Want to catch up with the Imaging Platform next week at I2K (register now!) - you have SIX (6) chances to do it! All times Eastern:
Mon 11/17:
10am-12pm - Introduction to CellProfiler
1pm-2pm - Bilayers for Bioimage Analysts
2pm-3pm - Connecting CellProfiler to ilastik and Cellpose
(1/2)
Mon 11/17:
10am-12pm - Introduction to CellProfiler
1pm-2pm - Bilayers for Bioimage Analysts
2pm-3pm - Connecting CellProfiler to ilastik and Cellpose
(1/2)
Halfway to I2K 2025
From Images to Knowledge
www.i2kconference.org
November 11, 2025 at 3:27 PM
Want to catch up with the Imaging Platform next week at I2K (register now!) - you have SIX (6) chances to do it! All times Eastern:
Mon 11/17:
10am-12pm - Introduction to CellProfiler
1pm-2pm - Bilayers for Bioimage Analysts
2pm-3pm - Connecting CellProfiler to ilastik and Cellpose
(1/2)
Mon 11/17:
10am-12pm - Introduction to CellProfiler
1pm-2pm - Bilayers for Bioimage Analysts
2pm-3pm - Connecting CellProfiler to ilastik and Cellpose
(1/2)
Excited to share that I've joined EABIAS (East Asia Bioimage Analysts’ Society) following the recent GloBIAS Bioimage Analysis Conference 2025!
Happy to be part of this community. よろしくお願いします＆請多指教！
eabias.org/about/
Happy to be part of this community. よろしくお願いします＆請多指教！
eabias.org/about/
November 10, 2025 at 1:50 PM
Excited to share that I've joined EABIAS (East Asia Bioimage Analysts’ Society) following the recent GloBIAS Bioimage Analysis Conference 2025!
Happy to be part of this community. よろしくお願いします＆請多指教！
eabias.org/about/
Happy to be part of this community. よろしくお願いします＆請多指教！
eabias.org/about/
5 more days to apply for bioimage analyst position at the beautiful city of Helsinki
🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️
jobs.helsinki.fi/job/Helsinki...
#jobopening
jobs.helsinki.fi/job/Helsinki...
#jobopening
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
jobs.helsinki.fi
November 10, 2025 at 8:19 AM
5 more days to apply for bioimage analyst position at the beautiful city of Helsinki
📢 Enhance your bioimage analysis skills - 2-day hands-on napari workshop.
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
CBIAS napari workshop 2025
www.crick.ac.uk
November 7, 2025 at 10:49 AM
📢 Enhance your bioimage analysis skills - 2-day hands-on napari workshop.
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
📢 Enhance your bioimage analysis skills - 2-day hands-on napari workshop.
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
CBIAS napari workshop 2025
www.crick.ac.uk
November 7, 2025 at 10:49 AM
📢 Enhance your bioimage analysis skills - 2-day hands-on napari workshop.
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Janelia is hosting a course on DL for bioimage analysis www.janelia.org/you-janelia/...
Deep Learning for Microscopy Image Analysis
Topics The following will be covered extensively during lectures, exercises, and project work: Image denoising and restoration (fully supervised and self-supervised) Image translation (e.g.,
www.janelia.org
November 6, 2025 at 5:02 PM
Janelia is hosting a course on DL for bioimage analysis www.janelia.org/you-janelia/...
🔥 Innovation at #SPAOM2025!
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
November 5, 2025 at 6:13 PM
🔥 Innovation at #SPAOM2025!
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
I have been invited to speak at the UCL BioImage Interest Group meeting on Nov 14 - find the Zoom information on this link, open for anyone wanting to learn about AI-driven digital dissection tools (www.ucl.ac.uk/science-tech...)
UCL BioImage Interest Group
The UCL BIIG - BioImage Interest Group - aims to share knowledge, expertise and foster discussion and collaborations around the topics of bioimaging and bioimage analysis in an informal setting.
www.ucl.ac.uk
November 5, 2025 at 10:07 AM
I have been invited to speak at the UCL BioImage Interest Group meeting on Nov 14 - find the Zoom information on this link, open for anyone wanting to learn about AI-driven digital dissection tools (www.ucl.ac.uk/science-tech...)
By democratizing access to scientific resources, bia-binder aims to address inequalities and foster collaborative, exploratory research within the bioimage analysis community.
November 5, 2025 at 3:41 AM
By democratizing access to scientific resources, bia-binder aims to address inequalities and foster collaborative, exploratory research within the bioimage analysis community.
Developed using Helmsman and Helm, the service generates Jupyter Notebook environments hosted on EMBL-EBI's Embassy Cloud, enabling direct access to image data from the BioImage Archive, Image Data Resource, and BioStudies databases.
November 5, 2025 at 3:41 AM
Developed using Helmsman and Helm, the service generates Jupyter Notebook environments hosted on EMBL-EBI's Embassy Cloud, enabling direct access to image data from the BioImage Archive, Image Data Resource, and BioStudies databases.
bia-binder is an open-source, web-based platform that provides researchers with easy access to computational resources for bioimage analysis.
November 5, 2025 at 3:41 AM
bia-binder is an open-source, web-based platform that provides researchers with easy access to computational resources for bioimage analysis.
Unlock the power of bioimage analysis with bia-binder - a free, cloud-based coding environment that seamlessly integrates with leading image repositories, empowering researchers to push t...
🧵 Thread below
Full analysis: https://helixbrief.com/article/bd1203c7-e687-4857-a653-82437fdd6fab
🧵 Thread below
Full analysis: https://helixbrief.com/article/bd1203c7-e687-4857-a653-82437fdd6fab
November 5, 2025 at 3:41 AM
Unlock the power of bioimage analysis with bia-binder - a free, cloud-based coding environment that seamlessly integrates with leading image repositories, empowering researchers to push t...
🧵 Thread below
Full analysis: https://helixbrief.com/article/bd1203c7-e687-4857-a653-82437fdd6fab
🧵 Thread below
Full analysis: https://helixbrief.com/article/bd1203c7-e687-4857-a653-82437fdd6fab
Do you want to learn more about 25+ bioimage analysis tools, 100% for free? Sign up to attend Halfway to I2K today! tinyurl.com/Halfway-to-I...
Wishing you'd submitted a tool or workshop but missed the deadline? GREAT NEWS, we just extended one week! Submit by Friday - airtable.com/app2zpB8d82r...
Wishing you'd submitted a tool or workshop but missed the deadline? GREAT NEWS, we just extended one week! Submit by Friday - airtable.com/app2zpB8d82r...
#HappyFluorescenceFriday #microscopycommunity
Got an idea for an image analysis workshop? Share it at Halfway to I2K: Online Tutorials on Image Analysis (Nov 17–19, 2025), held with Zoom Events!
Submit by Oct 31: buff.ly/lMhK4vz
Website: buff.ly/QP36RZB
Register for the workshops: buff.ly/8nNAI18
Got an idea for an image analysis workshop? Share it at Halfway to I2K: Online Tutorials on Image Analysis (Nov 17–19, 2025), held with Zoom Events!
Submit by Oct 31: buff.ly/lMhK4vz
Website: buff.ly/QP36RZB
Register for the workshops: buff.ly/8nNAI18
Airtable | Everyone's app platform
Airtable is a low-code platform for building collaborative apps. Customize your workflow, collaborate, and achieve ambitious outcomes. Get started for free.
buff.ly
November 3, 2025 at 10:04 PM
Do you want to learn more about 25+ bioimage analysis tools, 100% for free? Sign up to attend Halfway to I2K today! tinyurl.com/Halfway-to-I...
Wishing you'd submitted a tool or workshop but missed the deadline? GREAT NEWS, we just extended one week! Submit by Friday - airtable.com/app2zpB8d82r...
Wishing you'd submitted a tool or workshop but missed the deadline? GREAT NEWS, we just extended one week! Submit by Friday - airtable.com/app2zpB8d82r...
🌏 PPBI at GloBIAS 2025 – Kobe, Japan!
@ppbioimaging.bsky.social is proud to join the @globias.bsky.social Bioimage Analysis Conference 2025 (Oct 26–31)!
A great chance to connect, learn, and share advances in bioimage analysis — and enjoy a glimpse of Japanese culture along the way. 🌸🔬
@ppbioimaging.bsky.social is proud to join the @globias.bsky.social Bioimage Analysis Conference 2025 (Oct 26–31)!
A great chance to connect, learn, and share advances in bioimage analysis — and enjoy a glimpse of Japanese culture along the way. 🌸🔬
October 30, 2025 at 4:34 PM
🌏 PPBI at GloBIAS 2025 – Kobe, Japan!
@ppbioimaging.bsky.social is proud to join the @globias.bsky.social Bioimage Analysis Conference 2025 (Oct 26–31)!
A great chance to connect, learn, and share advances in bioimage analysis — and enjoy a glimpse of Japanese culture along the way. 🌸🔬
@ppbioimaging.bsky.social is proud to join the @globias.bsky.social Bioimage Analysis Conference 2025 (Oct 26–31)!
A great chance to connect, learn, and share advances in bioimage analysis — and enjoy a glimpse of Japanese culture along the way. 🌸🔬
#GloBIAS2025 is ongoing with amazing speaker lineups at Kobe city
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
October 30, 2025 at 2:12 AM
#GloBIAS2025 is ongoing with amazing speaker lineups at Kobe city
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Their work advances technical applications and bioimage data management and analysis in FLIM microscopy for life science research.
"A fluorescence lifetime separation approach for FLIM live-cell imaging" by Cornelia Wetzker et al is free-to-view here: doi.org/10.1111/jmi....
"A fluorescence lifetime separation approach for FLIM live-cell imaging" by Cornelia Wetzker et al is free-to-view here: doi.org/10.1111/jmi....
A fluorescence lifetime separation approach for FLIM live‐cell imaging
Fluorescence lifetime imaging microscopy abbreviated as FLIM is a specialised application of microscopy in which the duration from the uptake or absorption of a photon to the release or emission by a...
doi.org
October 29, 2025 at 1:41 PM
Their work advances technical applications and bioimage data management and analysis in FLIM microscopy for life science research.
"A fluorescence lifetime separation approach for FLIM live-cell imaging" by Cornelia Wetzker et al is free-to-view here: doi.org/10.1111/jmi....
"A fluorescence lifetime separation approach for FLIM live-cell imaging" by Cornelia Wetzker et al is free-to-view here: doi.org/10.1111/jmi....
Tomocube is exhibiting at the 𝗚𝗹𝗼𝗕𝗜𝗔𝗦 𝗕𝗶𝗼𝗶𝗺𝗮𝗴𝗲 𝗔𝗻𝗮𝗹𝘆𝘀𝗶𝘀 𝗖𝗼𝗻𝗳𝗲𝗿𝗲𝗻𝗰𝗲 𝟮𝟬𝟮𝟱 in 𝗞𝗼𝗯𝗲, 𝗝𝗮𝗽𝗮𝗻, together with our distributor Shinkouseiki!
We’re here all week — stop by to connect and explore Tomocube’s innovations.
We’re here all week — stop by to connect and explore Tomocube’s innovations.
October 29, 2025 at 7:17 AM
Tomocube is exhibiting at the 𝗚𝗹𝗼𝗕𝗜𝗔𝗦 𝗕𝗶𝗼𝗶𝗺𝗮𝗴𝗲 𝗔𝗻𝗮𝗹𝘆𝘀𝗶𝘀 𝗖𝗼𝗻𝗳𝗲𝗿𝗲𝗻𝗰𝗲 𝟮𝟬𝟮𝟱 in 𝗞𝗼𝗯𝗲, 𝗝𝗮𝗽𝗮𝗻, together with our distributor Shinkouseiki!
We’re here all week — stop by to connect and explore Tomocube’s innovations.
We’re here all week — stop by to connect and explore Tomocube’s innovations.
🔬 Registration is open for the Crick BioImage Analysis Symposium !
📅 Nov 24–25 | London
This crucial meeting is for researchers who use advanced image analysis to make discoveries in biomedical science.
👉 https://f.mtr.cool/ibzchstjfs
@crick.ac.uk
📅 Nov 24–25 | London
This crucial meeting is for researchers who use advanced image analysis to make discoveries in biomedical science.
👉 https://f.mtr.cool/ibzchstjfs
@crick.ac.uk
October 28, 2025 at 11:29 AM
🔬 Registration is open for the Crick BioImage Analysis Symposium !
📅 Nov 24–25 | London
This crucial meeting is for researchers who use advanced image analysis to make discoveries in biomedical science.
👉 https://f.mtr.cool/ibzchstjfs
@crick.ac.uk
📅 Nov 24–25 | London
This crucial meeting is for researchers who use advanced image analysis to make discoveries in biomedical science.
👉 https://f.mtr.cool/ibzchstjfs
@crick.ac.uk
Going to Kobe for GloBIAS Bioimage Analysis Conference 2025! A bit at a loss what to wear, as we're already using the heater here in Muroran, Hokkaido.🥶
#GloBIAS
#GloBIAS
October 27, 2025 at 1:40 PM
Going to Kobe for GloBIAS Bioimage Analysis Conference 2025! A bit at a loss what to wear, as we're already using the heater here in Muroran, Hokkaido.🥶
#GloBIAS
#GloBIAS
scikit-image is widely used across bioimage analysis (incl. under the hood in CellProfiler), but with large 3D volumes and long time-lapse datasets, CPU execution often becomes the bottleneck.
2/6
2/6
October 23, 2025 at 6:01 PM
scikit-image is widely used across bioimage analysis (incl. under the hood in CellProfiler), but with large 3D volumes and long time-lapse datasets, CPU execution often becomes the bottleneck.
2/6
2/6
💡Just presented our new paper at the @iccv.bsky.social BioImage Computing workshop: cubic: CUDA-accelerated 3D Bioimage Computing. We introduce a simple way to add GPU acceleration to scikit-image–based bioimage processing pipelines by swapping import statements. 🧵
1/6 #iccv2025
1/6 #iccv2025
October 23, 2025 at 6:01 PM
💡Just presented our new paper at the @iccv.bsky.social BioImage Computing workshop: cubic: CUDA-accelerated 3D Bioimage Computing. We introduce a simple way to add GPU acceleration to scikit-image–based bioimage processing pipelines by swapping import statements. 🧵
1/6 #iccv2025
1/6 #iccv2025
Yay for more accessible tools, Ricardo, congrats on bringing it all together! Hope to see the models in the BioImage Model Zoo soon ;)
October 22, 2025 at 2:17 PM
Yay for more accessible tools, Ricardo, congrats on bringing it all together! Hope to see the models in the BioImage Model Zoo soon ;)
With @guijacquemet.bsky.social @seamusholden.bsky.social and Cécile Morlot among the rockstar speakers. 8 hands on workshops covering topics including Expansion Microscopy, 3D printing for microscopy and AI in bioimage analysis. It'll be fun!
October 21, 2025 at 2:28 PM
With @guijacquemet.bsky.social @seamusholden.bsky.social and Cécile Morlot among the rockstar speakers. 8 hands on workshops covering topics including Expansion Microscopy, 3D printing for microscopy and AI in bioimage analysis. It'll be fun!
🇬🇧 Are you based in the UK?
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑🤝🧑 Want to spend time supporting external users?
The UK BioImage Analysis Network (UK-BIAS) might be for you.
Apply below before November 5th.
forms.gle/XhP15nxg2ZgW...
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑🤝🧑 Want to spend time supporting external users?
The UK BioImage Analysis Network (UK-BIAS) might be for you.
Apply below before November 5th.
forms.gle/XhP15nxg2ZgW...
Expression of Interest: UK Bioimage Analysis Network (UK-BIAS)
The UK node of Euro-BioImaging, a major European initiative providing open access to biological and biomedical imaging technologies, currently offers assistance with Biological Image Data Analysis. Ho...
forms.gle
October 21, 2025 at 8:35 AM
🇬🇧 Are you based in the UK?
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑🤝🧑 Want to spend time supporting external users?
The UK BioImage Analysis Network (UK-BIAS) might be for you.
Apply below before November 5th.
forms.gle/XhP15nxg2ZgW...
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑🤝🧑 Want to spend time supporting external users?
The UK BioImage Analysis Network (UK-BIAS) might be for you.
Apply below before November 5th.
forms.gle/XhP15nxg2ZgW...