Fyodor Urnov
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urnov.bsky.social
Fyodor Urnov
@urnov.bsky.social
Clinic-minded genome + epigenome editor. Professor of Molecular Therapeutics, UC Berkeley. Director for Technology and Translation, Innovative Genomics Institute, ibid.
Beatles fan.
Art work credit: Fyodor Vasiliev "A Meadow in the Rain" (1872).
Please consider La Châtaigne in Lafayette. I came back from two weeks living in the Marais this summer and having the real thing daily. The croissant beurre d’Isigny at La C is as close to the original as one can imagine. Get there early - they sell out fast. They open at 8. 🇫🇷
October 21, 2025 at 9:44 PM
I will switch out of "dripping with scathing sarcasm" mode and cite a lovely paper by David, Shengdar, Mitch, et al - one of many such papers - where this technically trivial experiment is done.
www.nature.com/articles/s41...
Potent and uniform fetal hemoglobin induction via base editing - Nature Genetics
A comparison of fetal hemoglobin gene editing strategies using human sickle cell disease donor cells and in vivo transplantation finds that adenine base editing of the –175A>G site in the γ-globin ...
www.nature.com
September 7, 2025 at 4:59 PM
Around back then I became an ace at dispensing with it 500 ul PB into 20 qiagen columns without splashing chaotrope all over the bench.
August 6, 2025 at 5:50 PM
+1
My students have a digital one and my reaction is - why?
August 5, 2025 at 9:10 PM
This is v helpful.
I'd love to know how many genes are like Car2.
Five percent? Ten percent?
Because looping is everywhere, and so-called TADs as well, but if 5% of the genes actually depend on looping for their control - well, this means the vast majority of looping is gene-control irrelevant.
June 10, 2025 at 12:34 PM
I missed this paper - this is an important finding - will read. Thank you!
June 9, 2025 at 9:39 PM
At Vijay's suggestion I looked at your paper (Hansen et al).
So would you say Cas2 is the poster child for cohesin-mediated loop essentiality in gene control? B/c clearly for Sox2 it's not true. What other genes like Car2 are this well-characterized wrt this dependency?
June 9, 2025 at 12:33 PM
Stefan, I agree with you completely.
Is there evidence that eliminating cohesin-mediated looping affects HBA expression in adult human erythropoiesis?
(apologies if I missed it)
I am fine with local looping that's cohesin-independent as instructive to transcription.
June 9, 2025 at 12:25 PM
Precisely.
June 9, 2025 at 2:12 AM
I mean, you kill looping and transcription goes - whatevs.
This is a major epistemological challenge.
June 9, 2025 at 2:03 AM
You realize this is a Sangamo paper by my colleagues when I was there? 🤓
What can be showed to happen does not mean happens naturally. 🤓
June 9, 2025 at 1:42 AM