#BioimageAnalysis
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david-j-barry.bsky.social
#BioImageAnalysis Job Alert!

As it happens, I was in Helsinki in August for the first time in about 20 years - it's delightful.

But I'm not entirely sure the image below is entirely representative of the role...

jobs.helsinki.fi/job/Helsinki...
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
jobs.helsinki.fi
November 6, 2025 at 8:34 PM
focalplane.bsky.social
Incoming deadline - 7 November 2025

Apply for a @jcellsci.bsky.social @focalplane.bsky.social Training Grant to support your attendance at a #microscopy or #bioimageanalysis training course.

Open to ECRs in #cellbio. For more info: www.biologists.com/grants/jcs-f...
Microscopy Training Grants Supporting microscopy training for early-career researchers in cell biology Apply for a grant of up to £1,000 Cartoon of a person looking down a microscope, which is next to a computer Journal of Cell Science logo and FocalPlane logo
November 5, 2025 at 11:54 AM
biovoxxel.de
Colocalization isn't just "overlap"—it's potentially 4 distinct analyses or more.

Check out how to dissect colocalization analysis and get a glance on pitfalls and methods to report robust colocalization results.

Read newsletter now! bit.ly/46mYBL7

#Microscopy #BioImageAnalysis #Colocalization
November 5, 2025 at 9:10 AM
mycroscopy.bsky.social
Time to report the progress of two hackathons, taggaton and training school #GloBIAS2025 #GloBIAS #BioimageAnalysis @globias.bsky.social
October 30, 2025 at 4:07 AM
mycroscopy.bsky.social
Opening of the networking dinner by traditional sake opening ceremony
#GloBIAS2025 #BioimageAnalysis @kbias.bsky.social @globias.bsky.social
Four men opening sake barrel in a ceremonial way
October 30, 2025 at 2:49 AM
cbias.bsky.social
A month to go! Will you be at #CBIAS2025?

The program is almost ready, and we look forward to welcoming you in London to discuss all things #BioImageAnalysis, from tool development, to biomedical applications and community building.

Register now! 🔗⬇️

www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
October 24, 2025 at 8:48 AM
globalcmd.bsky.social
Hardest pixel in bio? When organoids touch.
Knowledge-driven DL: hybrid labels + multimodal encoder (temporal+freq) + decoupled tracking + hysteresis split.👇
https://glcnd.io/advancing-organoid-morphological-segmentation-with-a-knowledge-driven-deep-learning-framework/
#Organoids #BioimageAnalysis
Advancing Organoid Morphological Segmentation with a Knowledge-Driven Deep Learning Framework - GLCND.IO
glcnd.io
October 23, 2025 at 11:10 PM
gerbi-gmb.de
🔬 Join us in Leipzig!

The #YMIA panel discussion "The Power of Sharing: Open Data in Bio-image Analysis" is happening in person at UFZ Leipzig on Friday!

Organized by the Young Microscopists & Image Analysts (YMIA) Team, part of the GerBI community.

#BioImageAnalysis #Microscopy #OpenData
October 22, 2025 at 7:27 AM
david-j-barry.bsky.social
🇬🇧 Are you based in the UK?
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑‍🤝‍🧑 Want to spend time supporting external users?

The UK BioImage Analysis Network (UK-BIAS) might be for you.

Apply below before November 5th.

forms.gle/XhP15nxg2ZgW...
Expression of Interest: UK Bioimage Analysis Network (UK-BIAS)
The UK node of Euro-BioImaging, a major European initiative providing open access to biological and biomedical imaging technologies, currently offers assistance with Biological Image Data Analysis. Ho...
forms.gle
October 21, 2025 at 8:35 AM
biapyx.bsky.social
This is a new step for accessible, FAIR bioimage AI 🚀

Try the tool 👉 imaging.usegalaxy.eu?tool_id=tool...

Contribute your models 🧑‍🔬 And join the community making bioimage analysis open & reproducible!

#BiaPy #GalaxyProject #BioImageAnalysis #Bioimaging
Galaxy
Galaxy is a community-driven web-based analysis platform for life science research.
imaging.usegalaxy.eu
October 20, 2025 at 2:11 PM
biapyx.bsky.social
🚀 Big news: BiaPy meets @galaxyproject.bsky.social! ⛴️🤝🌌

You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone.

👉 imaging.usegalaxy.eu?tool_id=tool...

#BioImageAnalysis #GalaxyProject #AI4Life #Bioimaging
Galaxy
Galaxy is a community-driven web-based analysis platform for life science research.
imaging.usegalaxy.eu
October 20, 2025 at 2:11 PM
damiandn.bsky.social
As part of our monthly meeting, we do a run-down of all* the new #bioimageanalysis tools that have been published in the last couple of weeks on BioRxiv**, so I thought I'd start sharing here as well.

*I will miss some, apologies if I miss your paper
October 17, 2025 at 7:17 AM
bethcimini.bsky.social
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
A flyer for the Bioimage Analysis Beginnings Bootcamp - blue and white with a picture of cells on the top. It says "Learn core bioimage analysis skills using open-source tools for light microscopy. Open to participants at all skill levels." It also says it will be held a the Broad Institute, 415 Main Street, Cambridge MA USA, on Monday to Friday January 12th-16, 2026, from 9-5pm. Registration is $750 academic, $1250 industry, and applications are open at broad.io/BAB3
October 14, 2025 at 9:31 PM
jytinevez.bsky.social
Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.

I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social

research.pasteur.fr/en/team/imag...
⬇️
October 13, 2025 at 8:10 AM
bethcimini.bsky.social
#bioimageanalysis wouldn't be the same without all the great RSEs who make our tools and keep them working! Great paper on this from a couple of years ago linked below - if there's a tool that makes your life easier, think about taking a few minutes today to thank the person or people who make it!
October 9, 2025 at 3:47 PM
iarganda.bsky.social
✨ Fantastic opportunity for people looking for image facility jobs! What better than working with the awesome @jytinevez.bsky.social in Paris? 🤩

#bioimaging #bioimageanalysis #facilityjob

👇
October 8, 2025 at 8:01 AM
dgaboriau.bsky.social
Top position in Paris with Jean-Yves @jytinevez.bsky.social

#bioimageanalysis 🔬
October 7, 2025 at 2:29 PM
iarganda.bsky.social
In case someone prefers to apply this way, I also opened a LinkedIn job offer:

www.linkedin.com/jobs/view/43...

#phd #bioimaging #deeplearning #bioimageanalysis #joboffer
EHU hiring 4-year PhD Position in Deep Learning for Bioimage Analysis in San Sebastián, Basque Country, Spain | LinkedIn
Posted 8:40:15 AM. The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country…See this and similar jobs on LinkedIn.
www.linkedin.com
October 3, 2025 at 8:44 AM
iarganda.bsky.social
Last but not least, we have @philippeandrey.bsky.social from @inrae-france.bsky.social with Practical session 7: "Statistical spatial analysis and modeling with BIP" 📊

We're learning about 💫BIP (Biological Image Processing)💫, the command-line 🖥️ #BioimageAnalysis solution from his lab.
Webcam view of the classroom of the EMBO course on "Advanced methods in bioimage analysis", during Practical session 7: "Statistical spatial analysis and modeling with BIP", by Philippe Andrey (Inrae, France). Zoom view of the screen of Philippe Andrey (Inrae, France) during Practical session 7: "Statistical spatial analysis and modeling with BIP", at of the EMBO course on "Advanced methods in bioimage analysis". The online participant cameras are shown on top, while a Linux terminal with BIP commands is shown on the bottom.
September 19, 2025 at 1:02 PM
iarganda.bsky.social
Thanks a lot, @ahklemm.bsky.social! It's tough to post on social networks while presenting 😜

I hope the students of the @embo.org course on Advanced methods in #BioimageAnalysis liked @biapyx.bsky.social 🤗
ahklemm.bsky.social Anna Klemm @ahklemm.bsky.social · Sep 19
@iarganda.bsky.social also on the stage by himself, giving an introduction to BiaPy @biapyx.bsky.social for streamlining deep-learning workflows. A tool tailored to be convenient to use by the full range of bioimage analysis experts.
September 19, 2025 at 10:04 AM
iarganda.bsky.social
First part of the session was dedicated to @biapyx.bsky.social, learning 🎓 about how to create #DeepLearning based workflows for #BioimageAnalysis tasks 🛠️

In particular, students got their hands on the notebook 📓 for 2D semantic segmentation:

colab.research.google.com/github/BiaPy...
Google Colab
colab.research.google.com
September 19, 2025 at 9:58 AM
iarganda.bsky.social
After an intense week of learning, coding and playing with advanced methods on #BioimageAnalysis, a well deserved BBQ 🔥 to recover our strength 💪 for tomorrow, the last day of the course 😢

Enjoy!
September 18, 2025 at 6:23 PM
iarganda.bsky.social
Without a pause, we (literally) run 🏃 into Lecture 5: "Visualization, annotation and data sharing of large images" with @webknossos.org by @normanrz.com

Discovering the super cool features of WEBKNOSSOS 😮 to deal with the increasing size of #BioimageAnalysis datasets.
Norman Rzepka from Scalable Minds (Germany) about to start his presentation in the EMBO course on Advanced methods in Bioimage Analysis (EMBL, September 2025). The first slide of his presentation reads "WEBKNOSSOS Visualization, annotation and data sharing of large images". Panoramic view of the classroom before Norman Rzepka from Scalable Minds (Germany) starts his presentation in the EMBO course on Advanced methods in Bioimage Analysis (EMBL, September 2025). The first slide of his presentation reads "WEBKNOSSOS Visualization, annotation and data sharing of large images". Norman Rzepka from Scalable Minds (Germany) talks in the EMBO course on Advanced methods in Bioimage Analysis (EMBL, September 2025). The slide of his presentation reads "3D imaging produces increasingly large volumes" and shows some examples of dataset sizes of milestone projects over the past few years. Norman Rzepka from Scalable Minds (Germany) is presenting in the EMBO course on Advanced methods in Bioimage Analysis (EMBL, September 2025). The current slide of his presentation reads "Render animations" and shows a 3D EM volume and its corresponding neuron segmentation.
September 18, 2025 at 8:32 AM
iarganda.bsky.social
UMAP clustering, points to regions, image features in #AI and #BioimageAnalysis... Where is Wählby/Wally? 😜
September 17, 2025 at 2:37 PM
haesleinhuepf.bsky.social
I gave two seminars at @embl.org Heidelberg these days: One about using LLMs via #biabob for #BioImageAnalysis and one about how LLMs impact BioImage #DataScience
Thanks EMBL for having me!
Materials #openaccess 🧑‍🏫🖥️🔓
zenodo.org/records/1705...
zenodo.org/records/1710...
scads.github.io/llm-bia-2025
September 16, 2025 at 7:02 PM