Zach Cohen
zachcohen1.bsky.social
Zach Cohen
@zachcohen1.bsky.social
Theoretical/computational neuroscience, PhD student @harvard.edu, @kempnerinstitute.bsky.social graduate fellow, formerly princeton cs
tl;dr: populations encoding 2- and 3-D quantities need shape and size heterogeneity to increase encoded information. We show how one can measure these heterogeneities using Bayesian inference, which offers a principled way of handling noisy, incomplete neural data. [n=16/n]
July 31, 2025 at 6:03 PM
More broadly, this framework produces a bunch of testable predictions beyond place fields. And, we propose a principled method for testing these predictions in other populations. [15/n]
July 31, 2025 at 6:03 PM
With our theory, we can also quantify just how much more information about spatial position these populations encode than if they all shared the same size/shape. [14/n]
July 31, 2025 at 6:03 PM
With our new method in hand, we turned back to rodent place fields. As the theory predicts, place fields appear to exhibit high degrees of size and shape heterogeneity! (ticks in d,e are sessions) [13/n]
July 31, 2025 at 6:03 PM
We show that doing this overcomes the issues we identified with tuning measurement based on the STA. With it, we can identify shape and size heterogeneity in simulated populations far more accurately. Our method is also less biased by the occupancy pattern of the animal. [12/n]
July 31, 2025 at 6:03 PM
We propose a new Bayesian approach. We use it to explicitly quantify how uncertain we are about a field’s tuning based on how limited data is. Then we use this uncertainty to weight our estimates of field properties when measuring the degrees of shape and size heterogeneity. [11/n]
July 31, 2025 at 6:03 PM
In the context of place cells, this refers to the rat not traversing the environment perfectly uniformly. These biases can skew the measurements of shape and size heterogeneity. So, we figured that a different way of measuring receptive fields was necessary to test our theory.[10/n]
July 31, 2025 at 6:03 PM
But, we ran into some roadblocks. Many existing methods for measuring tuning curves rely on the STA. We show in our work that the STA is sensitive to biases arising from limited or incomplete sampling of the environment. [9/n]
July 31, 2025 at 6:03 PM
While size heterogeneity in place fields has been documented, shape heterogeneity has been relatively understudied. So, we followed the predictions of our framework and tried to measure the degree of place field size and shape heterogeneity. [8/n]
July 31, 2025 at 6:03 PM
So, we introduced shape heterogeneity. When receptive fields vary in size and shape, populations can better encode 2- and 3-D quantities. But this property reverses for higher-dimensional stimuli. Size heterogeneity remains useful, while shape heterogeneity becomes harmful. [7/n]
July 31, 2025 at 6:03 PM
We dive into why this is in the manuscript, but I’ll spare the details here. This finding is fairly curious, because we know that place fields in rodents (encoding 2D spatial location) and bats (encoding 3D spatial location) have variably sized RFs… [6/n]
July 31, 2025 at 6:03 PM
Let’s start with size heterogeneity, where we find dimensionality-dependence: Heterogeneously sized RFs increase info of one dimensional stimuli (head direction, eg). And >3-D stimuli. Strikingly, size heterogeneity isn’t helpful for encoding 2- or 3-D variables. [5/n]
July 31, 2025 at 6:03 PM
…until now! We derived the amount of information encoded about a stimulus in spiking activity as a function of the degree of the population’s RF heterogeneity. To make the theory general, we derived this relationship for arbitrary stimulus dimensionalities. [4/n]
July 31, 2025 at 6:03 PM
Why would the brain prefer such variability? Is there a general coding benefit associated with heterogeneously sized receptive fields? This question has been asked in specific populations and under specific conditions, but a theory that unifies these accounts is lacking… [3/n]
July 31, 2025 at 6:03 PM
Populations across the brain have differently sized and shaped receptive fields. A striking example of this is hippocampal CA1 place cells, whose receptive fields can be mere centimeters across or as large as a few meters in size (fig from Rich et al., 2014) . [2/n]
July 31, 2025 at 6:03 PM