Zac Swider
@zacswider.bsky.social
Biologist turned programmer. Working on data pipelines for high throughput imaging. Mostly posting about Python and Rust but no guantees :)
mergechannels 0.5.0 adds support for passing colormap objects from cmap (github.com/pyapp-kit/cmap) or matplotlib in addition to built-in colormaps from FIJI, myself, @christlet.bsky.social and @jamesdmanton.bsky.social
pip install mergechannels or build from github.com/zacswider/me...
pip install mergechannels or build from github.com/zacswider/me...
June 5, 2025 at 3:57 AM
mergechannels 0.5.0 adds support for passing colormap objects from cmap (github.com/pyapp-kit/cmap) or matplotlib in addition to built-in colormaps from FIJI, myself, @christlet.bsky.social and @jamesdmanton.bsky.social
pip install mergechannels or build from github.com/zacswider/me...
pip install mergechannels or build from github.com/zacswider/me...
There has to be a better way to open .lut files right??
June 4, 2025 at 7:39 PM
There has to be a better way to open .lut files right??
Just pushed v0.3.0 which builds in the lovely suite of LUTs created by @jamesdmanton.bsky.social also installable directly into FIJI at sites.imagej.net/JDM_LUTs/luts/
May 19, 2025 at 5:18 AM
Just pushed v0.3.0 which builds in the lovely suite of LUTs created by @jamesdmanton.bsky.social also installable directly into FIJI at sites.imagej.net/JDM_LUTs/luts/
Also adjust low/high points while color mapping 🎉
May 18, 2025 at 8:58 PM
Also adjust low/high points while color mapping 🎉
Building soon - adding support for 3D and u16 images to github.com/zacswider/me...
May 18, 2025 at 5:46 AM
Building soon - adding support for 3D and u16 images to github.com/zacswider/me...
If you’re like me and want to use/blend FIJI lookup tables from Python you can now install mergechannels with pip or build from source: github.com/zacswider/me...
This is a very *minimal* working implementation but there’s more to come :)
This is a very *minimal* working implementation but there’s more to come :)
April 19, 2025 at 4:01 AM
If you’re like me and want to use/blend FIJI lookup tables from Python you can now install mergechannels with pip or build from source: github.com/zacswider/me...
This is a very *minimal* working implementation but there’s more to come :)
This is a very *minimal* working implementation but there’s more to come :)
Amaziiiiiing I love matplotlib 🥰
April 11, 2025 at 4:55 PM
Amaziiiiiing I love matplotlib 🥰
Wow blending brightfield and fluorescence is always such a pain
April 11, 2025 at 2:50 AM
Wow blending brightfield and fluorescence is always such a pain
Reason #42 to use a split keeb - multiplexing side projects
April 10, 2025 at 4:09 AM
Reason #42 to use a split keeb - multiplexing side projects
It’s still a little half baked, but hopefully very soon
April 10, 2025 at 2:45 AM
It’s still a little half baked, but hopefully very soon
Added next gen color flavors from @christlet.bsky.social and native blending for inverted cmaps github.com/cleterrier/C...
April 10, 2025 at 1:22 AM
Added next gen color flavors from @christlet.bsky.social and native blending for inverted cmaps github.com/cleterrier/C...
Baby steps! Autocompletion for built-in colormap names 👀
April 2, 2025 at 12:59 AM
Baby steps! Autocompletion for built-in colormap names 👀
Working on bringing FIJI lookup tables to Python
March 9, 2025 at 5:59 AM
Working on bringing FIJI lookup tables to Python
Advent of code day 4 🦀
I’m not good at working with strings in Rust, performance is degrading quickly!
I’m not good at working with strings in Rust, performance is degrading quickly!
December 4, 2024 at 11:35 PM
Advent of code day 4 🦀
I’m not good at working with strings in Rust, performance is degrading quickly!
I’m not good at working with strings in Rust, performance is degrading quickly!
Advent of code day 3 🐍
December 3, 2024 at 8:22 PM
Advent of code day 3 🐍
Me, tonight, reading my code.
December 3, 2024 at 5:07 AM
Me, tonight, reading my code.
Advent of code day 2 🦀
December 3, 2024 at 4:39 AM
Advent of code day 2 🦀
Advent of code day 1 🦀
December 2, 2024 at 2:32 AM
Advent of code day 1 🦀
8th time is the charm…
November 27, 2024 at 6:00 PM
8th time is the charm…
Playing with moondream github.com/vikhyat/moon...
November 27, 2024 at 5:58 PM
Playing with moondream github.com/vikhyat/moon...
Trying instanseg next
November 26, 2024 at 11:00 PM
Trying instanseg next