Melissa Wilson
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sexchrlab.bsky.social
Melissa Wilson
@sexchrlab.bsky.social
Geneticist. Parent. Studying sex chromosomes and sex as a biological variable in disease.

Posts and opinions are my own.
Some animals are more equal than others.
July 30, 2025 at 12:34 PM
Ooh, I love to hear it!
July 14, 2025 at 11:19 PM
Ooh, that's cool.

Is there a ref genome for the species?

Idk genome size, but if possible to generate long reads for the parents (not necessarily assemblies, but the cost has come down a lot) you can try to phase so you will have some haplotypes information to help with imputation of linked SNPs.
July 14, 2025 at 6:35 PM
Are the grandparents all inbred (homozygous at all/nearly all loci)?

I'm generally always more in favor of WGS over Radseq due to more even coverage across individuals, but curious what arguments there are in the opposite direction.
July 14, 2025 at 6:19 PM
Yes, I realized I responded thinking of a mouse model but the species and genetic background make a big difference.
July 14, 2025 at 6:16 PM
Highly recommend the wgs over radseq for more comparable sequence across individuals. Depending on the known parental genotypes, the imputation would work very well. Is this in mice with known parental genome sequences?
July 14, 2025 at 6:15 PM
Thank you :)
July 9, 2025 at 12:47 AM