Discover #GNPS2 - join our 4-hour online course 10/23, 9am, with Prof Mingxun Wang, register and pay: na.eventscloud.com/ereg/index.p...
💡User-friendly, perfect for researchers ready to upgrade their data analysis skills.
#MassSpectrometry #Metabolomics #Bioinformatics
@mingxunwang.bsky.social
💡User-friendly, perfect for researchers ready to upgrade their data analysis skills.
#MassSpectrometry #Metabolomics #Bioinformatics
@mingxunwang.bsky.social
October 7, 2025 at 9:35 PM
Discover #GNPS2 - join our 4-hour online course 10/23, 9am, with Prof Mingxun Wang, register and pay: na.eventscloud.com/ereg/index.p...
💡User-friendly, perfect for researchers ready to upgrade their data analysis skills.
#MassSpectrometry #Metabolomics #Bioinformatics
@mingxunwang.bsky.social
💡User-friendly, perfect for researchers ready to upgrade their data analysis skills.
#MassSpectrometry #Metabolomics #Bioinformatics
@mingxunwang.bsky.social
If you’re attending #metsoc2025 and interested in legume biology, stop by at poster #1228 to see how we putatively annotated new chloroauxin derivatives using computational metabolomics @gnps2.bsky.social, among other interesting metabolites @metsoc.bsky.social
June 24, 2025 at 9:13 AM
If you’re attending #metsoc2025 and interested in legume biology, stop by at poster #1228 to see how we putatively annotated new chloroauxin derivatives using computational metabolomics @gnps2.bsky.social, among other interesting metabolites @metsoc.bsky.social
Super excited to introduce our recent work published in @natprot.nature.com today. Here we introduce a step-by-step protocol for applying multiple data analysis workflows in GNPS2 for drug metabolism studies.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
A versatile toolkit for drug metabolism studies with GNPS2: from drug development to clinical monitoring - Nature Protocols
This protocol extension guides users in identifying candidate drug metabolites without prior knowledge by analyzing tandem mass spectrometry data in the web-based molecular networking tool GNPS2.
www.nature.com
September 8, 2025 at 2:55 PM
Super excited to introduce our recent work published in @natprot.nature.com today. Here we introduce a step-by-step protocol for applying multiple data analysis workflows in GNPS2 for drug metabolism studies.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
"You will be visited by three spirits"...
Meanwhile, the three spirits:
#metabolomics #TeamMassSpec #chemsky
Meanwhile, the three spirits:
#metabolomics #TeamMassSpec #chemsky
December 25, 2024 at 8:46 AM
Workshop "MS-based #metabolomics for #cyanobacteria metabolites", during #ICTC13 (4 May 25). Speakers: @daniel-petras.bsky.social, @siliakop.bsky.social
Free with a student registration in ICTC13.
@func-metabo-lab.bsky.social @gnps2.bsky.social #MZmine #GNPS2 #TeamMassSpec
More: www.ictc13.gr
Free with a student registration in ICTC13.
@func-metabo-lab.bsky.social @gnps2.bsky.social #MZmine #GNPS2 #TeamMassSpec
More: www.ictc13.gr
November 27, 2024 at 5:37 AM
Workshop "MS-based #metabolomics for #cyanobacteria metabolites", during #ICTC13 (4 May 25). Speakers: @daniel-petras.bsky.social, @siliakop.bsky.social
Free with a student registration in ICTC13.
@func-metabo-lab.bsky.social @gnps2.bsky.social #MZmine #GNPS2 #TeamMassSpec
More: www.ictc13.gr
Free with a student registration in ICTC13.
@func-metabo-lab.bsky.social @gnps2.bsky.social #MZmine #GNPS2 #TeamMassSpec
More: www.ictc13.gr
To help make more mass spec data accessible - we've just rolled out a change to enable universal spectrum identifier resolution and plotting directly from mzML files in Zenodo. We're growing support from more sources in GNPS2 for public data reanalysis!
metabolomics-usi.gnps2.org/dashinterfac...
metabolomics-usi.gnps2.org/dashinterfac...
September 9, 2025 at 10:34 PM
To help make more mass spec data accessible - we've just rolled out a change to enable universal spectrum identifier resolution and plotting directly from mzML files in Zenodo. We're growing support from more sources in GNPS2 for public data reanalysis!
metabolomics-usi.gnps2.org/dashinterfac...
metabolomics-usi.gnps2.org/dashinterfac...
Looks like the file summary of gnps2 is down.. @mingxunwang.bsky.social cheers
July 20, 2025 at 6:38 PM
Looks like the file summary of gnps2 is down.. @mingxunwang.bsky.social cheers
Thanks to all #NPLinker #eScience #Workshop 2025 participants for coming to #Wageningen this week to learn about and gaining hands-on experience with paired omics mining based! 😎
@marnixmedema.bsky.social and I wish everyone a safe trip home!
#GNPS2 #BiGSCAPE2
@esciencecenter.bsky.social
@marnixmedema.bsky.social and I wish everyone a safe trip home!
#GNPS2 #BiGSCAPE2
@esciencecenter.bsky.social
March 28, 2025 at 5:08 PM
Thanks to all #NPLinker #eScience #Workshop 2025 participants for coming to #Wageningen this week to learn about and gaining hands-on experience with paired omics mining based! 😎
@marnixmedema.bsky.social and I wish everyone a safe trip home!
#GNPS2 #BiGSCAPE2
@esciencecenter.bsky.social
@marnixmedema.bsky.social and I wish everyone a safe trip home!
#GNPS2 #BiGSCAPE2
@esciencecenter.bsky.social
A versatile toolkit for drug metabolism studies with GNPS2: from drug development to clinical monitoring #nature #MassSpecRSS
A versatile toolkit for drug metabolism studies with GNPS2: from drug development to clinical monitoring - Nature Protocols
This protocol extension guides users in identifying candidate drug metabolites without prior knowledge by analyzing tandem mass spectrometry data in the web-based molecular networking tool GNPS2.
dlvr.it
September 9, 2025 at 2:07 AM
A versatile toolkit for drug metabolism studies with GNPS2: from drug development to clinical monitoring #nature #MassSpecRSS
Such a wonderful SIMB workshop on @gnps2.bsky.social covering classical mol networking, FBMN, ion identity based mol networking, FBMN-STATS, gnps-dashboard, CMMC-kb, Modifinder, MicrobeMASST, MassQL, and limited ReDU - many were covered at a workshop for the first time. 1/4
January 8, 2025 at 7:18 PM
Such a wonderful SIMB workshop on @gnps2.bsky.social covering classical mol networking, FBMN, ion identity based mol networking, FBMN-STATS, gnps-dashboard, CMMC-kb, Modifinder, MicrobeMASST, MassQL, and limited ReDU - many were covered at a workshop for the first time. 1/4
also there is no link with the exact library in GNPS; just a number not easy to retrive only by the smile of the molecule name///
gnps2.org/result?task=...
gnps2.org/result?task=...
July 7, 2025 at 2:33 PM
also there is no link with the exact library in GNPS; just a number not easy to retrive only by the smile of the molecule name///
gnps2.org/result?task=...
gnps2.org/result?task=...
Anyone from MAssQL? CANNOT get through the filtering option in gnps2?
@mingxunwang.bsky.social
If you have time, the mzml is fine for gnps2 but somehow does not pass the filtering before if added before.
gnps2.org/status?task=...
Thank you for any help from the community too.
@mingxunwang.bsky.social
If you have time, the mzml is fine for gnps2 but somehow does not pass the filtering before if added before.
gnps2.org/status?task=...
Thank you for any help from the community too.
June 26, 2025 at 12:10 PM
Anyone from MAssQL? CANNOT get through the filtering option in gnps2?
@mingxunwang.bsky.social
If you have time, the mzml is fine for gnps2 but somehow does not pass the filtering before if added before.
gnps2.org/status?task=...
Thank you for any help from the community too.
@mingxunwang.bsky.social
If you have time, the mzml is fine for gnps2 but somehow does not pass the filtering before if added before.
gnps2.org/status?task=...
Thank you for any help from the community too.
The CMMC is hosting a reverse metabolomics workshop. The foundation of these papers www.nature.com/articles/s41..., www.cell.com/cell/fulltex... and www.biorxiv.org/content/10.1... - here searched @gnps2.bsky.social only now @metabolights.bsky.social and @metabolomics workbench as well. #metabolome
December 3, 2024 at 8:16 PM
The CMMC is hosting a reverse metabolomics workshop. The foundation of these papers www.nature.com/articles/s41..., www.cell.com/cell/fulltex... and www.biorxiv.org/content/10.1... - here searched @gnps2.bsky.social only now @metabolights.bsky.social and @metabolomics workbench as well. #metabolome
GNPS2 and associated services will be down for power maintenance tonight and into tomorrow.
August 2, 2025 at 4:48 AM
GNPS2 and associated services will be down for power maintenance tonight and into tomorrow.
GNPS2 is planning on being down for server maintenance tomorrow at 12PM PST. We expect 5 hours of downtime to move servers, bring online new storage, and increase networking performance.
March 5, 2025 at 3:45 AM
GNPS2 is planning on being down for server maintenance tomorrow at 12PM PST. We expect 5 hours of downtime to move servers, bring online new storage, and increase networking performance.
Known and new bartoloside derivatives from #cyanobacteria.
By the group of Pedro Leão @ciimar.bsky.social
doi.org/10.1021/acs....
#TeamMassSpec @gnps2.bsky.social
By the group of Pedro Leão @ciimar.bsky.social
doi.org/10.1021/acs....
#TeamMassSpec @gnps2.bsky.social
Expanding the Diversity of the Cyanobacterial Dialkylresorcinol Bartoloside Family
The cyanobacterial dialkylresorcinol bartolosides were initially reported to feature glycosylated and halogenated moieties. Later, biosynthetic and in vitro studies showed that the chlorinated alkyl c...
doi.org
November 28, 2024 at 5:39 AM
Known and new bartoloside derivatives from #cyanobacteria.
By the group of Pedro Leão @ciimar.bsky.social
doi.org/10.1021/acs....
#TeamMassSpec @gnps2.bsky.social
By the group of Pedro Leão @ciimar.bsky.social
doi.org/10.1021/acs....
#TeamMassSpec @gnps2.bsky.social
February 24, 2025 at 6:28 PM
lol, In 2020 MASST was not as informative as now. It is completely redone from that original work. If you do ASST use the gnps2 version. It the original one. Now we can search across metabolights, metabolomics WB and gnps/massive and other resources are being made compatible.
January 19, 2025 at 3:28 AM
lol, In 2020 MASST was not as informative as now. It is completely redone from that original work. If you do ASST use the gnps2 version. It the original one. Now we can search across metabolights, metabolomics WB and gnps/massive and other resources are being made compatible.
13/n well how easy is to retrieve its MS2 data now we know about the little m/z 85.0293
Just take our oxALA data (ALA precursor of those trioxilins), used MASSQL in gnps2 “QUERY scaninfo(MS2DATA) WHERE MS2PREC=327.2177:TOLERANCEPPM=10 AND MS2PROD=85:TOLERANCEMZ=0.5”
gnps2.org/dashboards/n...
Just take our oxALA data (ALA precursor of those trioxilins), used MASSQL in gnps2 “QUERY scaninfo(MS2DATA) WHERE MS2PREC=327.2177:TOLERANCEPPM=10 AND MS2PROD=85:TOLERANCEMZ=0.5”
gnps2.org/dashboards/n...
February 18, 2025 at 5:32 PM
13/n well how easy is to retrieve its MS2 data now we know about the little m/z 85.0293
Just take our oxALA data (ALA precursor of those trioxilins), used MASSQL in gnps2 “QUERY scaninfo(MS2DATA) WHERE MS2PREC=327.2177:TOLERANCEPPM=10 AND MS2PROD=85:TOLERANCEMZ=0.5”
gnps2.org/dashboards/n...
Just take our oxALA data (ALA precursor of those trioxilins), used MASSQL in gnps2 “QUERY scaninfo(MS2DATA) WHERE MS2PREC=327.2177:TOLERANCEPPM=10 AND MS2PROD=85:TOLERANCEMZ=0.5”
gnps2.org/dashboards/n...
Cool to see the metabolic side of the NWO-XL project
The cool GNPS2 network reminded me that @jjjvanderhooft.bsky.social is within the project 🤗
The cool GNPS2 network reminded me that @jjjvanderhooft.bsky.social is within the project 🤗
October 7, 2025 at 8:50 AM
Cool to see the metabolic side of the NWO-XL project
The cool GNPS2 network reminded me that @jjjvanderhooft.bsky.social is within the project 🤗
The cool GNPS2 network reminded me that @jjjvanderhooft.bsky.social is within the project 🤗
GNPS2 will be down for the next hour for a new release update!
January 28, 2025 at 8:13 PM
GNPS2 will be down for the next hour for a new release update!
Have a burning compound identification question? Drop by our office hours on Tuesdays from 12-1 pm Eastern to discuss with our team.
Sign up here: www.ometalabs.net/contact
Note: if you're an academic, check out the GNPS2 office hours here: wang-bioinformatics-lab.github.io/GNPS2_Docume...
Sign up here: www.ometalabs.net/contact
Note: if you're an academic, check out the GNPS2 office hours here: wang-bioinformatics-lab.github.io/GNPS2_Docume...
Contact — Ometa Labs
Get in touch! Drop in for office hours or schedule a meet and greet to discuss your small molecule analysis needs with Ometa's expert team.
www.ometalabs.net
March 27, 2025 at 2:17 PM
Have a burning compound identification question? Drop by our office hours on Tuesdays from 12-1 pm Eastern to discuss with our team.
Sign up here: www.ometalabs.net/contact
Note: if you're an academic, check out the GNPS2 office hours here: wang-bioinformatics-lab.github.io/GNPS2_Docume...
Sign up here: www.ometalabs.net/contact
Note: if you're an academic, check out the GNPS2 office hours here: wang-bioinformatics-lab.github.io/GNPS2_Docume...
Starting now! Mass-spectrometry #metabolomics workshop in the frame of #ICTC13. Daniel Petras @daniel-petras.bsky.social Robin Schmid @robinschmid.bsky.social Corinna Brungs, Sofia Iliakopoulou. @mzmine.bsky.social @gnps2.bsky.social . #teammassspec
May 4, 2025 at 11:33 AM
Starting now! Mass-spectrometry #metabolomics workshop in the frame of #ICTC13. Daniel Petras @daniel-petras.bsky.social Robin Schmid @robinschmid.bsky.social Corinna Brungs, Sofia Iliakopoulou. @mzmine.bsky.social @gnps2.bsky.social . #teammassspec
From gnps2 of course into cytoscape
June 21, 2025 at 6:48 AM
From gnps2 of course into cytoscape
Let's see how #mzmine, #GNPS2, #Sirius, #Cytoscape, will run in this one!
@gnps2.bsky.social
#TeamMassSpec
@gnps2.bsky.social
#TeamMassSpec
December 17, 2024 at 7:10 PM
Let's see how #mzmine, #GNPS2, #Sirius, #Cytoscape, will run in this one!
@gnps2.bsky.social
#TeamMassSpec
@gnps2.bsky.social
#TeamMassSpec