Yana Bromberg
@yanabromberg.bsky.social
Bioinformatics geek. Prof @Emory, CS and Biology. Learning protein-ish and deciphering the DNA blueprint of life
Reposted by Yana Bromberg
June 11, 2025 at 8:08 AM
Reposted by Yana Bromberg
Yana Bromberg at the Woodstock Night Science conference #TCTEAC @yanabromberg.bsky.social
June 11, 2025 at 12:42 PM
Yana Bromberg at the Woodstock Night Science conference #TCTEAC @yanabromberg.bsky.social
Are you using AI models on protein or DNA sequences? Did you maybe forget that their embeddings come with no obvious measure of reliability?
Imagine how sequence analysis would suffer if source sequences were sometimes subtly randomized. This is exactly what happens if we use low-quality embeddings.
Imagine how sequence analysis would suffer if source sequences were sometimes subtly randomized. This is exactly what happens if we use low-quality embeddings.
May 12, 2025 at 2:29 PM
Are you using AI models on protein or DNA sequences? Did you maybe forget that their embeddings come with no obvious measure of reliability?
Imagine how sequence analysis would suffer if source sequences were sometimes subtly randomized. This is exactly what happens if we use low-quality embeddings.
Imagine how sequence analysis would suffer if source sequences were sometimes subtly randomized. This is exactly what happens if we use low-quality embeddings.
Reposted by Yana Bromberg
Shout out to Hot Tub concocted papers at #psb2025! Our Ten Simple Rules for Scientific Comics arose from a hot tub hypothesis with @yanabromberg.bsky.social - "Hey, I bet we could write a paper on scientific comics!" @pacsym.bio
Do you have any 'hot tub' papers?
journals.plos.org/ploscompbiol...
Do you have any 'hot tub' papers?
journals.plos.org/ploscompbiol...
January 6, 2025 at 7:57 PM
Shout out to Hot Tub concocted papers at #psb2025! Our Ten Simple Rules for Scientific Comics arose from a hot tub hypothesis with @yanabromberg.bsky.social - "Hey, I bet we could write a paper on scientific comics!" @pacsym.bio
Do you have any 'hot tub' papers?
journals.plos.org/ploscompbiol...
Do you have any 'hot tub' papers?
journals.plos.org/ploscompbiol...
This and 'mirror' cells... and we are done
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
A synthetic protein-level neural network in mammalian cells
Artificial neural networks provide a powerful paradigm for nonbiological information processing. To understand whether similar principles could enable computation within living cells, we combined de n...
www.science.org
December 13, 2024 at 2:18 PM
This and 'mirror' cells... and we are done
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
Reposted by Yana Bromberg
Association of polygenic scores for neuropsychiatric traits with self-reported professions based on analysis of 420k individuals from UK Biobank and Million Veteran Program. Look at the 'arts & design' category. Artistic talent comes at a cost--a piece of your mind :)
December 12, 2024 at 6:14 AM
Association of polygenic scores for neuropsychiatric traits with self-reported professions based on analysis of 420k individuals from UK Biobank and Million Veteran Program. Look at the 'arts & design' category. Artistic talent comes at a cost--a piece of your mind :)
Excited to share our latest work in #metagenome analysis. We built REMME/REBEAN to analyze and label sequencing #reads.
End result? We can label activity of #microbiome #proteins with minimal homology to #enzymes we've seen before.
Great work by R. Prabakaran!
www.biorxiv.org/content/10.1...
End result? We can label activity of #microbiome #proteins with minimal homology to #enzymes we've seen before.
Great work by R. Prabakaran!
www.biorxiv.org/content/10.1...
Deciphering enzymatic potential in metagenomic reads through DNA language model
The microbial world plays a fundamental role in shaping Earth's biosphere, steering global processes such as carbon and nitrogen cycling, soil rejuvenation, and ecological fortification. An overwhelmi...
www.biorxiv.org
December 12, 2024 at 2:08 PM
Excited to share our latest work in #metagenome analysis. We built REMME/REBEAN to analyze and label sequencing #reads.
End result? We can label activity of #microbiome #proteins with minimal homology to #enzymes we've seen before.
Great work by R. Prabakaran!
www.biorxiv.org/content/10.1...
End result? We can label activity of #microbiome #proteins with minimal homology to #enzymes we've seen before.
Great work by R. Prabakaran!
www.biorxiv.org/content/10.1...