#CLN3
NEW research from @johnfoxe.bsky.social shows that CLN3 disease causes vision, language, & thinking loss. In mouse studies, brain responses differed by sex & age, showing MMN as a useful marker to track Batten disease progress.
doi.org/10.1186/s116... #URochesterResearch @urneuroscience.bsky.social
Sex-specific and age-related progression of auditory neurophysiological deficits in the Cln3 mouse model of Batten disease - Journal of Neurodevelopmental Disorders
Background CLN3 disease, also known as juvenile Batten disease, is a recessively inherited neurodevelopmental disorder caused by mutations in the CLN3 gene. It represents the most common form of…
doi.org
November 17, 2025 at 5:04 PM
New roles for lysosomes... and maybe new targets for Batten disease?

Loss of the lysosomal protein CLN3 triggers c-Abl-dependent YAP1 pro-apoptotic signaling | EMBO reports www.embopress.org/doi/full/10....
Loss of the lysosomal protein CLN3 triggers c-Abl-dependent YAP1 pro-apoptotic signaling | EMBO reports
imageimageLoss of Batten disease-associated lysosomal protein CLN3 leads to DNA damage and activation of c-Abl-YAP1-dependent pro-apoptotic signaling which underlies increased apoptosis susceptibility...
www.embopress.org
November 7, 2025 at 12:03 PM
CLN3 Batten disease is a lysosomal storage disease affecting children when they are 4-8 years old. They will experience vision loss, seizures, loss of speech, motor function loss and cognitive decline. The vision loss is progressive, with functional blindness occurring 2-3 years post symptom onset
November 17, 2025 at 8:58 AM
Genetic and cellular basis of impaired phagocytosis and photoreceptor degeneration in CLN3 disease. https://www.biorxiv.org/content/10.1101/2024.06.09.597388v1
Genetic and cellular basis of impaired phagocytosis and photoreceptor degeneration in CLN3 disease. https://www.biorxiv.org/content/10.1101/2024.06.09.597388v1
Purpose: CLN3 disease is a lysosomal storage disorder that leads to retinal degeneration. CLN3 disea
www.biorxiv.org
June 9, 2024 at 7:30 PM
- Heartbreak at 'family-destroying' disease of girl, 11

Highlights:
- Anna Roberts, 11, has CLN3 strain of Batten Disease. She is one of just 39 people in the UK with...

#GeneralNews
- Source: BBC
What do you think?
January 20, 2025 at 4:17 AM
Loss of the lysosomal protein CLN3 modifies the lipid content of the nuclear envelope leading to DNA damage and activation of YAP1 pro-apoptotic signaling

biorxiv.org/content/10.110…
Loss of the lysosomal protein CLN3 modifies the lipid content of the nuclear envelope leading to DNA damage and activation of YAP1 pro-apoptotic signaling
Batten disease is characterized by early-onset blindness, juvenile dementia and death during the second decade of life. The most common genetic causes are mutations in the CLN3 gene encoding a lysosomal protein. There are currently no therapies targeting the progression of the disease, mostly due to the lack of knowledge about the disease mechanisms. To gain insight into the impact of CLN3 loss on cellular signaling and organelle function, we generated CLN3 knock-out cells in a human cell line (CLN3-KO), and performed RNA sequencing to obtain the cellular transcriptome. Following a multi-dimensional transcriptome analysis, we identified the transcriptional regulator YAP1 as a major driver of the transcriptional changes observed in CLN3-KO cells. We further observed that YAP1 pro-apoptotic signaling is hyperactive as a consequence of CLN3 functional loss in retinal pigment epithelia cells, and in the hippocampus and thalamus of CLN3exΔ7/8 mice, an established model of Batten disease. Loss of CLN3 activates YAP1 by a cascade of events that starts with the inability of releasing glycerophosphodiesthers from CLN3-KO lysosomes, which leads to perturbations in the lipid content of the nuclear envelope and nuclear dysmorphism. This results in increased number of DNA lesions, activating the kinase c-Abl, which phosphorylates YAP1, stimulating its pro-apoptotic signaling. Altogether, our results highlight a novel organelle crosstalk paradigm in which lysosomal metabolites regulate nuclear envelope content, nuclear shape and DNA homeostasis. This novel molecular mechanism underlying the loss of CLN3 in mammalian cells and tissues may open new c-Abl-centric therapeutic strategies to target Batten disease. ### Competing Interest Statement The authors have declared no competing interest.
www.biorxiv.org
December 9, 2024 at 10:12 PM
Thoughts on this? >> Gene therapy to treat CLN3 disease neuromuscular
manifestations - BioWorld MedTech >> Comment below! #strategy #competitiveintelligence #marketing #pharmaceutical #competitivemarketing #biotech #healthcare #pharma
Gene therapy to treat CLN3 disease neuromuscular manifestations - BioWorld MedTech
Gene therapy to treat CLN3 disease neuromuscular manifestations  BioWorld MedTech
dlvr.it
August 13, 2025 at 3:59 PM
Loss of CLN3 in microglia leads to impaired lipid metabolism and myelin turnover https://www.biorxiv.org/content/10.1101/2024.02.01.578018v1
Loss of CLN3 in microglia leads to impaired lipid metabolism and myelin turnover https://www.biorxiv.org/content/10.1101/2024.02.01.578018v1
Background: Microglia are the primary brain cell type regulating neuroinflammation and they are impo
www.biorxiv.org
February 2, 2024 at 6:20 PM
Authors have tested exon 5 skipping ASOs in the brains of Cln3 exon 7-8 deleted mice, but for the eyes mice are not optimal animals, as this model does not experience much eye pathology. Thus authors generated an exon 7-8 Cln3 deleted mini-pig model.
November 17, 2025 at 9:01 AM
An exciting week for the lab with a paper submitted, exciting new data, and our latest MSc student to successfully defend their thesis. Congratulations to Amelinda, who developed an iPSC patient-derived neuronal cell model of CLN3 Batten Disease!! 🎉
April 5, 2025 at 1:15 AM
- Mother's heartbreak that daughter may not live past teens due to disease

Highlights:
- Anna Roberts, 11, has CLN3 strain of Batten Disease. She is one of just 39 people in the UK with...

#GeneralNews
- Source: BBC
What do you think?
January 20, 2025 at 7:08 AM
Therapeutic antisense oligonucleotide mitigates retinal dysfunction in a pig model of CLN3 Batten disease https://www.biorxiv.org/content/10.1101/2025.05.30.656864v1
June 1, 2025 at 3:17 AM
🎧 New podcast 🎙️

Lottie Morison discusses recent insights around speech and language progression and assessment in CLN2 and CLN3 disease.

Soundcloud: soundcloud.com/user-1090061...

Spotify: open.spotify.com/episode/6sIU...
Or search for JIMD Podcasts
June 24, 2025 at 1:40 PM
They also discuss that in case of CLN3 Batten patients are usually diagnosed when they present with symptoms. They here only showed ASO treatment could prevent retinal degeneration, while in patients treatment would start when degeneration had already started.
November 17, 2025 at 9:14 AM
New paper presents ‘tagless LysoIP’ method, which enables enrichment of lysosomes (using TMEM192) directly from clinical samples & human cell lines; Metabolic profiling shows accumulation of glycerophosphodiesters in CLN3 patients; New tool for #Parkinsons research
www.jci.org/articles/vie...
December 27, 2024 at 1:27 PM
#23Daysof4AD
#MusicChallenge
23 Kristin Hersh - White Bikini Sand
In 2005 when 4AD went 25 there were 2 concerts in London by Kristin Hersh. A friend and I went to the first one, in Scala near Kings Cross.
Crappy video but it's the only one I could find of that night
www.youtube.com/watch?v=ClN3...
Kristin Hersh sings (most of) White Bikini Sand, Nov 21 2005
YouTube video by scarebear2
www.youtube.com
January 23, 2025 at 7:04 AM
Cln3 can work independently of Whi5 on the cell size for Start in yeast https://www.biorxiv.org/content/10.1101/2025.10.24.684447v1
October 25, 2025 at 10:33 AM
Loss of the lysosomal protein CLN3 modifies the lipid content of the nuclear envelope leading to DNA damage and activation of YAP1 pro-apoptotic signaling https://www.biorxiv.org/content/10.1101/2024.05.31.596474v1
Loss of the lysosomal protein CLN3 modifies the lipid content of the nuclear envelope leading to DNA damage and activation of YAP1 pro-apoptotic signaling https://www.biorxiv.org/content/10.1101/2024.05.31.596474v1
Batten disease is characterized by early-onset blindness, juvenile dementia and death during the sec
www.biorxiv.org
June 1, 2024 at 2:30 PM
Pleased to share the latest pre-print from the PSDL highlighting enteric and neuromuscular disease & myopathy in CLN3 mice treated by gene therapy. From talented PSDL postdoc Ewa Ziółkowska. Work done with Bob Heuckeroth and Alison Snyder-Warwick #battendisease
www.biorxiv.org/content/10.1...
Identifying and treating CLN3 disease outside the central nervous system
CLN3 disease causes profound neurological deficits in affected children, but less well recognized are a variety of peripheral neuromuscular and gastrointestinal problems. We hypothesized that in addit...
www.biorxiv.org
February 2, 2025 at 10:53 PM
A Timeline of Symptom Onset and Disease Progression in CLN3 Disease https://www.medrxiv.org/content/10.1101/2025.08.31.25334748v1
September 3, 2025 at 12:26 AM
A preprint using: B6.129S6-Cln3tm (RRID:IMSR_JAX:029471) was published.

SciScore made a table with this resource, see “Automated Services” module (download as csv, xml or #jats) #RRID #STMpublishing
Sex-specific and age-related progression of auditory neurophysiological deficits in the Cln3 mouse model of Batten disease
www.biorxiv.org
March 22, 2025 at 12:02 PM
Identifying and treating CLN3 disease outside the central nervous system https://www.biorxiv.org/content/10.1101/2025.01.29.635518v1
January 30, 2025 at 8:15 AM
Loss of the lysosomal protein CLN3 modifies the lipid content of the nuclear envelope leading to DNA damage and activation of YAP1 pro-apoptotic signaling https://www.biorxiv.org/content/10.1101/2024.05.31.596474v1
Loss of the lysosomal protein CLN3 modifies the lipid content of the nuclear envelope leading to DNA damage and activation of YAP1 pro-apoptotic signaling https://www.biorxiv.org/content/10.1101/2024.05.31.596474v1
Batten disease is characterized by early-onset blindness, juvenile dementia and death during the sec
www.biorxiv.org
June 1, 2024 at 2:30 PM
Loss of CLN3 in microglia leads to impaired lipid metabolism and myelin turnover https://www.biorxiv.org/content/10.1101/2024.02.01.578018v1
Loss of CLN3 in microglia leads to impaired lipid metabolism and myelin turnover https://www.biorxiv.org/content/10.1101/2024.02.01.578018v1
Background: Microglia are the primary brain cell type regulating neuroinflammation and they are impo
www.biorxiv.org
February 2, 2024 at 6:20 PM
Targeted long-read RNA sequencing reveals the complexity of CLN3 transcription and the consequences of the most common 1-kb deletion in patients with juvenile CLN3 disease https://www.biorxiv.org/content/10.1101/2025.04.24.650398v1
April 25, 2025 at 6:32 AM