Posts and opinions are my own.
Is there a ref genome for the species?
Idk genome size, but if possible to generate long reads for the parents (not necessarily assemblies, but the cost has come down a lot) you can try to phase so you will have some haplotypes information to help with imputation of linked SNPs.
Is there a ref genome for the species?
Idk genome size, but if possible to generate long reads for the parents (not necessarily assemblies, but the cost has come down a lot) you can try to phase so you will have some haplotypes information to help with imputation of linked SNPs.
I'm generally always more in favor of WGS over Radseq due to more even coverage across individuals, but curious what arguments there are in the opposite direction.
I'm generally always more in favor of WGS over Radseq due to more even coverage across individuals, but curious what arguments there are in the opposite direction.