Ryo Yokoyama
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yokoyama-ryo.bsky.social
Ryo Yokoyama
@yokoyama-ryo.bsky.social
University of Missouri / Photosynthesis, chloroplast, metabolomics / Kyoto🇯🇵⏩Madison, WI🇺🇸⏩MPI-Potsdam🇩🇪⏩Columbia, MO🇺🇸 / X(Twitter) @yokoyama_ryo

https://sites.google.com/view/ry-plant
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Truly honored to receive this year’s TPJ-PSNA Early Career Award at the PSNA annual meeting in Toronto! Huge thanks to all the mentors, colleagues, and collaborators who have supported me along the way.
Phytoene synthase modulates seed longevity via β-carotene derived metabolites academic.oup.com/plphys/artic... @plantphys.bsky.social
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November 18, 2025 at 3:13 AM
Far-red light induces ultrastructural reorganization of chloroplasts in Marchantia polymorpha to compensate for reduced photosynthetic efficiency link.springer.com/article/10.1...
Far-red light induces ultrastructural reorganization of chloroplasts in Marchantia polymorpha to compensate for reduced photosynthetic efficiency - Planta
Main conclusion Far-red light is stressful to Marchantia polymorpha and reduces the efficiency of photosystem II. In response, Marchantia reorganizes the chloroplast ultrastructure, forming Rubisco co...
link.springer.com
November 17, 2025 at 3:56 PM
Phenolic Compounds and Derivatives in Ruminant Meat and Milk: A Systematic Review | Journal of Agricultural and Food Chemistry pubs.acs.org/doi/10.1021/...
Phenolic Compounds and Derivatives in Ruminant Meat and Milk: A Systematic Review
This review synthesizes evidence on phenolic concentrations and diversity in ruminant meat and milk, considering animal species, management, forage, seasonality, and analytical methods. From 39 studie...
pubs.acs.org
November 17, 2025 at 2:43 PM
Illuminating the Subcellular Maze: Fluorescence-Activated Organelle Sorting in Plant Sciences academic.oup.com/jxb/article/... @jxbotany.bsky.social
Illuminating the Subcellular Maze: Fluorescence-Activated Organelle Sorting in Plant Sciences
Abstract. The isolation of organelles is critical for gaining a deeper understanding of their functions in intracellular processes, not only at the cellula
academic.oup.com
November 17, 2025 at 2:37 PM
A pgrl1ab suppressor screen uncovers mutations in the metal-binding site of PGRL2 and the copper-transporting ATPase PAA1 academic.oup.com/plphys/artic... @plantphys.bsky.social
A pgrl1ab suppressor screen uncovers mutations in the metal-binding site of PGRL2 and the copper-transporting ATPase PAA1
A suppressor screen in proton gradient regulation-like1ab plants reveals factors that regulate PROTON GRADIENT REGULATION5 function and stability through s
academic.oup.com
November 17, 2025 at 2:35 PM
Reposted by Ryo Yokoyama
Happy to share our latest article in @newphyt.bsky.social. We look at the impacts of high atmospheric CO2, heatwaves, nitrogen fertiliser and drought on #wheat stomatal performance, photosynthesis, water usage and yield. @drhollycroft.bsky.social nph.onlinelibrary.wiley.com/doi/full/10.11…
November 17, 2025 at 11:40 AM
Quinol C-methyltransferases from extant species of early cyanobacterial lineages shed light on the emergence of plastoquinone in oxygenic phototrophs link.springer.com/article/10.1...
Quinol C-methyltransferases from extant species of early cyanobacterial lineages shed light on the emergence of plastoquinone in oxygenic phototrophs - Photosynthesis Research
Cyanobacteria and plastids harbor two prenylated quinones that serve as vital photosynthetic cofactors. One is a naphthoquinone (phylloquinone or menaquinone depending on the species), the naphthalene...
link.springer.com
November 14, 2025 at 5:54 PM
From Plants to Microbes: Harnessing Enzyme Promiscuity for Natural Product Synthesis | Journal of Agricultural and Food Chemistry pubs.acs.org/doi/full/10....
From Plants to Microbes: Harnessing Enzyme Promiscuity for Natural Product Synthesis
Enzyme promiscuity has increasingly garnered significant attention in recent years, with a growing number of enzymes exhibiting this trait being progressively characterized. In plant systems, enzyme promiscuity critically underpins adaptive evolution, where evolutionary pressures drive environmental acclimatization and functional innovation. Conversely, in synthetic biology, this property exhibits a dual-edged nature: broad substrate promiscuity facilitates heterologous biosynthesis of natural products while enabling exploration of novel enzymatic functions and new natural product scaffolds. However, concomitant challenges─including byproduct accumulation, diminished target product purity, and reduced catalytic efficiency stemming from compromised specificity─impede industrial-scale natural product synthesis. Despite these limitations, this inherent enzymatic feature has driven synergistic advancements across biocatalysis, biosynthesis, and protein engineering. This review systematically dissects the manifestations of enzyme promiscuity in microbial natural product biosynthesis and critically evaluates contemporary strategies for alleviating enzyme promiscuity. Ultimately, it seeks to advance mechanistic understanding of enzyme promiscuity and establish a foundational framework for developing high-efficiency biosynthetic platforms.
pubs.acs.org
November 14, 2025 at 2:54 PM
Redox regulation of membrane-associated processes mediated by chloroplastic thioredoxins www.sciencedirect.com/science/arti...
Redox regulation of membrane-associated processes mediated by chloroplastic thioredoxins
Plant chloroplasts are complex organelles that house a plethora of redox-controlled metabolic processes. However, our understanding of membrane-level …
www.sciencedirect.com
November 14, 2025 at 2:44 PM
Redistribution of excitation energy between two photosystems during light-shade adaptation in marine diatoms: State conversion of light-harvesting complexes www.biorxiv.org/content/10.1...
www.biorxiv.org
November 14, 2025 at 2:40 PM
Systemic and local regulation of root growth by vascular trehalose 6-phosphate is correlated with re-allocation of primary metabolites between shoots and roots www.biorxiv.org/content/10.1...
www.biorxiv.org
November 14, 2025 at 2:40 PM
Phenolamides: metabolic architects of plant adaptation: Trends in Plant Science www.cell.com/trends/plant...
Phenolamides: metabolic architects of plant adaptation
Phenolamides are specialized plant metabolites with important roles in plant disease resistance and stress tolerance. They serve as biomarkers and effectors of oxidative stress. Moreover, they enhance...
www.cell.com
November 14, 2025 at 1:36 AM
Curvature Thylakoid1‐like protein CurT mediates thylakoid membrane architecture in Synechococcus elongatus PCC 7942 onlinelibrary.wiley.com/doi/10.1002/...
Curvature Thylakoid1‐like protein CurT mediates thylakoid membrane architecture in Synechococcus elongatus PCC 7942
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onlinelibrary.wiley.com
November 13, 2025 at 7:33 PM
Lipid droplet on the move: remodeling, trafficking and interaction with other organelles academic.oup.com/jxb/article-... @jxbotany.bsky.social
Lipid droplet on the move: remodeling, trafficking and interaction with other organelles
Abstract. Lipid droplets (LDs) are subcellular organelles consisting of a neutral lipid core surrounded by a monolayered membrane and a protein coat. Recen
academic.oup.com
November 13, 2025 at 2:38 PM
Structure and encapsulation of carbonic anhydrase within the α-carboxysome | PNAS www.pnas.org/doi/10.1073/... @pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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November 13, 2025 at 2:37 PM
Mapping light-harvesting and photoprotection responses in the Photosystem II antenna system of higher plants academic.oup.com/plphys/artic... @plantphys.bsky.social
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November 13, 2025 at 2:35 PM
Disequilibrium between chloroplast proton motive force and ATP levels in Arabidopsis www.biorxiv.org/content/10.1...
Disequilibrium between chloroplast proton motive force and ATP levels in Arabidopsis
Current dogma holds that CO2 fixation by photosynthesis requires additional ATP production via PGR5-dependent cyclic electron transfer (PGR5-CET) to augment the NADPH and ATP produced by linear electr...
www.biorxiv.org
November 12, 2025 at 3:24 PM
Introduction of regioselective bacterial heme oxygenases into Arabidopsis hy1-1 supports the retrograde heme signaling hypothesis www.biorxiv.org/content/10.1...
Introduction of regioselective bacterial heme oxygenases into Arabidopsis hy1-1 supports the retrograde heme signaling hypothesis
In plant cells, heme is synthesized in the plastid and metabolized to phytochromobilin (PΦB) in two enzymatic steps: heme oxygenase (HO) and PΦB synthase (HY2). In Arabidopsis thaliana , HO1/HY1/GUN2 ...
www.biorxiv.org
November 11, 2025 at 5:30 PM
The EGY1-SGR1 module controls chloroplast development and senescence by modulating photosynthetic functions www.biorxiv.org/content/10.1...
The EGY1-SGR1 module controls chloroplast development and senescence by modulating photosynthetic functions
The chloroplast plays essential roles not only in production of biochemical energy and metabolism, but also in plant development, including senescence. We describe a mutant with an unusual progression...
www.biorxiv.org
November 11, 2025 at 5:30 PM
High‐resolution dual‐polarity molecular imaging platform unraveling spatial metabolic heterogeneity in multiple plant tissues onlinelibrary.wiley.com/doi/full/10.... @jipb.bsky.social
High‐resolution dual‐polarity molecular imaging platform unraveling spatial metabolic heterogeneity in multiple plant tissues
The AMG-LDI-MSI platform uses gold nanoparticle—loaded MoS2 and doped graphene oxide flexible film substrate combined with laser desorption/ionization for rapid and accurate visualization of a wide r...
onlinelibrary.wiley.com
November 11, 2025 at 2:48 PM