Sarah Bagby
@scbagby.bsky.social
Environmental microbiologist at Case Western. She/her. https://bagby-lab.github.io/, https://emerge-bii.github.io/
For myself, Emacs org-mode, always. For my group, the goal is GitHub task lists in private repos; right now it's a mix of that and Slack. For wider collaborations, Basecamp and a whole lot more Google docs than I would like. The best tool is the one people are willing to use to get the job done.
November 22, 2024 at 1:30 PM
For myself, Emacs org-mode, always. For my group, the goal is GitHub task lists in private repos; right now it's a mix of that and Slack. For wider collaborations, Basecamp and a whole lot more Google docs than I would like. The best tool is the one people are willing to use to get the job done.
look at this absolute grob
November 19, 2024 at 11:34 PM
look at this absolute grob
Reposted by Sarah Bagby
Shameless plug: a post on 'writing as thinking' that I wrote for my own students
hackingsemantics.xyz/2024/writing/
hackingsemantics.xyz/2024/writing/
On AI-assisted writing in graduate school
What is the proper role of AI ‘assistance’ in graduate student writing? It depends on what you mean by ‘graduate’.
hackingsemantics.xyz
November 15, 2024 at 10:07 AM
Shameless plug: a post on 'writing as thinking' that I wrote for my own students
hackingsemantics.xyz/2024/writing/
hackingsemantics.xyz/2024/writing/
FWIW, we've switched over to CheckM2 (reduces bias against small genomes), and our are-these-bugs-the-same step is usually dereplication with dRep or galah. But I'd agree with the above---"good enough" depends on what you need it for; there's lots to learn even from fragmented assemblies.
November 14, 2024 at 8:17 PM
FWIW, we've switched over to CheckM2 (reduces bias against small genomes), and our are-these-bugs-the-same step is usually dereplication with dRep or galah. But I'd agree with the above---"good enough" depends on what you need it for; there's lots to learn even from fragmented assemblies.
A few days left to apply! #ProtistsOnSky
November 12, 2024 at 4:31 PM
A few days left to apply! #ProtistsOnSky