📢 Just released 0.5.0 of SciCommander, a tool to automatically track provenance information about shell commands, into HTML reports with the full provenance graph for every output. This version brings much improved usability and better looks.
github.com/samuell/scic...
#provenance #bioinformatics

Our jobs are safe apparently 👀 #aifail #chatgpt

The @scikit-learn.org docs are such a nice overview of the common types of learning in classical machine learning! A great visual overview and guide for newcomers.
scikit-learn.org

Always nice when someone has not only cited you, but also actually read your paper 😊 Hat tip to the authors! 👍
doi.org/10.1016/j.co... #sciworkflows

"Pro tip": If you are in a restricted environment & need quick access to a linux terminal running locally in the browser for some #bioinformatics messing around - check the sandbox.bio terminal playground. Made a bitly link for for convenience: bit.ly/bioterminal

Having a blast at the #IMMEMXIV @escmid.bsky.social conference on microbial typing in Porto, Portugal. So much to learn as a newcomer in the field and so many knowledgeable people in the same place! #microsky

Yes, I am relieved to have finally finished the Coursera specialization in Genomic Data Science from Johns Hopkins Uni. Started this some 2.5 years ago and should have been finished *way* earlier. The problem? Got a job in the field before finishing it 😅
www.coursera.org/specializati...

I found I had a rage-written draft about why #Rstats is so confusing ... that actually had some good content in it, so I finished it up into a full blog post. Enjoy! 😊
livesys.se/posts/why-is...

📜New (and apparently first) post📜
1,5 years ago I pivoted into genomics from pharmaceutical bioinformatics.
Pulling off such a pivot besides a full-time job is not easy though so I'm here sharing my experiences and recommendations for anyone else wanting to do the switch! livesys.se/posts/learni...