🧬 Estimating genetic relatedness from low-coverage data just got easier.
Meet BREADR, an #RStats package for Bayesian kinship estimation using mismatch rates.
Ideal for population genetics & ancient DNA work
Meet BREADR, an #RStats package for Bayesian kinship estimation using mismatch rates.
Ideal for population genetics & ancient DNA work
BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data
Rohrlach et al., (2025). BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data. Journal of Open Source Software, 10(108), 7916, https://doi.org/10.21105/joss.07916
joss.theoj.org
May 19, 2025 at 8:31 AM
🧬 Estimating genetic relatedness from low-coverage data just got easier.
Meet BREADR, an #RStats package for Bayesian kinship estimation using mismatch rates.
Ideal for population genetics & ancient DNA work
Meet BREADR, an #RStats package for Bayesian kinship estimation using mismatch rates.
Ideal for population genetics & ancient DNA work
Long after we first had the idea, BREADR has just been published in the Journal of Open Source Software (@joss-openjournals.bsky.social).
A huge thanks to Jono Tuke, Divy Popli and Wolfgang Haak for the support.
#ancientDNA #genetickinship
doi.org/10.21105/jos...
A huge thanks to Jono Tuke, Divy Popli and Wolfgang Haak for the support.
#ancientDNA #genetickinship
doi.org/10.21105/jos...
BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data
Rohrlach et al., (2025). BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data. Journal of Open Source Software, 10(108), 7916, https://doi.org/10.211...
doi.org
April 28, 2025 at 9:23 AM
Long after we first had the idea, BREADR has just been published in the Journal of Open Source Software (@joss-openjournals.bsky.social).
A huge thanks to Jono Tuke, Divy Popli and Wolfgang Haak for the support.
#ancientDNA #genetickinship
doi.org/10.21105/jos...
A huge thanks to Jono Tuke, Divy Popli and Wolfgang Haak for the support.
#ancientDNA #genetickinship
doi.org/10.21105/jos...
Just published in JOSS: 'BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data' https://doi.org/10.21105/joss.07916
April 28, 2025 at 9:11 AM
Just published in JOSS: 'BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data' https://doi.org/10.21105/joss.07916
Updates on CRAN: BREADR (1.0.3), diceplot (0.1.7), ecolottery (1.0.1), FlexReg (1.3.1), gtsummary (2.2.0), lpSolveAPI (5.5.2.0-17.14), maq (0.6.0), neojags (0.1.6)
April 14, 2025 at 1:36 PM
Updates on CRAN: BREADR (1.0.3), diceplot (0.1.7), ecolottery (1.0.1), FlexReg (1.3.1), gtsummary (2.2.0), lpSolveAPI (5.5.2.0-17.14), maq (0.6.0), neojags (0.1.6)
Well, I had a blast! Thanks to ACAD for hosting me. And cheers to @dnatimetravel.bsky.social for the help and the morning tea.
#BREADR #donutsforanhonestdayswork
#BREADR #donutsforanhonestdayswork
February 25, 2025 at 7:29 AM
Well, I had a blast! Thanks to ACAD for hosting me. And cheers to @dnatimetravel.bsky.social for the help and the morning tea.
#BREADR #donutsforanhonestdayswork
#BREADR #donutsforanhonestdayswork
I'm giving a workshop this week on using our (low-coverage) genetic kinship estimator, BREADR, and was thinking about format. Out of interest, do you prefer:
1. An entry-level explanation of the theory.
2. Interactive demo with example data.
3. Help working on your data.
4. All of the above?
1. An entry-level explanation of the theory.
2. Interactive demo with example data.
3. Help working on your data.
4. All of the above?
February 17, 2025 at 11:04 PM
I'm giving a workshop this week on using our (low-coverage) genetic kinship estimator, BREADR, and was thinking about format. Out of interest, do you prefer:
1. An entry-level explanation of the theory.
2. Interactive demo with example data.
3. Help working on your data.
4. All of the above?
1. An entry-level explanation of the theory.
2. Interactive demo with example data.
3. Help working on your data.
4. All of the above?
Sign up for my new app BREADR, I will buy all of the bread and then for $20 a month I will send you two loaves of bread a week.
December 10, 2024 at 11:21 PM
Sign up for my new app BREADR, I will buy all of the bread and then for $20 a month I will send you two loaves of bread a week.
Updates on CRAN: aggTrees (2.1.0), BREADR (1.0.2), geepack (1.3.11.1), jtdm (0.1-3), LorenzRegression (2.0.0), MiscMetabar (0.9.3), OBIC (3.0.3), psvmSDR (1.0.2), TrialEmulation (0.0.3.9), wINEQ (1.2.1)
September 9, 2024 at 1:24 PM
Updates on CRAN: aggTrees (2.1.0), BREADR (1.0.2), geepack (1.3.11.1), jtdm (0.1-3), LorenzRegression (2.0.0), MiscMetabar (0.9.3), OBIC (3.0.3), psvmSDR (1.0.2), TrialEmulation (0.0.3.9), wINEQ (1.2.1)