#EnzymeDesign
Done for today
#teaching #biomoleculardesign #enzymedesign #pymol

Who can guess the enzyme?
September 23, 2025 at 8:16 PM
✨Millions of years of evolution unlocked! Scientists are now *designing* optimal enzymes from scratch!🤯 A new era for biology & chemistry!🔬 #EnzymeDesign

Source: https://phys.org/news/2025-05-enzymes-universal-optimal-enzyme.html
Assembly instructions for enzymes: Universal rules can help to design an optimal enzyme from scratch
In biology, enzymes have evolved over millions of years to drive chemical reactions. Scientists from the Max Planck Institute for Dynamics and Self-Organization (MPI-DS) have now derived universal rules to enable the de novo design of optimal enzymes.
phys.org
May 26, 2025 at 2:03 PM
Together, our findings reveal how distal mutations sculpt enzyme function by reshaping the catalytic cycle for more efficient catalysis.

What does this mean for enzyme design? Find out in our preprint: www.biorxiv.org/content/10.1...
#Enzymology #Biophysics #Catalysis #EnzymeDesign
Distal mutations in a designed retro-aldolase alter loop dynamics to shift and accelerate the rate-limiting step
Amino-acid residues distant from an enzyme’s active site are known to influence catalysis, but their mechanistic contributions to the catalytic cycle remain poorly understood. Here, we investigate the...
www.biorxiv.org
February 27, 2025 at 9:16 PM
📣We offer a #PhDposition in #MachineLearning for #EnzymeDesign in Mehdi Davari's group. Funded within the Priority Programme SPP2363 “Molecular Machine Learning” by @dfg.de.

🔗All information: www.ipb-halle.de/en/career/jo...

📅Apply now!

#Bioinformatics
#Chemoinformatics
#Joboffer
#Scijobs
May 19, 2025 at 12:09 PM
🚨Out now in Angewandte Chemie:

AI.zymes - A modular platform for evolutionary enzyme design.

AI.zymes integrates established and emerging bioengineering tools into a coherent pipeline for #enzymedesign.

📄Paper: doi.org/10.1002/anie...
💻GitHub: github.com/bunzela/AIzy...
April 30, 2025 at 5:35 PM
Happy to announce our latest article on #enzymedesign, in collaboration with Mike Thompson's group! Check it out in JACS:

Design of Efficient Artificial Enzymes Using Crystallographically Enhanced Conformational Sampling

pubs.acs.org/doi/full/10....
March 28, 2024 at 2:49 PM
Ammonia is key to fertilizers and essential to feed the world.🌍Its industrial production consumes ~2% of the global energy.
In this fully funded PhD project, you'll combine #enzymedesign and #directedevolution to turn nitrogen into ammonia.💡🌱
March 25, 2025 at 8:52 AM
Keynote by Don Hilvert 🧪 Mastering enzyme design and evolution — from mechanistic insights to de novo biocatalysts. A true pioneer in protein engineering! #CSSB25 #EnzymeDesign #ProteinEngineering
June 12, 2025 at 1:52 PM
🚨Preprint Alert!🚨

#ProteinDesign is advancing rapidly—wouldn't it be great to seamlessly combine design tools to achieve more than what each can do alone?🤔

Here, we introduce AI.zymes: A modular platform for evolutionary #EnzymeDesign.♻️🖥️

biorxiv.org/content/10.1...
1/🧵
February 12, 2025 at 7:01 PM
Biomatter Raises €6.5M to Revolutionize #EnzymeDesign with #GenerativeAI: With fresh funding, Biomatter aims to revolutionize enzyme creation using its Intelligent Architecture™ platform, enabling rapid innovation across multiple industries. #synbio
Biomatter Raises €6.5M to Revolutionize Enzyme Design with Generative AI
www.synbiobeta.com
August 5, 2024 at 1:32 PM
Why borrow from nature when you can build better? Scientists just created enzymes from scratch — unlocking cleaner, smarter chemistry. #EnzymeDesign #GreenChemistry #SyntheticBiology
Designing Life’s Catalysts: Scientists Build Enzymes from Scratch
Researchers have developed a workflow to design enzymes from scratch — enabling greener chemistry, novel reactions, and tailor-made catalysts that rival nature’s best.
geekoo.news
May 15, 2025 at 3:00 AM
In collaboration with @birtehoecker.bsky.social, we’ve unlocked enzymatic activity in a minimal de novo TIM barrel by designing a custom lid for catalysis! 🧵👇
#ProteinDesign #EnzymeDesign

Customizing the Structure of a Minimal TIM Barrel to Create a De Novo Enzyme
www.biorxiv.org/content/10.1...
Customizing the Structure of a Minimal TIM Barrel to Craft a De Novo Enzyme
The TIM barrel is the most prevalent fold in natural enzymes, supporting efficient catalysis of diverse chemical reactions. While de novo TIM barrels have been successfully designed, their minimalisti...
www.biorxiv.org
July 29, 2025 at 6:33 PM
AI.zymes was developed primarily by Master students at
ETH Zurich and U Bristol!

Thanks to Lucas, Jannik, Abbie, Vivienne, Moor, Tudor, and Adrian for advancing #enzymedesign and bringing AI.zymes to life!🎉
February 12, 2025 at 7:01 PM