Timothe Rouze
@tmthrz.bsky.social
PhD student in computational biology in Lille.
Reposted by Timothe Rouze
REINDEER2: practical abundance index at scale https://www.biorxiv.org/content/10.1101/2025.06.16.659990v1
June 17, 2025 at 1:46 PM
REINDEER2: practical abundance index at scale https://www.biorxiv.org/content/10.1101/2025.06.16.659990v1
Reposted by Timothe Rouze
The sequence analysis session of #RECOMB2025 is off to a great start with @jimshaw.bsky.social presenting devider, a new algorithm for haplotyping small sequences from long-read sequencing.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
April 27, 2025 at 1:27 AM
The sequence analysis session of #RECOMB2025 is off to a great start with @jimshaw.bsky.social presenting devider, a new algorithm for haplotyping small sequences from long-read sequencing.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Timothe Rouze
@bonsaiseqbioinfo.bsky.social friends in Seoul @rayanchikhi.bsky.social @imartayan.bsky.social @tmthrz.bsky.social 🫰🏻🫰🏻🫰🏻
April 25, 2025 at 7:51 AM
@bonsaiseqbioinfo.bsky.social friends in Seoul @rayanchikhi.bsky.social @imartayan.bsky.social @tmthrz.bsky.social 🫰🏻🫰🏻🫰🏻
Reposted by Timothe Rouze
@camillemrcht.bsky.social is back on stage to present Vizitig, an interactive visualization tool for sequencing datasets developped by @bdegardins.bsky.social
April 25, 2025 at 5:45 AM
@camillemrcht.bsky.social is back on stage to present Vizitig, an interactive visualization tool for sequencing datasets developped by @bdegardins.bsky.social
Reposted by Timothe Rouze
This time, @camillemrcht.bsky.social is on the other side of the stage to present the next version of REINDEER, a scalable index for k-mer abundances
April 25, 2025 at 5:11 AM
Reposted by Timothe Rouze
Now our @tmthrz.bsky.social presenting his approach for compressing collections of unitigs - Rayan Chikhi 🤝🏻 @npmalfoy.bsky.social
April 25, 2025 at 5:13 AM
Now our @tmthrz.bsky.social presenting his approach for compressing collections of unitigs - Rayan Chikhi 🤝🏻 @npmalfoy.bsky.social
Reposted by Timothe Rouze
April 25, 2025 at 12:40 AM
Reposted by Timothe Rouze
Reposted by Timothe Rouze
link.springer.com/article/10.1... our article on large scale comparison of datasets in a Minhash-like setting, but for heterogenous document sizes AND keeping lexicographic information, is out in AMB. By @tmthrz.bsky.social @imartayan.bsky.social @camillemrcht.bsky.social @npmalfoy.bsky.social
Fractional hitting sets for efficient multiset sketching - Algorithms for Molecular Biology
The exponential increase in publicly available sequencing data and genomic resources necessitates the development of highly efficient methods for data processing and analysis. Locality-sensitive hashi...
link.springer.com
February 10, 2025 at 3:10 PM
link.springer.com/article/10.1... our article on large scale comparison of datasets in a Minhash-like setting, but for heterogenous document sizes AND keeping lexicographic information, is out in AMB. By @tmthrz.bsky.social @imartayan.bsky.social @camillemrcht.bsky.social @npmalfoy.bsky.social