Teresa O'Meara
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teresaomeara.bsky.social
Teresa O'Meara
@teresaomeara.bsky.social
Associate professor in microbiology | fungal pathogenesis + genetics | UMichigan
Maybe! We tried to compare sequence vs. structure for all the genes in our favorite genome (C. auris) using FoldSeek to identify structural similarity. The scripts are here: github.com/maomlab/poc4 and the preprint is here: www.biorxiv.org/content/10.1...

Here's the relevant panel:
June 24, 2025 at 11:03 PM
I saw the best bumper sticker today
May 24, 2025 at 12:20 AM
We designed a new protein to fulfill the geometric constraints of the structure and showed that it too can complement the mutant
May 16, 2025 at 5:07 PM
To determine whether these changes were impacting function, we were able to complement the thermotolerance defect of the C. auris mutant with the S. cerevisiae protein, despite only 20% identity
May 16, 2025 at 5:04 PM
We determined that this protein was evolving fast, even faster than other proteins in the proteasome (like Pup2) or even its dimer protein Irc25. This was unexpected, as co-evolution would suggest that proteins involved in the same process would evolve at the same rate
May 16, 2025 at 5:02 PM
A particularly interesting test case was an uncharacterized protein that looked like a proteasome assembly chaperone.
May 16, 2025 at 5:00 PM
When we used a structural similarity search, we found a whole pile of proteins that had good structure hits but bad sequence hits
May 16, 2025 at 4:58 PM