VolumeEM
@volumeem1.bsky.social
Building an infrastructure for volume EM (vEM) to serve the bioscience research community one slice at at time.
🌟 Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! 🌟
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
September 29, 2025 at 9:40 AM
🌟 Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! 🌟
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
📣 Join Us for the 6th Annual Volume EM Community Initiative Town Hall Meeting on October 9th, 2025 from 3-6pm BST / 10am-1pm ET. A key theme of this year’s Town Hall is strengthening connections across the global community.
👉 Register now on our website: www.volumeem.org/2025-town-ha...
👉 Register now on our website: www.volumeem.org/2025-town-ha...
August 23, 2025 at 9:18 AM
📣 Join Us for the 6th Annual Volume EM Community Initiative Town Hall Meeting on October 9th, 2025 from 3-6pm BST / 10am-1pm ET. A key theme of this year’s Town Hall is strengthening connections across the global community.
👉 Register now on our website: www.volumeem.org/2025-town-ha...
👉 Register now on our website: www.volumeem.org/2025-town-ha...
Big news! volumeEM has been ranked the second most requested technology of 2024 in Biological Imaging in the latest Euro-Bioimaging Annual Report!
📖 Read the full report here: www.eurobioimaging.eu/news/euro-bi...
#volumeEM
📖 Read the full report here: www.eurobioimaging.eu/news/euro-bi...
#volumeEM
July 22, 2025 at 12:38 PM
Big news! volumeEM has been ranked the second most requested technology of 2024 in Biological Imaging in the latest Euro-Bioimaging Annual Report!
📖 Read the full report here: www.eurobioimaging.eu/news/euro-bi...
#volumeEM
📖 Read the full report here: www.eurobioimaging.eu/news/euro-bi...
#volumeEM
✨ 𝗦𝗮𝘃𝗲 𝘁𝗵𝗲 𝗗𝗮𝘁𝗲! ✨
We’re excited to announce that the 𝐯𝐄𝐌 𝐓𝐞𝐜𝐡𝐧𝐨𝐥𝐨𝐠𝐲 𝐅𝐨𝐫𝐮𝐦 𝟐𝟎𝟐𝟔 is now officially on the calendar!
📅 October 12-15, 2026
📍 Peking University, Beijing, China
Stay tuned for more details!
We’re excited to announce that the 𝐯𝐄𝐌 𝐓𝐞𝐜𝐡𝐧𝐨𝐥𝐨𝐠𝐲 𝐅𝐨𝐫𝐮𝐦 𝟐𝟎𝟐𝟔 is now officially on the calendar!
📅 October 12-15, 2026
📍 Peking University, Beijing, China
Stay tuned for more details!
July 14, 2025 at 10:36 PM
✨ 𝗦𝗮𝘃𝗲 𝘁𝗵𝗲 𝗗𝗮𝘁𝗲! ✨
We’re excited to announce that the 𝐯𝐄𝐌 𝐓𝐞𝐜𝐡𝐧𝐨𝐥𝐨𝐠𝐲 𝐅𝐨𝐫𝐮𝐦 𝟐𝟎𝟐𝟔 is now officially on the calendar!
📅 October 12-15, 2026
📍 Peking University, Beijing, China
Stay tuned for more details!
We’re excited to announce that the 𝐯𝐄𝐌 𝐓𝐞𝐜𝐡𝐧𝐨𝐥𝐨𝐠𝐲 𝐅𝐨𝐫𝐮𝐦 𝟐𝟎𝟐𝟔 is now officially on the calendar!
📅 October 12-15, 2026
📍 Peking University, Beijing, China
Stay tuned for more details!
Next Euro-Bioimaging Virtual Pub/volumeEM Series!
Join Andreas Müller @andimicroscopy.bsky.social from Paul Langerhans Institute, TU Dresden, for a talk on "The Exploratory Potential of Volume Electron Microscopy"!
🗓️ June 20th, 2025
⏰ 13:00 CEST
🔗 Register: www.eurobioimaging.eu/events/explo...
Join Andreas Müller @andimicroscopy.bsky.social from Paul Langerhans Institute, TU Dresden, for a talk on "The Exploratory Potential of Volume Electron Microscopy"!
🗓️ June 20th, 2025
⏰ 13:00 CEST
🔗 Register: www.eurobioimaging.eu/events/explo...
June 10, 2025 at 12:30 PM
Next Euro-Bioimaging Virtual Pub/volumeEM Series!
Join Andreas Müller @andimicroscopy.bsky.social from Paul Langerhans Institute, TU Dresden, for a talk on "The Exploratory Potential of Volume Electron Microscopy"!
🗓️ June 20th, 2025
⏰ 13:00 CEST
🔗 Register: www.eurobioimaging.eu/events/explo...
Join Andreas Müller @andimicroscopy.bsky.social from Paul Langerhans Institute, TU Dresden, for a talk on "The Exploratory Potential of Volume Electron Microscopy"!
🗓️ June 20th, 2025
⏰ 13:00 CEST
🔗 Register: www.eurobioimaging.eu/events/explo...
empanada new version (v1.2) released!!
empanada.readthedocs.io/en/latest/ You’ll see many goodies in this release:
1. Two new models: DropNet and NucleoNet
2. Several new modules includes tiling
Enjoy and please let us know if this works for you, happy segmenting!
empanada.readthedocs.io/en/latest/ You’ll see many goodies in this release:
1. Two new models: DropNet and NucleoNet
2. Several new modules includes tiling
Enjoy and please let us know if this works for you, happy segmenting!
May 5, 2025 at 9:39 PM
empanada new version (v1.2) released!!
empanada.readthedocs.io/en/latest/ You’ll see many goodies in this release:
1. Two new models: DropNet and NucleoNet
2. Several new modules includes tiling
Enjoy and please let us know if this works for you, happy segmenting!
empanada.readthedocs.io/en/latest/ You’ll see many goodies in this release:
1. Two new models: DropNet and NucleoNet
2. Several new modules includes tiling
Enjoy and please let us know if this works for you, happy segmenting!
🔎🌏🧭🔬 #volumeEM facility found in
Electron Microscopy Unit
NUS Yong Loo Lin School of Medicine
With #SBF-SEM #sAT #ssTEM
Website
bit.ly/3FbHnq7
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Electron Microscopy Unit
NUS Yong Loo Lin School of Medicine
With #SBF-SEM #sAT #ssTEM
Website
bit.ly/3FbHnq7
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
March 7, 2025 at 4:06 PM
🔎🌏🧭🔬 #volumeEM facility found in
Electron Microscopy Unit
NUS Yong Loo Lin School of Medicine
With #SBF-SEM #sAT #ssTEM
Website
bit.ly/3FbHnq7
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Electron Microscopy Unit
NUS Yong Loo Lin School of Medicine
With #SBF-SEM #sAT #ssTEM
Website
bit.ly/3FbHnq7
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
🔎🌍#volumeEM facility spotted in
Max-Planck-Institute for Multidisciplinary Sciences!
with FIB-SEM, Automated tape sectioning and (sAT)
Website ⬇
www.mpinat.mpg.de/em-moebius
____________________________________
Global vEM map ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Max-Planck-Institute for Multidisciplinary Sciences!
with FIB-SEM, Automated tape sectioning and (sAT)
Website ⬇
www.mpinat.mpg.de/em-moebius
____________________________________
Global vEM map ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
February 27, 2025 at 8:36 AM
🔎🌍#volumeEM facility spotted in
Max-Planck-Institute for Multidisciplinary Sciences!
with FIB-SEM, Automated tape sectioning and (sAT)
Website ⬇
www.mpinat.mpg.de/em-moebius
____________________________________
Global vEM map ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Max-Planck-Institute for Multidisciplinary Sciences!
with FIB-SEM, Automated tape sectioning and (sAT)
Website ⬇
www.mpinat.mpg.de/em-moebius
____________________________________
Global vEM map ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
🎥🧫 We are looking for vEM YouTubers!
Do you have a vEM technique in mind you'd like to share?🤔
A 2-5 minute video is perfectly ok! Larger workflows are also ok.
Submit your idea: vemcommunity@gmail.com
Or fill up this form: bit.ly/41eyXWd
Optional: We can send you a recording Kit free of charge!
Do you have a vEM technique in mind you'd like to share?🤔
A 2-5 minute video is perfectly ok! Larger workflows are also ok.
Submit your idea: vemcommunity@gmail.com
Or fill up this form: bit.ly/41eyXWd
Optional: We can send you a recording Kit free of charge!
February 24, 2025 at 3:53 PM
🎥🧫 We are looking for vEM YouTubers!
Do you have a vEM technique in mind you'd like to share?🤔
A 2-5 minute video is perfectly ok! Larger workflows are also ok.
Submit your idea: vemcommunity@gmail.com
Or fill up this form: bit.ly/41eyXWd
Optional: We can send you a recording Kit free of charge!
Do you have a vEM technique in mind you'd like to share?🤔
A 2-5 minute video is perfectly ok! Larger workflows are also ok.
Submit your idea: vemcommunity@gmail.com
Or fill up this form: bit.ly/41eyXWd
Optional: We can send you a recording Kit free of charge!
🌍💡🔬
Very excited about the Euro-Bioimaging Virtual Pub Volume EM series!!
Do not miss this insightful talk on 3D nanoscale architecture and Physiology of the Human Airway Epithelium by Aaran Vijayakumaran.
Date: February 28, 2025, 13:00 CET
Register: www.eurobioimaging.eu/our-events/v...
Very excited about the Euro-Bioimaging Virtual Pub Volume EM series!!
Do not miss this insightful talk on 3D nanoscale architecture and Physiology of the Human Airway Epithelium by Aaran Vijayakumaran.
Date: February 28, 2025, 13:00 CET
Register: www.eurobioimaging.eu/our-events/v...
February 14, 2025 at 3:37 PM
🌍💡🔬
Very excited about the Euro-Bioimaging Virtual Pub Volume EM series!!
Do not miss this insightful talk on 3D nanoscale architecture and Physiology of the Human Airway Epithelium by Aaran Vijayakumaran.
Date: February 28, 2025, 13:00 CET
Register: www.eurobioimaging.eu/our-events/v...
Very excited about the Euro-Bioimaging Virtual Pub Volume EM series!!
Do not miss this insightful talk on 3D nanoscale architecture and Physiology of the Human Airway Epithelium by Aaran Vijayakumaran.
Date: February 28, 2025, 13:00 CET
Register: www.eurobioimaging.eu/our-events/v...
🤔❓💻🧫🦠
Do you know that the ImageJ plugin DenoisEM can improve the quality of large-scale volumes of EM imaging?
The authors used this plugin to analyse EM volumes obtained either by FIB-SEM and SBF-SEM using automated analysis.
Paper courtesy of Joris Roels et al.
bioimagingcore.be/DenoisEM
Do you know that the ImageJ plugin DenoisEM can improve the quality of large-scale volumes of EM imaging?
The authors used this plugin to analyse EM volumes obtained either by FIB-SEM and SBF-SEM using automated analysis.
Paper courtesy of Joris Roels et al.
bioimagingcore.be/DenoisEM
February 7, 2025 at 1:14 PM
🤔❓💻🧫🦠
Do you know that the ImageJ plugin DenoisEM can improve the quality of large-scale volumes of EM imaging?
The authors used this plugin to analyse EM volumes obtained either by FIB-SEM and SBF-SEM using automated analysis.
Paper courtesy of Joris Roels et al.
bioimagingcore.be/DenoisEM
Do you know that the ImageJ plugin DenoisEM can improve the quality of large-scale volumes of EM imaging?
The authors used this plugin to analyse EM volumes obtained either by FIB-SEM and SBF-SEM using automated analysis.
Paper courtesy of Joris Roels et al.
bioimagingcore.be/DenoisEM
🔎🌏🧭🔬 #volumeEM facility found in
Electron Microscopy Unit at City Campus
Max-Planck-Institute for Multidisciplinary Sciences
With #FIB-SEM #sAT #Automated tape sectioning
Website
bit.ly/4hl0fRW
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Electron Microscopy Unit at City Campus
Max-Planck-Institute for Multidisciplinary Sciences
With #FIB-SEM #sAT #Automated tape sectioning
Website
bit.ly/4hl0fRW
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
February 3, 2025 at 1:18 PM
🔎🌏🧭🔬 #volumeEM facility found in
Electron Microscopy Unit at City Campus
Max-Planck-Institute for Multidisciplinary Sciences
With #FIB-SEM #sAT #Automated tape sectioning
Website
bit.ly/4hl0fRW
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Electron Microscopy Unit at City Campus
Max-Planck-Institute for Multidisciplinary Sciences
With #FIB-SEM #sAT #Automated tape sectioning
Website
bit.ly/4hl0fRW
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
🦠🔬😱⚛️
Do you know that FIB-SEM can access 3D resolutions of tens of nanometres or less allowing the study of virus-cell interactions?
Here, Valentina Baena et al. showed that SARS-CoV-2 preferentially locate at certain cell areas using FIB-SEM.
DOI: https:// doi.org/10.3390/v13040611
Do you know that FIB-SEM can access 3D resolutions of tens of nanometres or less allowing the study of virus-cell interactions?
Here, Valentina Baena et al. showed that SARS-CoV-2 preferentially locate at certain cell areas using FIB-SEM.
DOI: https:// doi.org/10.3390/v13040611
January 28, 2025 at 8:12 PM
🦠🔬😱⚛️
Do you know that FIB-SEM can access 3D resolutions of tens of nanometres or less allowing the study of virus-cell interactions?
Here, Valentina Baena et al. showed that SARS-CoV-2 preferentially locate at certain cell areas using FIB-SEM.
DOI: https:// doi.org/10.3390/v13040611
Do you know that FIB-SEM can access 3D resolutions of tens of nanometres or less allowing the study of virus-cell interactions?
Here, Valentina Baena et al. showed that SARS-CoV-2 preferentially locate at certain cell areas using FIB-SEM.
DOI: https:// doi.org/10.3390/v13040611
🔎🌏🧭🔬 #volumeEM facility found in
Section of Electron Microscopy
National Institute for Physiological Sciences
With #SBF-SEM #FIB-SEM #sAT #gtTEM
Website
bit.ly/3PGjpFz
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Section of Electron Microscopy
National Institute for Physiological Sciences
With #SBF-SEM #FIB-SEM #sAT #gtTEM
Website
bit.ly/3PGjpFz
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
January 16, 2025 at 2:13 PM
🔎🌏🧭🔬 #volumeEM facility found in
Section of Electron Microscopy
National Institute for Physiological Sciences
With #SBF-SEM #FIB-SEM #sAT #gtTEM
Website
bit.ly/3PGjpFz
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Section of Electron Microscopy
National Institute for Physiological Sciences
With #SBF-SEM #FIB-SEM #sAT #gtTEM
Website
bit.ly/3PGjpFz
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
🙌🔬🦠
Join our EMofCellsTissuesOrganisms Slack channel where lots of EM (including Volume EM) is happening!
Join using this link: join.slack.com/t/emofcellti...
Join our EMofCellsTissuesOrganisms Slack channel where lots of EM (including Volume EM) is happening!
Join using this link: join.slack.com/t/emofcellti...
January 15, 2025 at 1:01 PM
🙌🔬🦠
Join our EMofCellsTissuesOrganisms Slack channel where lots of EM (including Volume EM) is happening!
Join using this link: join.slack.com/t/emofcellti...
Join our EMofCellsTissuesOrganisms Slack channel where lots of EM (including Volume EM) is happening!
Join using this link: join.slack.com/t/emofcellti...
🔎🌏🧭🔬 #volumeEM facility found in
Advanced Bioimaging RTP
University of Warwick
With #ssET
Website
bit.ly/4gYua1K
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Advanced Bioimaging RTP
University of Warwick
With #ssET
Website
bit.ly/4gYua1K
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
January 9, 2025 at 5:45 PM
🔎🌏🧭🔬 #volumeEM facility found in
Advanced Bioimaging RTP
University of Warwick
With #ssET
Website
bit.ly/4gYua1K
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
Advanced Bioimaging RTP
University of Warwick
With #ssET
Website
bit.ly/4gYua1K
#globalvEMmap ⬇
bit.ly/3xKN5bD
Add your #volumeEM facility ⬇
bit.ly/3EogwUw
November 27, 2024 at 5:14 PM
Thrilled to share that the VolumeEM community has been funded by @CZIScience to accelerate the adoption of vEM technology by building effective resources, expanding the global community, and emphasising outreach and dissemination.
February 20, 2025 at 5:23 PM
Thrilled to share that the VolumeEM community has been funded by @CZIScience to accelerate the adoption of vEM technology by building effective resources, expanding the global community, and emphasising outreach and dissemination.
Our @VolumeEM1 website being featured at @SocEMTech meeting today!
February 20, 2025 at 5:22 PM
Our @VolumeEM1 website being featured at @SocEMTech meeting today!
For you diaries: The next instalment of the vEM series in the Virtual Pub is on December 16th
February 20, 2025 at 5:22 PM
For you diaries: The next instalment of the vEM series in the Virtual Pub is on December 16th
FRIDAY 21st OCT - the next event in the @EuroBioImaging
Virtual pub series is a talk by @NalanLiv on Correlative Organelle Microscopy. Get more details here
volumeem.org/events.html
Virtual pub series is a talk by @NalanLiv on Correlative Organelle Microscopy. Get more details here
volumeem.org/events.html
February 20, 2025 at 5:21 PM
FRIDAY 21st OCT - the next event in the @EuroBioImaging
Virtual pub series is a talk by @NalanLiv on Correlative Organelle Microscopy. Get more details here
volumeem.org/events.html
Virtual pub series is a talk by @NalanLiv on Correlative Organelle Microscopy. Get more details here
volumeem.org/events.html
We’re pleased to announce that the #volumeEM primer written by @EM_STP @ilastik_team @Sci_Wanderlust @kdmicheva @KedarNarayan2 @SchwabYannick @btitze @PaulVerkade @avweigel and others is now online.
You can access it here…
rdcu.be/cQ9Rw
You can access it here…
rdcu.be/cQ9Rw
February 20, 2025 at 5:20 PM
We’re pleased to announce that the #volumeEM primer written by @EM_STP @ilastik_team @Sci_Wanderlust @kdmicheva @KedarNarayan2 @SchwabYannick @btitze @PaulVerkade @avweigel and others is now online.
You can access it here…
rdcu.be/cQ9Rw
You can access it here…
rdcu.be/cQ9Rw
Don't miss the new series with @VolumeEM1 at the #VirtualPub - starting on:date:Friday June 3rd! Join us for a fantastic talk from @KedarNarayan2 of @theNCI, entitled “Volume #ElectronMicroscopy: Concepts, Correlations and Computations.”
All are welcome!
All are welcome!
February 20, 2025 at 5:19 PM
Don't miss the new series with @VolumeEM1 at the #VirtualPub - starting on:date:Friday June 3rd! Join us for a fantastic talk from @KedarNarayan2 of @theNCI, entitled “Volume #ElectronMicroscopy: Concepts, Correlations and Computations.”
All are welcome!
All are welcome!
When you have read the papers and made a plan it's time to go #shopping. The Training WG have created a list of suppliers for #volumeEM reagents and equipment from around the world.
volumeem.org/em-suppliers.h…
volumeem.org/em-suppliers.h…
February 20, 2025 at 5:19 PM
When you have read the papers and made a plan it's time to go #shopping. The Training WG have created a list of suppliers for #volumeEM reagents and equipment from around the world.
volumeem.org/em-suppliers.h…
volumeem.org/em-suppliers.h…
Want to know more about #volumeEM? The Training WG has assembled a list of introductory papers in the following categories:
General vEM Reviews
Sample preparation
Array tomography
FIB-SEM
SBF-SEM
Data Processing
volumeem.org/introvem-paper…
General vEM Reviews
Sample preparation
Array tomography
FIB-SEM
SBF-SEM
Data Processing
volumeem.org/introvem-paper…
February 20, 2025 at 5:19 PM
Want to know more about #volumeEM? The Training WG has assembled a list of introductory papers in the following categories:
General vEM Reviews
Sample preparation
Array tomography
FIB-SEM
SBF-SEM
Data Processing
volumeem.org/introvem-paper…
General vEM Reviews
Sample preparation
Array tomography
FIB-SEM
SBF-SEM
Data Processing
volumeem.org/introvem-paper…