Ziheng Yang Lab
@zihengyang.bsky.social
Ziheng Yang's Lab at UCL (CLOE) | Computational Molecular Evolution
Website: http://abacus.gene.ucl.ac.uk/
BPP GitHub: https://github.com/bpp/
PAML GitHub: https://github.com/abacus-gene/paml
PAML discussion group: https://groups.google.com/g/pamlsoftware
Website: http://abacus.gene.ucl.ac.uk/
BPP GitHub: https://github.com/bpp/
PAML GitHub: https://github.com/abacus-gene/paml
PAML discussion group: https://groups.google.com/g/pamlsoftware
And some more pictures from the workshop! (2/2) Thanks to lab members @sabifo4.bsky.social , Tomas Flouri, and Yuttapong Thawornwattana!
November 11, 2025 at 6:09 AM
And some more pictures from the workshop! (2/2) Thanks to lab members @sabifo4.bsky.social , Tomas Flouri, and Yuttapong Thawornwattana!
Reposted by Ziheng Yang Lab
First up we have Xiyun Jiao and @zihengyang.bsky.social showing the importance of moving beyond model fit testing and embracing sensitivity testing in phylogenetics.
In other words, question your data assumptions and test for model robustness not just adequacy.
(2/n)
doi.org/10.1093/evol...
In other words, question your data assumptions and test for model robustness not just adequacy.
(2/n)
doi.org/10.1093/evol...
On measures of influence and discordance in phylogenomic analyses
Abstract. As models are approximate descriptions of real biological processes, and data are collected often with errors and contamination, sensitivity or r
doi.org
September 29, 2025 at 4:00 PM
First up we have Xiyun Jiao and @zihengyang.bsky.social showing the importance of moving beyond model fit testing and embracing sensitivity testing in phylogenetics.
In other words, question your data assumptions and test for model robustness not just adequacy.
(2/n)
doi.org/10.1093/evol...
In other words, question your data assumptions and test for model robustness not just adequacy.
(2/n)
doi.org/10.1093/evol...
And... Some more pictures from the social activities! There was even time to enjoy the beach during lunch breaks and group singing at an evening karaoke session! 🎤🏖️
June 6, 2025 at 2:31 PM
And... Some more pictures from the social activities! There was even time to enjoy the beach during lunch breaks and group singing at an evening karaoke session! 🎤🏖️
And some more pictures! Thanks to lab members @sabifo4.bsky.social , Tomas, and Yuttapong too! (2/2)
March 6, 2025 at 9:41 AM
And some more pictures! Thanks to lab members @sabifo4.bsky.social , Tomas, and Yuttapong too! (2/2)
Last, but not least, thanks to @sabifo4.bsky.social for working on the PAML Wiki and for constantly supporting PAML users! 🙌 💫 Also, thanks to Janet Young and @sishuowang.bsky.social for their contributions to the PAML discussion group, which have been valuable for PAML users!🙌 (5/5)
November 29, 2024 at 2:42 PM
Last, but not least, thanks to @sabifo4.bsky.social for working on the PAML Wiki and for constantly supporting PAML users! 🙌 💫 Also, thanks to Janet Young and @sishuowang.bsky.social for their contributions to the PAML discussion group, which have been valuable for PAML users!🙌 (5/5)
If you experience technical issues when running PAML programs (e.g., programs abort, bugs, etc.), please raise an issue on the PAML GitHub repository. Please post all other questions on the PAML discussion group so that other PAML users can have their say and benefit from the discussion! 🌐 💬(4/n)
November 29, 2024 at 2:33 PM
If you experience technical issues when running PAML programs (e.g., programs abort, bugs, etc.), please raise an issue on the PAML GitHub repository. Please post all other questions on the PAML discussion group so that other PAML users can have their say and benefit from the discussion! 🌐 💬(4/n)
To post a message on the PAML discussion group, you must be part of the group. When requesting to join, please briefly introduce yourself and explain why you would like to join. This is a safety measure we have recently implemented to avoid bots disturbing the PAML community with SPAM. (3/n)
November 29, 2024 at 2:29 PM
To post a message on the PAML discussion group, you must be part of the group. When requesting to join, please briefly introduce yourself and explain why you would like to join. This is a safety measure we have recently implemented to avoid bots disturbing the PAML community with SPAM. (3/n)