Prof Werner Muller
@wmuee.bsky.social
Immunologist and since a few years also a spatial biologist.
Emeritus Professor at the University of Manchester
https://research.manchester.ac.uk/en/persons/werner.muller/publications/
#Spatialbiology #Immunology #Cytokines #Infection #Bioinformatics
Emeritus Professor at the University of Manchester
https://research.manchester.ac.uk/en/persons/werner.muller/publications/
#Spatialbiology #Immunology #Cytokines #Infection #Bioinformatics
Following news. One of many www.bbc.com/news/article...
Email demands US government workers report DEI programmes
Government employees received emails threatening "consequences" if they did not report DEI work to the White House.
www.bbc.com
January 23, 2025 at 10:25 PM
Following news. One of many www.bbc.com/news/article...
OMAPs have been updated. humanatlas.io/omap
Omap-23, generated on MACSima can be downloaded from zenodo.org/records/1400...
Will post a some images during this year from Omap-23.
The header image of my Bluesky profile is derived from Omar-23.
Omap-23, generated on MACSima can be downloaded from zenodo.org/records/1400...
Will post a some images during this year from Omap-23.
The header image of my Bluesky profile is derived from Omar-23.
Human Reference Atlas Portal
humanatlas.io
January 3, 2025 at 5:31 PM
OMAPs have been updated. humanatlas.io/omap
Omap-23, generated on MACSima can be downloaded from zenodo.org/records/1400...
Will post a some images during this year from Omap-23.
The header image of my Bluesky profile is derived from Omar-23.
Omap-23, generated on MACSima can be downloaded from zenodo.org/records/1400...
Will post a some images during this year from Omap-23.
The header image of my Bluesky profile is derived from Omar-23.
I am happy to see that spatial proteomics is the method of the year 2024. In 2022 we published our MACSima system www.nature.com/articles/s41... , including a very easy to use software for spatial proteomics (Disclaimer: I work at Miltenyi Biotec at the moment).
MACSima imaging cyclic staining (MICS) technology reveals combinatorial target pairs for CAR T cell treatment of solid tumors - Scientific Reports
Scientific Reports - MACSima imaging cyclic staining (MICS) technology reveals combinatorial target pairs for CAR T cell treatment of solid tumors
www.nature.com
December 7, 2024 at 7:14 PM
I am happy to see that spatial proteomics is the method of the year 2024. In 2022 we published our MACSima system www.nature.com/articles/s41... , including a very easy to use software for spatial proteomics (Disclaimer: I work at Miltenyi Biotec at the moment).
OpenAlex: Now I am openalex.org/works?page=1... Gordon Dougon on OpenAlex. Very fluid at the moment.
OpenAlex
openalex.org
December 5, 2024 at 8:39 PM
OpenAlex: Now I am openalex.org/works?page=1... Gordon Dougon on OpenAlex. Very fluid at the moment.
I do not understand why I am not properly linked to my science paper from 1991 on scholarGPS: scholargps.com/search.php?q...
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scholargps.com
December 5, 2024 at 3:21 AM
I do not understand why I am not properly linked to my science paper from 1991 on scholarGPS: scholargps.com/search.php?q...
Elicit.com got two out of three references correct, but used additional references I would not use in the context.
Elicit: The AI Research Assistant
Use AI to search, summarize, extract data from, and chat with over 125 million papers. Used by over 2 million researchers in academia and industry.
Elicit.com
December 1, 2024 at 6:06 PM
Elicit.com got two out of three references correct, but used additional references I would not use in the context.
Just for the record, ChatGPT (free version) also got the three references correctly. ChatGPT did not judge OpenAlex but offered alternative databases to use.
December 1, 2024 at 5:37 PM
Just for the record, ChatGPT (free version) also got the three references correctly. ChatGPT did not judge OpenAlex but offered alternative databases to use.
I tested Gemini (paid subscription) and asked for three original references of my publications that are wrong in OpenAlex. Gemini got the references 100% correct. I liked the summary “The errors described above are hypothetical examples based on the known limitations of OpenAlex. …
December 1, 2024 at 5:23 PM
I tested Gemini (paid subscription) and asked for three original references of my publications that are wrong in OpenAlex. Gemini got the references 100% correct. I liked the summary “The errors described above are hypothetical examples based on the known limitations of OpenAlex. …
I am trying various Ai writing tools now. jenni.ai does not work for me at it only gives me 200 words and a blurry reference at the end of a very general text and asked me to pay if I want to see more.
Jenni AI
Jenni is your AI assistant for all things in your academic journey. We specialise in developing AI that helps you make your writing more efficient, while still keeping control.
jenni.ai
December 1, 2024 at 5:14 PM
I am trying various Ai writing tools now. jenni.ai does not work for me at it only gives me 200 words and a blurry reference at the end of a very general text and asked me to pay if I want to see more.
I found this manuscript on OpenAlex arxiv.org/abs/2401.16359
Reference Coverage Analysis of OpenAlex compared to Web of Science and Scopus
OpenAlex is a promising open source of scholarly metadata, and competitor to established proprietary sources, such as the Web of Science and Scopus. As OpenAlex provides its data freely and openly, it...
arxiv.org
December 1, 2024 at 4:55 PM
I found this manuscript on OpenAlex arxiv.org/abs/2401.16359
paperpal.com seams also to use OpenAlex, I spotted the known problem of OpenAlex with my publication on the description of the VBASE2 database. At least both the cell paper and the science paper are correct. Most likely currently a pre may version of OpenAlex is used. Be aware.
AI Grammar Checker & Online Academic Writing Tool for Researchers | Paperpal
Paperpal is an advanced AI grammar checker and online academic writing tool that identifies language errors and provides instant, in-depth suggestions to help you polish your manuscript. Get started n...
paperpal.com
December 1, 2024 at 4:47 PM
paperpal.com seams also to use OpenAlex, I spotted the known problem of OpenAlex with my publication on the description of the VBASE2 database. At least both the cell paper and the science paper are correct. Most likely currently a pre may version of OpenAlex is used. Be aware.
Should publications based on OpenAlex data be accepted when no additional data validation steps were included and should online tools using OpenAlex data include a clearly visible disclaimer that the underlying data is most likely wrong (at least at the moment) ?
November 30, 2024 at 7:19 PM
Should publications based on OpenAlex data be accepted when no additional data validation steps were included and should online tools using OpenAlex data include a clearly visible disclaimer that the underlying data is most likely wrong (at least at the moment) ?
SemOpenAlex got it correct (semopenalex.org/work/W199753...), but only because they are currently using the may version of OpenAlex. Expect to be wrong as soon as SemOpenAlex updates their data source. They miss my Cell paper from 1993. semopenalex.org/author/A5013.... What a mess.
metaphactory
semopenalex.org
November 30, 2024 at 7:12 PM
SemOpenAlex got it correct (semopenalex.org/work/W199753...), but only because they are currently using the may version of OpenAlex. Expect to be wrong as soon as SemOpenAlex updates their data source. They miss my Cell paper from 1993. semopenalex.org/author/A5013.... What a mess.
Another OpenAlex example openalex.org/works/w19975.... We describe the generation of Interleukin-4 deficient mice (published in Science in 1991). In OpenAlex I am not anymore the last author of my paper (and a lot of citations in the OpenAlex statistics.
OpenAlex
openalex.org
November 30, 2024 at 7:08 PM
Another OpenAlex example openalex.org/works/w19975.... We describe the generation of Interleukin-4 deficient mice (published in Science in 1991). In OpenAlex I am not anymore the last author of my paper (and a lot of citations in the OpenAlex statistics.
Openalex example openalex.org/works/w20365...
Our paper has nothing to do Composition of Human Milk. It shows that Interleukin-10 deficiency in mice leads to inflammatory bowl disease (and the microflora is a major driver), (published in 1993), Please try yourself to find this paper by AI tools.
Our paper has nothing to do Composition of Human Milk. It shows that Interleukin-10 deficiency in mice leads to inflammatory bowl disease (and the microflora is a major driver), (published in 1993), Please try yourself to find this paper by AI tools.
OpenAlex
openalex.org
November 30, 2024 at 7:03 PM
Openalex example openalex.org/works/w20365...
Our paper has nothing to do Composition of Human Milk. It shows that Interleukin-10 deficiency in mice leads to inflammatory bowl disease (and the microflora is a major driver), (published in 1993), Please try yourself to find this paper by AI tools.
Our paper has nothing to do Composition of Human Milk. It shows that Interleukin-10 deficiency in mice leads to inflammatory bowl disease (and the microflora is a major driver), (published in 1993), Please try yourself to find this paper by AI tools.
I am not sure of you know OpenAlex.org. It is a database of scientific literature. The data is used by many secondary literature analysis programs on the Web. The database is full of errors and omissions. I am trying to fix the errors and you can vote for me at tinyurl.com/VoteOpenAlex
OpenAlex
OpenAlex.org
November 29, 2024 at 9:25 AM
I am not sure of you know OpenAlex.org. It is a database of scientific literature. The data is used by many secondary literature analysis programs on the Web. The database is full of errors and omissions. I am trying to fix the errors and you can vote for me at tinyurl.com/VoteOpenAlex
In case you would like to read about combining Protein and RNA in spacial analysis, here is our (Disclaimer: I currently work for Miltenyi Biotec in the area of spatial biology) pre-print from November last year. (www.biorxiv.org/content/10.1...)
Spatial protein and RNA analysis on the same tissue section using MICS technology
Spatial Biology has evolved from the molecular characterization of microdissected cells to high throughput spatial RNA and protein expression analysis at scale. The main limitation of spatial technolo...
www.biorxiv.org
November 27, 2024 at 8:39 AM
In case you would like to read about combining Protein and RNA in spacial analysis, here is our (Disclaimer: I currently work for Miltenyi Biotec in the area of spatial biology) pre-print from November last year. (www.biorxiv.org/content/10.1...)
Here are the links to the published OMAPs:
OMAP-10 (zenodo.org/records/7875...)
OMAP-21 (zenodo.org/records/1313...)
If you need help how to import the data into your software, please feel free to contact me.
The next will be out in December. Stay tuned.
OMAP-10 (zenodo.org/records/7875...)
OMAP-21 (zenodo.org/records/1313...)
If you need help how to import the data into your software, please feel free to contact me.
The next will be out in December. Stay tuned.
OMAP-10: Multiplexed Antibody-Based Imaging of Human Palatine Tonsil with MACSima v1.0
OMAP-10 was designed for MACSima (MACSima imaging cyclic staining) imaging of paraformaldehyde (PFA)-fixed human tonsil samples. The MACSima technology is described in detail in the following publicat...
zenodo.org
November 13, 2024 at 6:21 PM
Here are the links to the published OMAPs:
OMAP-10 (zenodo.org/records/7875...)
OMAP-21 (zenodo.org/records/1313...)
If you need help how to import the data into your software, please feel free to contact me.
The next will be out in December. Stay tuned.
OMAP-10 (zenodo.org/records/7875...)
OMAP-21 (zenodo.org/records/1313...)
If you need help how to import the data into your software, please feel free to contact me.
The next will be out in December. Stay tuned.
Spatial Biology: In case you would like to explore multicolor images (the individual channels are in black and white), here you can find some datasets I uploaded to Zenodo, which are part of the OMAPs (www.nature.com/articles/s41...).
Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging - Nature Methods
Organ Mapping Antibody Panels are a community-led initiative to create standardized antibody panels for multiplexed spatial imaging.
www.nature.com
November 13, 2024 at 6:20 PM
Spatial Biology: In case you would like to explore multicolor images (the individual channels are in black and white), here you can find some datasets I uploaded to Zenodo, which are part of the OMAPs (www.nature.com/articles/s41...).