancies
We've tried hard to make MuSpAn accessible - with some basic Python knowledge, you can go an extremely long way. There are a LOT of fun features for users who want to really explore their spatial biology though - I won't go nuts with posts today, but I'm looking forward to chatting about them here!
December 9, 2024 at 2:24 PM
We've tried hard to make MuSpAn accessible - with some basic Python knowledge, you can go an extremely long way. There are a LOT of fun features for users who want to really explore their spatial biology though - I won't go nuts with posts today, but I'm looking forward to chatting about them here!
Another postdoc position working ongside the wider #MuSpAn community is currently open - this time working with Prof Jens Rittscher and others at the intersection of colorectal cancer, machine learning, spatial statistics, and mathematical modelling.
Apply before 30th June!
tinyurl.com/3ht3rh3h
Apply before 30th June!
tinyurl.com/3ht3rh3h
Job Details
tinyurl.com
May 29, 2025 at 3:16 PM
Another postdoc position working ongside the wider #MuSpAn community is currently open - this time working with Prof Jens Rittscher and others at the intersection of colorectal cancer, machine learning, spatial statistics, and mathematical modelling.
Apply before 30th June!
tinyurl.com/3ht3rh3h
Apply before 30th June!
tinyurl.com/3ht3rh3h
If you're at @oxfordcancer.bsky.social's #OxCODE this morning, go and chat to @josh-moore.bsky.social during the poster session!
He's one of the key architects of MuSpAn and will be happy to answer any questions you may have about getting started with the software
doi.org/10.1101/2024...
He's one of the key architects of MuSpAn and will be happy to answer any questions you may have about getting started with the software
doi.org/10.1101/2024...
December 10, 2024 at 12:10 PM
If you're at @oxfordcancer.bsky.social's #OxCODE this morning, go and chat to @josh-moore.bsky.social during the poster session!
He's one of the key architects of MuSpAn and will be happy to answer any questions you may have about getting started with the software
doi.org/10.1101/2024...
He's one of the key architects of MuSpAn and will be happy to answer any questions you may have about getting started with the software
doi.org/10.1101/2024...
Our new MuSpAn preprint is now live, featuring additional examples and with expanded supplementary information: doi.org/10.1101/2024...
This accompanies the release today of v1.2.0 of MuSpAn with new features, optimisations, and bug fixes: docs.muspan.co.uk/latest/Insta...
🧪🧬🖥️ #SpatialBiology
This accompanies the release today of v1.2.0 of MuSpAn with new features, optimisations, and bug fixes: docs.muspan.co.uk/latest/Insta...
🧪🧬🖥️ #SpatialBiology
MuSpAn: A Toolbox for Multiscale Spatial Analysis
Advances in multiplex imaging and spatial omics have revolutionised spatial data generation in biology, revealing complex tissue organisation across multiple scales. However, methods for analysing the...
doi.org
September 25, 2025 at 12:55 PM
Our new MuSpAn preprint is now live, featuring additional examples and with expanded supplementary information: doi.org/10.1101/2024...
This accompanies the release today of v1.2.0 of MuSpAn with new features, optimisations, and bug fixes: docs.muspan.co.uk/latest/Insta...
🧪🧬🖥️ #SpatialBiology
This accompanies the release today of v1.2.0 of MuSpAn with new features, optimisations, and bug fixes: docs.muspan.co.uk/latest/Insta...
🧪🧬🖥️ #SpatialBiology
🚨 BIG NEWS! MuSpAn is LIVE! 🚀 The ultimate tool for tackling all your spatial biology questions. Huge congrats to @joshuabull.bsky.social & @josh-moore.bsky.social ❤️👏 Poignant given Spatial proteomics is Technique of the Year 2024
@naturemethods.bsky.social
🎉
📜 www.biorxiv.org/content/10.1...
@naturemethods.bsky.social
🎉
📜 www.biorxiv.org/content/10.1...
Very pleased to announce that our package for Multiscale Spatial Analysis - MuSpAn - has landed!
The preprint is on biorxiv now, but you can find a lot more details at www.muspan.co.uk, including documentation, worked tutorials (an ever-expanding list), install guides, and how to get the code!
The preprint is on biorxiv now, but you can find a lot more details at www.muspan.co.uk, including documentation, worked tutorials (an ever-expanding list), install guides, and how to get the code!
December 11, 2024 at 10:16 AM
🚨 BIG NEWS! MuSpAn is LIVE! 🚀 The ultimate tool for tackling all your spatial biology questions. Huge congrats to @joshuabull.bsky.social & @josh-moore.bsky.social ❤️👏 Poignant given Spatial proteomics is Technique of the Year 2024
@naturemethods.bsky.social
🎉
📜 www.biorxiv.org/content/10.1...
@naturemethods.bsky.social
🎉
📜 www.biorxiv.org/content/10.1...
Some MuSpAn fun with @visualpde.com !
September 26, 2025 at 5:23 PM
Some MuSpAn fun with @visualpde.com !
Would love to hear and talk about muspan and its integration into existing single cell data formats. When are you presenting your poster?
October 14, 2025 at 12:44 PM
Would love to hear and talk about muspan and its integration into existing single cell data formats. When are you presenting your poster?
New slogan: MuSpAn - good enough to kickstart your Bluesky posting
(I clearly have no future career in advertising)
doi.org/10.1101/2024...
(I clearly have no future career in advertising)
doi.org/10.1101/2024...
December 11, 2024 at 11:39 AM
New slogan: MuSpAn - good enough to kickstart your Bluesky posting
(I clearly have no future career in advertising)
doi.org/10.1101/2024...
(I clearly have no future career in advertising)
doi.org/10.1101/2024...
In addition to the two #SpatialBiology posts in the thread below, we're now also advertising for a Research Software Engineer #RSE to help us take #MuSpAn to the next level - come and join us!
my.corehr.com/pls/uoxrecru...
#academic #jobs #softwaredeveloper #compsci
my.corehr.com/pls/uoxrecru...
#academic #jobs #softwaredeveloper #compsci
May 1, 2025 at 2:15 PM
In addition to the two #SpatialBiology posts in the thread below, we're now also advertising for a Research Software Engineer #RSE to help us take #MuSpAn to the next level - come and join us!
my.corehr.com/pls/uoxrecru...
#academic #jobs #softwaredeveloper #compsci
my.corehr.com/pls/uoxrecru...
#academic #jobs #softwaredeveloper #compsci
MuSpAn: A Toolbox for Multiscale Spatial Analysis https://www.biorxiv.org/content/10.1101/2024.12.06.627195v1
December 8, 2024 at 4:31 PM
MuSpAn: A Toolbox for Multiscale Spatial Analysis https://www.biorxiv.org/content/10.1101/2024.12.06.627195v1
MuSpAn is built with #SpatialBiology in mind, from IHC through to #spatialtranscriptomics. I'll be posting a lot of examples of cool things that you can do with it over the next few weeks and months, but for now here's some thoughts off the top of my head...
December 9, 2024 at 2:24 PM
MuSpAn is built with #SpatialBiology in mind, from IHC through to #spatialtranscriptomics. I'll be posting a lot of examples of cool things that you can do with it over the next few weeks and months, but for now here's some thoughts off the top of my head...
I couldn't make it to #SMB2025 this year, but my sources tell me #MuSpAn managed to make the journey over to Canada!
If you enjoyed Sergio's talk, do take a look at docs.muspan.co.uk and see if it'd be useful for your data / agent based models / anything else spatial that you've got lying around!
If you enjoyed Sergio's talk, do take a look at docs.muspan.co.uk and see if it'd be useful for your data / agent based models / anything else spatial that you've got lying around!
July 17, 2025 at 10:29 PM
I couldn't make it to #SMB2025 this year, but my sources tell me #MuSpAn managed to make the journey over to Canada!
If you enjoyed Sergio's talk, do take a look at docs.muspan.co.uk and see if it'd be useful for your data / agent based models / anything else spatial that you've got lying around!
If you enjoyed Sergio's talk, do take a look at docs.muspan.co.uk and see if it'd be useful for your data / agent based models / anything else spatial that you've got lying around!
Want to get more out of your spatial data? 🧪🔬
Check out MuSpAn with our latest release that brings new features, optimisation, more tutorials, a streamlined distribution and bug fixes!
Find out more at docs.muspan.co.uk/latest/relea...
Check out MuSpAn with our latest release that brings new features, optimisation, more tutorials, a streamlined distribution and bug fixes!
Find out more at docs.muspan.co.uk/latest/relea...
Release notes — Multiscale Spatial Analysis
docs.muspan.co.uk
March 6, 2025 at 5:53 PM
Want to get more out of your spatial data? 🧪🔬
Check out MuSpAn with our latest release that brings new features, optimisation, more tutorials, a streamlined distribution and bug fixes!
Find out more at docs.muspan.co.uk/latest/relea...
Check out MuSpAn with our latest release that brings new features, optimisation, more tutorials, a streamlined distribution and bug fixes!
Find out more at docs.muspan.co.uk/latest/relea...
We’re thrilled to introduce MuSpAn!
For researchers in biological imaging, MuSpAn provides tools for Multiscale Spatial Analysis with advanced mathematical methods.
🌟 For more information: www.muspan.co.uk
📝 Preprint: doi.org/10.1101/2024...
We hope you find it as useful as we do! (Poster below)
December 9, 2024 at 2:30 PM
We’re thrilled to introduce MuSpAn!
For researchers in biological imaging, MuSpAn provides tools for Multiscale Spatial Analysis with advanced mathematical methods.
🌟 For more information: www.muspan.co.uk
📝 Preprint: doi.org/10.1101/2024...
We hope you find it as useful as we do! (Poster below)
I'll be at @crick.ac.uk on Monday at the Interphace symposium, talking about MuSpAn, some great interdisciplinary collaborations, and how we can use maths to complement biological research. If you're around, do come and have a chat!
www.crick.ac.uk/whats-on/int...
doi.org/10.1101/2024...
www.crick.ac.uk/whats-on/int...
doi.org/10.1101/2024...
INTERPHACE symposium 2025
www.crick.ac.uk
February 18, 2025 at 5:53 PM
I'll be at @crick.ac.uk on Monday at the Interphace symposium, talking about MuSpAn, some great interdisciplinary collaborations, and how we can use maths to complement biological research. If you're around, do come and have a chat!
www.crick.ac.uk/whats-on/int...
doi.org/10.1101/2024...
www.crick.ac.uk/whats-on/int...
doi.org/10.1101/2024...
MuSpAn is a starting point, not the end stage! We've been working hard to finalise the behind the scenes infrastructure, but now the array of available methods will just keep expanding. In particular, our group works on method development for spatial data - new methods will keep appearing here!
December 9, 2024 at 2:24 PM
MuSpAn is a starting point, not the end stage! We've been working hard to finalise the behind the scenes infrastructure, but now the array of available methods will just keep expanding. In particular, our group works on method development for spatial data - new methods will keep appearing here!
MuSpAn: A Toolbox for Multiscale Spatial Analysis https://www.biorxiv.org/content/10.1101/2024.12.06.627195v1
December 8, 2024 at 4:31 PM
MuSpAn: A Toolbox for Multiscale Spatial Analysis https://www.biorxiv.org/content/10.1101/2024.12.06.627195v1
We wanted to make something a bit abstract that tries to represent MuSpAn, using the MuSpAn package itself. In the end, we thought it'd be fun to add it to our list of tutorials! (docs.muspan.co.uk/latest/tutor...)
You can follow the process of making it here:
docs.muspan.co.uk/latest/_coll...
You can follow the process of making it here:
docs.muspan.co.uk/latest/_coll...
This Week in Mathematical Oncology: MuSpAn artwork — Multiscale Spatial Analysis
docs.muspan.co.uk
March 14, 2025 at 9:29 AM
We wanted to make something a bit abstract that tries to represent MuSpAn, using the MuSpAn package itself. In the end, we thought it'd be fun to add it to our list of tutorials! (docs.muspan.co.uk/latest/tutor...)
You can follow the process of making it here:
docs.muspan.co.uk/latest/_coll...
You can follow the process of making it here:
docs.muspan.co.uk/latest/_coll...
The cover art for this week's "This Week in Math Onco" newsletter has come straight out of MuSpAn!
thisweekmathonco.substack.com/p/this-week-...
Preprint here: doi.org/10.1101/2024...
thisweekmathonco.substack.com/p/this-week-...
Preprint here: doi.org/10.1101/2024...
This week in MathOnco 324
CAR-T, circulating tumor DNA, EMT transitions, ecological and evolutionary models...
thisweekmathonco.substack.com
March 14, 2025 at 9:29 AM
The cover art for this week's "This Week in Math Onco" newsletter has come straight out of MuSpAn!
thisweekmathonco.substack.com/p/this-week-...
Preprint here: doi.org/10.1101/2024...
thisweekmathonco.substack.com/p/this-week-...
Preprint here: doi.org/10.1101/2024...