Stefano Mangiola
@stemang.bsky.social
Computational cancer-immunology and tumour microenvironment
@SAiGENCI and @WEHI_research, VCA fellow @VicGovDH
@SAiGENCI and @WEHI_research, VCA fellow @VicGovDH
ABACBS/BioC Asia 2025 Workshops are coming! @ Adelaide 27-28 November.
Join us in November for two days of deep-dive sessions on scalable bioinformatics, spatial omics, AI-driven genomics, and more
blackochrelabs.au/abacbs2025_w...
#Bioinformatics @abacbs.bsky.social @bioconductor.bsky.social
Join us in November for two days of deep-dive sessions on scalable bioinformatics, spatial omics, AI-driven genomics, and more
blackochrelabs.au/abacbs2025_w...
#Bioinformatics @abacbs.bsky.social @bioconductor.bsky.social
October 14, 2025 at 12:46 AM
ABACBS/BioC Asia 2025 Workshops are coming! @ Adelaide 27-28 November.
Join us in November for two days of deep-dive sessions on scalable bioinformatics, spatial omics, AI-driven genomics, and more
blackochrelabs.au/abacbs2025_w...
#Bioinformatics @abacbs.bsky.social @bioconductor.bsky.social
Join us in November for two days of deep-dive sessions on scalable bioinformatics, spatial omics, AI-driven genomics, and more
blackochrelabs.au/abacbs2025_w...
#Bioinformatics @abacbs.bsky.social @bioconductor.bsky.social
Join #AI and #Immunology!
📢 Fully funded #PhD @saigenci.bsky.social: develop AI to chart immune diversity across the population, in #cancer.
CV, transcript, and a one-page statement by 30 August 2025 → www.linkedin.com/feed/update/...
#PhDOpportunity #MachineLearning #SingleCell
📢 Fully funded #PhD @saigenci.bsky.social: develop AI to chart immune diversity across the population, in #cancer.
CV, transcript, and a one-page statement by 30 August 2025 → www.linkedin.com/feed/update/...
#PhDOpportunity #MachineLearning #SingleCell
August 6, 2025 at 2:56 AM
Join #AI and #Immunology!
📢 Fully funded #PhD @saigenci.bsky.social: develop AI to chart immune diversity across the population, in #cancer.
CV, transcript, and a one-page statement by 30 August 2025 → www.linkedin.com/feed/update/...
#PhDOpportunity #MachineLearning #SingleCell
📢 Fully funded #PhD @saigenci.bsky.social: develop AI to chart immune diversity across the population, in #cancer.
CV, transcript, and a one-page statement by 30 August 2025 → www.linkedin.com/feed/update/...
#PhDOpportunity #MachineLearning #SingleCell
Two days to apply for a BiocAsia workshop!
- Did you develop a package you want to showcase?
- You want to share an analysis workflow for your favourite data type?
This is your time to share this with the community!
Submission -> biocasia2025.bioconductor.org
@bioconductor.bsky.social
- Did you develop a package you want to showcase?
- You want to share an analysis workflow for your favourite data type?
This is your time to share this with the community!
Submission -> biocasia2025.bioconductor.org
@bioconductor.bsky.social
July 30, 2025 at 12:46 AM
Two days to apply for a BiocAsia workshop!
- Did you develop a package you want to showcase?
- You want to share an analysis workflow for your favourite data type?
This is your time to share this with the community!
Submission -> biocasia2025.bioconductor.org
@bioconductor.bsky.social
- Did you develop a package you want to showcase?
- You want to share an analysis workflow for your favourite data type?
This is your time to share this with the community!
Submission -> biocasia2025.bioconductor.org
@bioconductor.bsky.social
Today, I had a blast at the @mig-unimelb.bsky.social
MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology.
Thanks Heejung, Kim-Anh and all the MIG!
events.unimelb.edu.au/MIG/event/45...
MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology.
Thanks Heejung, Kim-Anh and all the MIG!
events.unimelb.edu.au/MIG/event/45...
May 23, 2025 at 6:18 AM
Today, I had a blast at the @mig-unimelb.bsky.social
MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology.
Thanks Heejung, Kim-Anh and all the MIG!
events.unimelb.edu.au/MIG/event/45...
MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology.
Thanks Heejung, Kim-Anh and all the MIG!
events.unimelb.edu.au/MIG/event/45...
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
March 17, 2025 at 6:32 AM
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
📢 An exciting #Postdoc position opened in our laboratory for a junior #Bioinformatician!
Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe.
careers.adelaide.edu.au/cw/en/job/51...
Pls share! 🙏
#postdocposition
Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe.
careers.adelaide.edu.au/cw/en/job/51...
Pls share! 🙏
#postdocposition
February 11, 2025 at 11:40 PM
📢 An exciting #Postdoc position opened in our laboratory for a junior #Bioinformatician!
Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe.
careers.adelaide.edu.au/cw/en/job/51...
Pls share! 🙏
#postdocposition
Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe.
careers.adelaide.edu.au/cw/en/job/51...
Pls share! 🙏
#postdocposition
We (Chen Zhan!) just launched #sccomp for #Python!
Testing for differences in cell-type proportion in #singlecell #spatial data?
#sccomp is a mixed-effect Bayesian model
- Use sum-constrained BetaBinomial distribution
- Outliers detect.
- Remove unwanted effects
github.com/MangiolaLabo...
Testing for differences in cell-type proportion in #singlecell #spatial data?
#sccomp is a mixed-effect Bayesian model
- Use sum-constrained BetaBinomial distribution
- Outliers detect.
- Remove unwanted effects
github.com/MangiolaLabo...
January 22, 2025 at 2:58 AM
We (Chen Zhan!) just launched #sccomp for #Python!
Testing for differences in cell-type proportion in #singlecell #spatial data?
#sccomp is a mixed-effect Bayesian model
- Use sum-constrained BetaBinomial distribution
- Outliers detect.
- Remove unwanted effects
github.com/MangiolaLabo...
Testing for differences in cell-type proportion in #singlecell #spatial data?
#sccomp is a mixed-effect Bayesian model
- Use sum-constrained BetaBinomial distribution
- Outliers detect.
- Remove unwanted effects
github.com/MangiolaLabo...
📢💻🧪 2 #PhD #Scholarships available @SAiGENCI:
1) Hybrid wet-dry: #multiomics to predict neoadjuvant response in #cancer
2) #Bioinformatics, comp-bio: large-scale #singlecell modelling and infrastructure
🔗https://researchers.adelaide.edu.au/profile/stefano.mangiola#my-research
Please share! 🙏
1) Hybrid wet-dry: #multiomics to predict neoadjuvant response in #cancer
2) #Bioinformatics, comp-bio: large-scale #singlecell modelling and infrastructure
🔗https://researchers.adelaide.edu.au/profile/stefano.mangiola#my-research
Please share! 🙏
November 15, 2024 at 1:02 AM
📢💻🧪 2 #PhD #Scholarships available @SAiGENCI:
1) Hybrid wet-dry: #multiomics to predict neoadjuvant response in #cancer
2) #Bioinformatics, comp-bio: large-scale #singlecell modelling and infrastructure
🔗https://researchers.adelaide.edu.au/profile/stefano.mangiola#my-research
Please share! 🙏
1) Hybrid wet-dry: #multiomics to predict neoadjuvant response in #cancer
2) #Bioinformatics, comp-bio: large-scale #singlecell modelling and infrastructure
🔗https://researchers.adelaide.edu.au/profile/stefano.mangiola#my-research
Please share! 🙏
Amazing #BiocAsia2024 event! Thanks to all who participated!
Looking forward to next year!
@bioconductor.bsky.social
Looking forward to next year!
@bioconductor.bsky.social
November 11, 2024 at 8:19 AM
Amazing #BiocAsia2024 event! Thanks to all who participated!
Looking forward to next year!
@bioconductor.bsky.social
Looking forward to next year!
@bioconductor.bsky.social
Hello Community! Don't miss the #tidyomics meeting in one week! All welcome! plz share 🙏
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
August 21, 2024 at 12:52 AM
Hello Community! Don't miss the #tidyomics meeting in one week! All welcome! plz share 🙏
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
Great 2nd #tidyomics meeting!
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
August 5, 2024 at 2:45 AM
Great 2nd #tidyomics meeting!
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
🧹🧬💻Exciting first #tidyomics @bioconductor meeting!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
July 17, 2024 at 4:58 AM
🧹🧬💻Exciting first #tidyomics @bioconductor meeting!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
Join us Tuesday 16th of JULY for a #tidyomics Zoom celebration and open discussion about #future plans!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
July 2, 2024 at 12:47 PM
Join us Tuesday 16th of JULY for a #tidyomics Zoom celebration and open discussion about #future plans!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
To celebrate 🥳 and discuss future plans of #tidyomics, we are organizing a #Zoom party/getting-together!
This is #open to everyone, so please join us and let's walk together!
When would you prefer? Please reply to the #poll below for the best time zone.
This is #open to everyone, so please join us and let's walk together!
When would you prefer? Please reply to the #poll below for the best time zone.
June 18, 2024 at 4:17 AM
To celebrate 🥳 and discuss future plans of #tidyomics, we are organizing a #Zoom party/getting-together!
This is #open to everyone, so please join us and let's walk together!
When would you prefer? Please reply to the #poll below for the best time zone.
This is #open to everyone, so please join us and let's walk together!
When would you prefer? Please reply to the #poll below for the best time zone.
I will be at the #ECCB2024 this September. If someone wants to join me in teaching/helping with the #tidyomics #workshop please let me know!
eccb2024.fi/workshops-tu... Together is more fun! :)
#Bioconductor #ECCB2024 #SAiGENCI #WEHI_research
eccb2024.fi/workshops-tu... Together is more fun! :)
#Bioconductor #ECCB2024 #SAiGENCI #WEHI_research
June 13, 2024 at 9:27 AM
I will be at the #ECCB2024 this September. If someone wants to join me in teaching/helping with the #tidyomics #workshop please let me know!
eccb2024.fi/workshops-tu... Together is more fun! :)
#Bioconductor #ECCB2024 #SAiGENCI #WEHI_research
eccb2024.fi/workshops-tu... Together is more fun! :)
#Bioconductor #ECCB2024 #SAiGENCI #WEHI_research
🌎👵⚤ Excited to share ->
Multi-organ map of the human immune system across age, sex and ethnicity
From 29M cells and 12K samples from @humancellatlas
, tissue-specific #Ageing programs, sexual #dimorphism, #Ethnical diversity in #Immunotherapy targets
biorxiv.org/content/10.1...
Multi-organ map of the human immune system across age, sex and ethnicity
From 29M cells and 12K samples from @humancellatlas
, tissue-specific #Ageing programs, sexual #dimorphism, #Ethnical diversity in #Immunotherapy targets
biorxiv.org/content/10.1...
April 29, 2024 at 6:24 AM
🌎👵⚤ Excited to share ->
Multi-organ map of the human immune system across age, sex and ethnicity
From 29M cells and 12K samples from @humancellatlas
, tissue-specific #Ageing programs, sexual #dimorphism, #Ethnical diversity in #Immunotherapy targets
biorxiv.org/content/10.1...
Multi-organ map of the human immune system across age, sex and ethnicity
From 29M cells and 12K samples from @humancellatlas
, tissue-specific #Ageing programs, sexual #dimorphism, #Ethnical diversity in #Immunotherapy targets
biorxiv.org/content/10.1...