skblab.bsky.social
@skblab.bsky.social
Thank you to @monashuniversity.bsky.social, @monashbiol.bsky.social, BDI & e_Research Monash and all collaborative Institutions for support. We enjoyed bringing this work out and we hope people like it. A big thank you to @nature.com for being considerate about APC in my funding climate! (10/10)
October 20, 2025 at 11:28 PM
Thank you also to my collaborators Sefi Rosenbluh (BDI Monash), Mauro D'Amato (LUM, Italy), Partha Das (BDI Monash), Yalong Guo (CAS, China), Alex Fournier-Level (Uni Melb), David Powell (e-Research, Monash) and Sridevi Sureshkumar (Biol, Monash) for their excellent support and contributions (9/10)
October 20, 2025 at 11:28 PM
Hearty congratulations/thanks to Craig Dent
@ciden13.bsky.social, Stefan Prodic, Aiswarya Balakrishnan, Aaryan Chhabra, James Georges, Sourav Mukherjee @souravbiotech.bsky.social, Jordyn Coutts @jordyncoutts.bsky.social , Michael Gitonobel & Rucha Sarwade for their contributions (8/10)
October 20, 2025 at 11:28 PM
Mutational impacts of known diseases could be explained based on the impacts of the hexamers as the example of CFTR gene in cystic fibrosis (7/10)
October 20, 2025 at 11:28 PM
There is a correlation in the rankings of the hexamers, which appear to reflect phylogenetic relationships arguing for a shared logic across eukaryotes (6/10)
October 20, 2025 at 11:28 PM
This pattern appears to hold true across eukaryotes and this shared logic of stronger hexamers being able to compete with weaker ones to determine splicing outcomes. The frequency at splice sites is correlated with with their strength rather than genomic prevalence (5/10)
October 20, 2025 at 11:28 PM
By carrying out 130000 GWAS along with millions of splice-site usage measures, we could infer that hexamer sequences surrounding the splice-sites form a rank order that could mostly explain the choices! By chaning hexamers, we could modify introns for desirable outcomes (4/10)
October 20, 2025 at 11:28 PM
Here, we used these quantifications to map genetic variation associated with splice-site usage in GWAS (SpliSER-GWAS), which really worked like magic (3/10)
October 20, 2025 at 11:28 PM
This works builds on our earlier work, where we described SpliSER, a method that allows accurate and empirical quantifications of splice-site usage as a method to analyse splicing (2/10)

academic.oup.com/nargab/artic...
Quantifying splice-site usage: a simple yet powerful approach to analyze splicing
Abstract. RNA splicing, and variations in this process referred to as alternative splicing, are critical aspects of gene regulation in eukaryotes. From env
academic.oup.com
October 20, 2025 at 11:28 PM
Reposted
Review: Dispersed components drive temperature sensing and response in plants
www.science.org/doi/10.1126/...
June 13, 2025 at 3:53 AM
Reposted
Avilash Yadav, Sridevi Sureshkumar, Alok Sinha & Suresh Balasubramanian review how plants integrate temperature sensing across signalling pathways and find the common themes in temperature sensing mechanisms
www.science.org/doi/10.1126/...
(5/8)
Dispersed components drive temperature sensing and response in plants
Plants are highly sensitive to temperature, and climate change is predicted to have negative impacts on agricultural productivity. Warming temperatures, coupled with a growing population, present a su...
www.science.org
June 13, 2025 at 9:14 AM
Great to see the Chinese abstract too!
May 6, 2025 at 7:19 AM