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Lab leak - pro or con
**Here I have compiled a point-by-point list of the arguments for and against the lab leak hypothesis(es).** Sources and explanations can be found in the full blog post, but this may be easier to read if you don't feel like reading any more. I also address Sigrid Bratlie's own hypothesis about what happened and review all ten of her points. ### Arguments against lab leak and for zoonosis **What are the arguments against the lab leak hypothesis?** 1. There is no evidence that there were ever sick employees at the Wuhan lab. 2. There is strong evidence that there were two separate animal-to-human transmissions, the so-called A and B lineages. This is not compatible with a lab leak. 3. The spread pattern of early infections based on many different sources and analyses all show a cluster around the Huanan wet market in Wuhan. 4. Environmental samples from the wet market show that the SARS2 virus was present there, with exactly the genetic variation expected from the earliest variants. Most positive samples were also from the part of the market where the relevant animal species were kept captive. 5. Blood bank analyses of 40,000 blood samples from Chinese hospitals collected in autumn 2019 and early 2020 in Wuhan found no infected individuals before December 2019. This is a classic example of conspiratorial reasoning, because these samples were demanded by lab leak supporters who claimed that the Chinese had to release them in the hope that they would show infection earlier in the autumn, which could coincide with their claims about lockdowns, infected soldiers, infected employees, etc. from September and October 2019. But when the data was released and showed that there was no infection before December, it was no longer mentioned. It doesn't fit their preferred hypothesis, so we keep quiet about it. The same goes for Bratlie, who never mentions this in her book. But then again, she only trusts Chinese data when it supports her hypothesis... 6. The super-spreader hypothesis also assumes that two infected laboratory employees, independently of each other, went straight from the WIV to the wet market, perhaps a week apart. Without infecting any of their colleagues. Without infecting anyone in their families. Without infecting friends. Without infecting anyone on the bus or train. Without infecting anyone at the store where they shop. But they both infect people at the wet market, and only there. They then go home again. Again without infecting anyone else. They go to work without symptoms. Every day for a couple of weeks. And then suddenly a superspreader event occurs at the wet market. Likely? Nope. 7. There is still no evidence that WIV had viruses similar enough to have been the “strain” of SARS2. The closest virus identified there is RaTG13, which is only about 96% similar, and everyone agrees that it therefore cannot have been used to create SARS-CoV-2. That would require a virus that is more than 99% similar. The closest virus found in nature is some variants of the BANAL viruses in Laos, but even these are not similar enough to be used as a strain to create SARS2. We know this because overviews of the viruses they were researching at the WIV were published several times, including in 2018 when they published a list of all the viruses they had. Only ten of them were sarbekoviruses, and none of them were close to SARS2. The DEFUSE application also listed 180 coronaviruses, and a study submitted for publication in 2019 listed 200 coronaviruses in the collection, without describing any virus resembling SARS2. And remember, before the pandemic, there was no reason for them to keep such a virus hidden. DEFUSE (which was never funded and therefore unlikely to have been carried out) also based its application on the use of the WIV1 virus, which is only 80% similar to SARS2 and therefore cannot have been the source. 8. No signs of genetic manipulation of the SARS2 virus. The furin cleavage site is inserted “out-of-frame” and is not a very ‘good’ furin cleavage site. Researchers would not have “inserted” such a suboptimal furin cleavage site. They would have used an existing furin cleavage site that they knew was effective, as has been done in previous experiments, rather than creating something completely new that they had no idea would work. And simply inserting a furin cleavage site is not enough in itself, because the SARS2 furin cleavage site has properties that optimize transmission that we did not know about before 2020. (I write about all this in more detail in a previous blog post.) 9. Two of the three species in which SARS1 was found, raccoon dogs and civets, were found in wet markets, which is where most positive environmental samples of SARS2 were found. It is worth mentioning that earlier in 2019, three market stalls were fined by the Chinese authorities for illegally selling animals. Two of these stalls tested positive for SARS2. Coincidence? 10. An unexpectedly large proportion of the very first cases of infection recorded even _before_ the wet market came under suspicion were nevertheless linked to the wet market. As these cases were recorded before the wet market was suspected, this cannot be the result of confirmation bias. 11. In samples from other markets in Wuhan, almost no positive environmental samples with SARS2 were found. This makes no sense if it was humans who brought the infection to the markets, rather than it coming from animals there. Only at the Huanan wet market were there massive positive traces of SARS2. We also know the number of samples taken and that most positive samples were found in the southwestern corner where civets, palm civets, and bamboo rats were kept in cages. Ergo, this pattern cannot be due to “sampling bias.” Incidentally, some positive samples were also found in warehouses that supplied the wet market with animals, which is also a fairly clear indication of a link between SARS2 and the animals in question as intermediate hosts. 12. SARS2 is a recombinant virus, and all the building blocks required have already been found in nature in various coronaviruses. It is highly plausible that SARS2 emerged from among the billions of virus experiments through random recombination that occur in billions of viruses in billions of animals every single day. It is significantly more plausible than them having stumbled upon this perfect combination of the furin cleavage site, the receptor binding domain and the other components that required knowledge that was not available in 2019, purely by chance, within a few months of research on a few generations of viruses. 13. A virus cultivated in a laboratory in, for example, humanized mice would not be particularly infectious in humans from the outset. It would, however, be highly infectious in mice, but that was not the Wuhan variant of SARS2. 14. No evidence of mysterious events in Wuhan in the fall of 2019. 15. No WIV employees reported infection, mysterious illness, or anything else unusual happening there in the fall of 2019. 16. No documented COVID-19 cases in Wuhan before December 2019. 17. Historical precedent that the same animals as at the seafood market, at the same distances, with the same source (bats) have given us coronavirus outbreaks in humans in the past (SARS1/MERS). 18. No evidence of dangerous safety conditions at WIV. 19. No timeline or hypothesis for a lab leak has been presented that does not contradict scientific evidence or is internally inconsistent. 20. No evidence that the six miners who fell ill in the Mojiang mine in 2012 had SARS2. Analyses suggest that this was not the case. 21. SARS2 could infect humans, but was not optimized for human infection. The furin cleavage site could have been better, and it became more infectious and more dangerous after further evolution later in the pandemic. 22. Based on what we know about the World Military Games, this cannot have been a superspreader event in October 2019. 23. A majority of US intelligence agencies believe zoonosis is most likely, and they all agree that the virus does not show signs of genetic manipulation and that there is no evidence of GoF research at the WIV. 24. The three WIV employees who were allegedly ill in November 2019 do not fit Bratlie's timeline (virus database taken down in September, World Military Games and mysterious events in October), and they deny having been ill. They did not even work on live virus research, some had symptoms that did not match COVID-19, and tested negative for SARS2 in January 2020. 25. Criticism of the key studies arguing for the wet market as the epicenter only criticizes a couple of isolated analyses and does not find that an epicenter was more likely to be closer to the WIV or far away from the wet market. 26. Previous lab leaks have shown clear links between infection and the laboratory, and have not involved new viruses, only known viruses that could infect humans. 27. SARS2 looks like “a jigsaw puzzle”, which is exactly what you would expect from a recombinant sarbecovirus. There are no signs of genetic manipulation, quite the contrary. 28. The reproduction rate inside and outside the wet market suggests that there was no superspreader event there, but that the infection originated there. 29. Both similar furin cleavage sites and almost identical RBDs are found in other coronaviruses in nature. * * * ### Arguments for lab leak After reading the book, some reviewers have become more convinced that a lab leak is likely. I did not. On the contrary, it became even clearer to me how this hypothesis has no coherent, plausible narrative to stand on, but also how dishonest the argumentation is, and how extremely many “what if” arguments it is based on. Is there anything that makes me still consider the lab leak hypothesis plausible? **Well, here are the points that I believe still prevent zoonosis from being 100% certain:** 1. We have not found either the source of SARS2, i.e. the natural reservoir, or the intermediate hosts. Until we find this, lab leak can never be ruled out with 100% certainty. And even if we find them, there is always a small possibility that lab leak was the cause. But remember that we were not expected to have found these yet. Historically, we know that it can take a very long time, so the lack of these does not argue for a lab leak either. 2. The hearings in the US revealed that there was probably not full transparency about what kind of research was going on at the WIV. However, there is no evidence that the virus was created in a laboratory, given that no virus candidate that could have been used as a virus strain has been found, but this does not completely rule out the possibility that research that could in theory have created SARS-2 took place there. But again, the pattern of infection spreading from the seafood market, the lack of evidence of infection cases at the lab, no signs that anyone there knew of any infection incidents, published virus overviews that show no similar virus in the WIV before 2019, etc., nevertheless significantly weaken this point. 3. Researcher Yusen Zhou, who had collaborated with Shi Zhengli on vaccine research, applied for a patent for a COVID vaccine in February 2020. Bratlie writes that it was the “very first vaccine,” which is not true, but it is still early. Others had applied for patents for vaccines before him, but he was the only one who had conducted such extensive animal studies as he described. Some experts believe that it would have taken at least 3-4 months to complete these studies, so he must have known about SARS2 by November 2019 at the latest, several weeks before the virus was sequenced and publicly described. At the same time, he was one of the leading experts in the world on this, with extensive experience with this type of virus, so others believe that it is not entirely unlikely that he could have achieved this in just a few weeks, assuming that all the experiments went according to plan. However, most experts do not seem to attach much importance to this, because it can be explained naturally. These are the only three points that remain for me after reading the book that open up the possibility of a lab leak. None of them carry much weight as evidence of a lab leak, but they mean that a lab leak still cannot be ruled out, even though I believe that the evidence for zoonosis makes me at least 90% certain that this is the correct scenario. * * * ### Bratlie's hypothesis Towards the end of the book, Sigrid Bratlie presents her own hypothesis about what caused the pandemic. Here is a review of it, where her points are summarized/paraphrased in highlighted text, with brief comments under each point: 1. **Zhengli Shi and Peter Daszak found a virus in the Mojiang mine that they named BtCov/4991.** True. 2. **Miners in Mojiang fell ill and half died from what may have been COVID. They used the virus they found there to insert a furin cleavage site in research at the WIV in order to create vaccines against such a potential virus, which enabled Yusen Zhou to be so early with vaccine patents.** The problem with this is that the miners were unlikely to have been sick from a virus, but rather from mold. And if it was a virus, there is no evidence that it was anything that could have been SARS2. There is no evidence that WIV had any virus more closely related to SARS2 than RaTG13, which is not similar enough to be used. 3. **An infection accident occurred at the WIV, and measures were taken to limit the damage in October 2019.** There is no evidence for this. There are no plausible signs that anything special happened at the WIV in October 2019. And if something like that did happen, it conflicts with Bratlie's claims of infection in Europe much earlier. 4. **The first cases of infection showed no symptoms or mild illness, and more serious cases were interpreted as influenza and went under the radar.** This conflicts with the claim that the virus originated in the Mojiang mine, because there the virus was 50% fatal. Did they do RoF research - _Reduction of Function_? Why then does Bratlie write so much about GoF? 5. **The World Military Games in Wuhan in October 2019 were a super-spreader event that spread the infection to other parts of the world.** No data supports this. On the contrary, there is no evidence that participants there started any epidemics in their home countries. Virus analyses also do not support this argument. 6. **The virus evolved further, first to the A lineage, which later became the B lineage. A person infected with the B lineage went to the Huanan wet market and started the pandemic.** Genetic analyses argue against B evolving from A in humans. They appear to have jumped from animals to humans in two separate events, both in wet markets. This point also contradicts one of her central claims that the virus was so well adapted to humans from the outset. Here, however, she writes that the virus evolved in humans for almost two months before it was potent enough to start a pandemic. This contradicts the idea of a virus genetically modified to be particularly infectious in humans. We also know that the wet market was not a super-spreader event, and it is extremely unlikely that the pandemic would have started there – of all places in Wuhan – if it had been brought to the market by a human. 7. **Once the infection was discovered, testing was concentrated around the market, which led to a skewed picture of the spread of infection. The Chinese authorities removed the animals and took down the virus database.** The virus database was taken down in September, so that point strongly argues against measures to conceal the infection only being implemented after the infection was discovered in December. It is also incorrect that data was primarily collected on patients with links to the market. Analyses where all these have been removed still show an epicenter at the seafood market. And there is patient data from before this link to the seafood market was suspected, and it also points to the seafood market. 8. **The Chinese were slow to alert the world, but when the virus genome was published in January 2020, researchers discovered that it appeared to have been genetically manipulated. It also appeared to be well adapted to human infection.** Again, this contradicts her argument that the virus had already been circulating for a long time in humans, with ample opportunity to adapt. We also know that the virus became much more contagious in humans only later in 2020, so it was by no means optimized for humans. Bratlie herself says that the virus spread to other countries in early fall 2019, but none of these cases led to infection in others, which also argues against it being so well adapted to humans. The reason researchers suspected genetic manipulation was that it had an RBD adapted to humans and a furin cleavage site. After a short time, it was found that both of these already exist in similar viruses in nature, and the idea that only genetic manipulation could have created such a virus was therefore abandoned. 9. **Shi Zhengli tried to cover up anything that could point to her as the creator of the virus. Bratlie does not believe that the published genome of RaTG13 is correct and believes that Shi has manipulated data to hide the fact that it may have been used as a virus strain for SARS2.** There is no evidence for any of this. It is just speculation based on rumors and data that is misrepresented throughout the book. 10. **Key researchers such as Kristian Andersen and Ralph Baric warned the authorities and the research community that this could be a lab leak, but it could cause so much trouble that they all got together to cover up this conclusion and lie about what the data showed.** There is no evidence for any of this. It is just speculation based on rumors and data that is misrepresented throughout the book. 11.
tjomlid.com
June 11, 2025 at 10:54 PM
Why SARS-CoV-2 appears to have a natural origin
**After****my previous blog post****about lab leaks, there was some debate, as expected. I learn from that, but while the previous blog post focused on the arguments from the Langsikt memo, here I will focus more on the scientific arguments for why SARS-CoV-2 was most likely not created at the Wuhan Institute of Virology (WIV).** This is quite demanding material, and I am no virologist, molecular biologist or anything close to it. But I have read a lot and tried to find out what made leading virologists believe quite early on that a lab leak as the origin of SARS-CoV-2 was unlikely, and why that conclusion has been strengthened over time. There is a lot of material to cover, but I have tried to pick out the points I think are most important, and I have included links to further reading at the bottom of the blog post for those who want to delve deeper. I also recommend watching the videos I have included in the blog post. Should any of what I have written be incorrect, in the form of “misunderstood” or poorly explained biology/genetics, I hope that competent people will correct me so that I can improve the text. ### Furin Cleavage Site One of the important factors that makes SARS-CoV-2 (SARS2) look “man-made” is that it has a **Furin Cleavage Site** (FCS) that has not been seen in other coronaviruses in the SARS family (the _sarbecovirus_ subgroup of the betacoronavirus genus, of which there are around 1500 variants). It seems mysterious. How could this have appeared suddenly in 2019? Photo by CDC on Unsplash Most people have seen images of the SARS2 virus as a ball with spikes on it. These spikes are proteins necessary for infecting human cells and consist of two parts, called S1 and S2. Once the virus has attached itself to an ACE2 receptor on the surface of a human cell using S1, S1 and S2 must be split apart so that S2 can perform the actual “connection” to the cell, allowing the virus to enter the cell and replicate there. This splitting occurs with the help of the enzyme _furin_ (which acts as a kind of biological scissors), and the place where this “cut” occurs is called a _Furin Cleavage Site_. ### Could an FCS have been created at the Wuhan Institute of Virology (WIV)? We know that research has been done on inserting an FCS into coronaviruses through genetic modification in the past, as described in a handful of studies. And we know that the DEFUSE project described this as one of its objectives. Here, they wanted to take an existing virus, a so-called “backbone,” and make minor genetic changes to it to see what effects it would have on the virus's transmissibility and pathogenicity in animals and humans. However, DEFUSE did not receive funding from DARPA, partly due to fears of “gain-of-function” research. This is research that makes an existing virus more dangerous to humans. To the extent that such research was nevertheless carried out with other financial resources from the NIH, the project description states that the role of the WIV was only to collect coronaviruses, while the actual FCS work was to be done at the University of North Carolina (UNC) in the US (under the leadership of Ralph Baric). WIV does not have the specialist expertise in this field, which UNC does, so it seems strange that this would have happened at WIV. At the same time, we know that research was conducted on hybrid viruses based on a coronavirus called WIV1 in mouse studies there, so related research was probably carried out in Wuhan. However, there is no evidence that WIV ever worked on manipulating specific FCS into a coronavirus that was similar enough to SARS2 to have created this. To manipulate an FCS and create SARS2, you need a virus that is very similar to start with. This was not available at WIV or anywhere else. The closest known virus in 2019 was the bat virus RaTG13, but it is too different from SARS2 to have been used for this purpose, as it differs by more than 1,100 base pairs from SARS2. It was only after the outbreak of the pandemic that other coronaviruses more similar to SARS2 were found, such as RmYN02, RpYN06, and PrC31. However, the closest match so far is BANAL-20-52, which was found in bats in Laos a couple of years _after_ the start of the pandemic. This virus is so similar (it differs from SARS2 by about 10-20 years of natural evolution), especially in the areas of the virus that are central to infecting humans, that it could potentially have been the starting point for SARS2 by adding an FCS. But WIV did not have BANAL-20-52 – or any other similar virus – at the time, so they could not have done so. ### Did WIV keep virus data hidden? Or had they found BANAL-20-52 or a similar virus but kept it hidden? That makes no sense, because BANAL-20-52 was not a special virus before SARS2 was discovered, so why would you keep what was then a completely insignificant virus hidden from the public? On the other hand, it doesn't take many mutations to turn BANAL-20-52 into SARS-CoV-2, so that increases the likelihood of natural recombination and the formation of an FCS in nature, which I will come back to later. The WIV collected viruses from bats several times between 2011 and 2015 from a single habitat near Kunming City, Yunnan Province, China. All information about this was published in a database that contained an overview of all 22,000 viruses and genetic sequences from various virus collections from previous years, last updated in the summer of 2019. Eddie Holmes has also repeatedly mentioned and described in a now unavailable Twitter thread (as he later left Twitter) a manuscript that researchers at WIV submitted for publication in 2018 but which was rejected for technical reasons. It was later discovered that they had mentioned the latest viruses sequenced at the laboratory. None of these were genetically close to SARS2 and could not have been used as the backbone to create SARS2. Another article was published in 2020 listing all the SARS viruses the laboratory had. Since this article was submitted for publication as early as 2019, long before there would be any reason to keep a SARS2-like virus secret, this is further evidence that the WIV did not have any SARS2-like virus that could have been used as a backbone to create SARS2. US intelligence services have also concluded that the WIV did not have any virus that could have been used to create SARS2. Then, on September 12, 2019, this database went offline, which has given rise to conspiracy theories that this was done to hide something. This theory fails to mention that the database was constantly unavailable both before and after this date: Access was very unstable long before September 12, 2019, then stable for a short period before going offline. It then came back towards the end of the year, was unstable, before disappearing again at the end of February 2020. The official explanation was that the database was subjected to hacking attempts and was therefore taken down, but we do not know if this is the whole truth. Perhaps it was taken down because a laboratory accident had infected a researcher there with SARS2? ### Were researchers at WIV infected with SARS2 in the fall of 2019? It doesn't really make sense, because there is no evidence that any researchers at the WIV were infected with COVID-19 that early (the rumors about hospitalized laboratory employees don't hold water), as described in the previous blog post. And if they had been, it would not be consistent with the infection figures in December. SARS2 infections doubled every 3.5 days in the beginning. With such exponential growth, an outbreak in August/September would have meant that millions of Chinese would have been infected by December, with overburdened hospitals and a very visible epidemic throughout the fall. However, the first known case of infection was in early December, when very few people were infected. Ergo, the outbreak cannot have started before early November at the earliest, otherwise the math does not add up. A so-called superspreader event at the seafood market could also be an explanation. Perhaps some people were already infected earlier in the fall, perhaps someone at the laboratory, and it was only when they later visited the seafood market that they started an outbreak? However, the serological and epidemiological findings do not support this hypothesis. This now infamous wet market in Wuhan is not very densely populated. There are more than 1,500 areas in the metropolis, which has around 12 million inhabitants, where there would be a much greater chance of a virus outbreak than at the wet market, such as train stations and shopping malls. What sets the Huanan wet market apart from other much more densely populated places in the city is that it had animals in captivity that we know can carry SARS2. If we look at the geography, there are also many such densely populated hubs closer to the WIV than the Huanan wet market. So if the infection started with a laboratory worker who later infected others, it is statistically unlikely that it would have happened at a wet market located half an hour's drive away from the WIV. So the fact that we see the infection spreading from the market, and that the market was proven to have live animals of species (civets and raccoon dogs1) that we know can carry SARS2, is a strong indication that the virus also originated there. If not, a “superspreader event” from an already infected person would have been much more likely to occur somewhere else entirely. ### WIV, wet markets and geography We also have clear signs that the infection started with two different lineages of SARS2, namely lineage A and B. According to the molecular clock, these two lineages split in late November or very early December 2019. The lineage B variant was found in about 2/3 of all infected people at the start of the pandemic, and the lineage A variant in about 1/3. Mathematically, this means that with a doubling of infections every 3.5 days, variant B should have infected a human at least 3-4 days before variant A. This is the most likely reason why twice as many people were found to be infected with variant B afterwards. It also means that there must have been several cases of transmission from animals to humans inside the market, both with lineage A and lineage B (and perhaps others that never spread further and which we have therefore not seen), over several days. Why is this important? Because serological tests have found traces of both lineage A and B inside the wet market, which also makes it highly unlikely that the infection started there via a human from outside. That would require a laboratory employee, who could only have been infected with lineage A, to have infected enough other people (or animals) for lineage B to develop, and then both of these would have had to visit the wet market and infect people (or animals) there. Without infecting people anywhere else other than the wet market first. It makes no sense. The statistical chance of finding both lines in and right next to the seafood market if they did not originate there is very low. If it was a laboratory employee who was first infected, that person would not have been able to infect anyone at the seafood market (or elsewhere) with two different variants of the virus several days apart. However, animals in cages at the wet market with the different variants could have exposed humans to infection repeatedly over several days, thereby creating the kind of spread that the data subsequently corroborates. In terms of timing, this hypothesis does not hold water either. If the WIV had BANAL-20-52 or a similar virus and wanted to keep it hidden, this virus would have had to be discovered after August 2019. But that means that in just three months, they would have had to find the virus, identify and catalogue it, sequence the genome, manipulate it into an FCS (without particular expertise in this area), cultivate enough virus in laboratory mice (without leaving any visible traces in the genome afterwards), and then accidentally infect someone in such a short period of time. This is not practically possible. Two of the first three known cases could be linked directly to the wet market, and 28% of all cases detected in December 2019 were also linked to the wet market. A full 55% of all cases detected in December 2019 had a connection to the wet market in Huanan or similar markets. Analyses of infected cases show that they clearly originate from the wet market, and to the extent that this is due to a testing bias, where more people from that area were tested for COVID-19, the same pattern was seen with deaths from “pneumonia” in early January. Furthermore, no such clusters of infection have been found in other parts of Wuhan, including the WIV. It makes no sense that all the different types of analysis, whether it is mapping of early infections, data on excess mortality, data from mobile apps, etc., all point to the Huanan wet market as the epicenter, while none point to any other place, such as the WIV, unless the wet market was actually the epicenter. ### Genetic traces show natural evolution If the infection came from a researcher at the WIV, then SARS2 would also have shown signs of adaptations to laboratory mice, which has not been found. If the infection came from a researcher at the WIV, SARS2 would also have shown signs of adaptation to laboratory mice, which no traces of have been found. In addition, it would be difficult or impossible to cultivate SARS coronaviruses with FCS in mice, as FCS does not provide any evolutionary advantage there and would therefore have been naturally selected away. To cultivate such viruses, it would have had to occur in human lung cells or animals genetically modified to have ACE2 receptors, e.g. humanized mice, but then the virus would also have been adapted to infection in mice, including a specific mutation in the spike protein called N501Y. However, the earliest variants of SARS2 could not infect wild mice and lacked mutations similar to N501Y. This also points to the fact that the virus could not have come from infected laboratory mice. In addition, the way FCS is found in the SARS2 genome is completely different from the way FCS has been “pushed into” coronaviruses in all previous attempts. DNA is made up of the following four nucleotides: Adenine (A), Guanine (G), Cytosine (C) and Thymine (T), while RNA is made up of Adenine (A), Guanine (G), Cytosine (C) and Uracil (U). These form long chains that we know as DNA and RNA molecules. A set of three nucleotides, e.g. CGG or ACG, is called a codon, and a series of three codons codes for an amino acid. As previously explained, the spike protein on the SARS2 virus must be cut using the enzyme furin in FCS, which consists of 12 codons, or four amino acids, in the RNA of the virus. Furin reacts with the protein where it sees the amino acid sequence RxxR, where R is the amino acid _arginine_ , and x is one of the other 19 amino acids that all our proteins are made up of. Furin works best if it sees RRxR or RxRR, and best of all at RRKR. In SARS2's FCS, the amino acid sequence is RRAR. Of the seven different coronaviruses that infect humans, four of them have FCS, including some that cause the common cold, as well as the more deadly MERS. (SARS1 does not have FCS.) FCS is also found in many other coronaviruses, although (as yet) not in the specific subgroup to which SARS2 belongs (other than in SARS2 itself). Comparing the SARS2 virus with RaTG13, one finds many similarities, apart from this PRRA sequence, which is new and which many found suspicious in early 2020. But as mentioned earlier, each amino acid consists of three codons. Different combinations of codons can code for the same amino acid. And when you look at SARS2, you see something strange: The inserted sequence PRRA is not in the “right place”. The amino acid sequence PRRA is shifted by one letter/nucleotide. It is “out-of-frame”, i.e. not placed in a natural position in the sequence of nucleotides. It starts in the wrong place. It is unlikely that a human being who wanted to splice the amino acid sequence PRRA into a genetic backbone (existing virus) would have done so in this way, because it has no specific utility and only increases the risk that the virus will not “work” afterwards. This clearly points to a natural mutation. In addition, I mentioned that PRRA is not FCS in itself. It consists of RRAR, i.e. the last three amino acids in (P)RRA plus a subsequent R that was there before. The sequence is therefore (P)RRAR, as you can see from the image above. So why would researchers want to insert a P at the beginning when it is unnecessary? The virus already had an R at the end, so all they needed to do was add RRA in front, which would have given us RRAR – an FCS. Peter Miller, the author of this blog post, from which I have drawn much of my information and which you should definitely read in its entirety, has looked at previous studies where an FCS has been created in viruses and summarizes the findings as follows: * A 2006 US study inserted RRSRR into the S1-S2 site in a SARS-CoV-1 pseudovirus. * A 2009 US study inserted RRSRR into the S1-S2 and S2’ site in a SARS-CoV-1 pseudovirus. * A 2008 Japanese study inserted KRRKR into S2’ site in a SARS-CoV-1 pseudovirus. * A 2014 Dutch study inserted RRRRR into S2’ in a mouse hepatitis coronavirus (pseudovirus). * A 2019 Chinese study inserted RRKR into S2’ in a chicken virus (gamma-CoV infectious bronchitis virus). There are no published data or evidence that WIV has ever attempted this, and in general it has not been attempted very often at all. We also know that such research normally takes place with “safe pseudoviruses,” e.g., WIV1 and similar, not viruses that can infect humans. In this context, it would have been natural to research the SARS1 virus, which does not have FCS, and add an FCS there to see the effect. But SARS1 is far too different from SARS2 to have been the backbone they used. Traditionally, they have also always used very effective variants of FCS such as RRKR or RRSRR. Variants of RxxR where x is P and A have never been tried, simply because they would be less effective FCS. PRRAR, as we see in SARS2, gives a significantly poorer FCS than already known sequences that have been used successfully before. Why then would researchers at WIV use a weaker/poorer variant? It makes little sense other than if it was a natural mutation where such considerations are not taken into account. And since 2019, several viruses have been found with natural mutations in the same place as SARS2 has PRRAR in its genome: As you can see, all of these have a P first and an A at the end. There is therefore a natural precedent for this to happen, but no precedent for humans doing it this way. ### More about codons and coincidences As mentioned, each amino acid is made up of three codons, but different combinations of these can produce the same amino acid. P (the amino acid proline) can, for example, be coded as CCT, CCC, CCA, or CCG. What we also see is that P in both SARS2 and the other four natural viruses above is coded as CCT. In other words, we see that SARS2 has coded for proline using the same nucleotide sequence (codon) as other natural coronaviruses, even though there are several other possibilities. This also points to FCS being the result of a natural recombination between two natural coronaviruses. Evolution has also improved the efficiency of the virus and gradually replaced P with other amino acids that work better. While the original Wuhan variant of SARS2 had the amino acid sequence PRRAR in its FCS, the Alpha variant has HRRAR, and the Delta variant has RRRAR, which made them more contagious and pathogenic. If one were to optimize a virus for human infection in a laboratory, it would be strange to splice in an “out-of-frame” FCS with an amino acid sequence that has never been tested before and that we know is less effective than others that have been tested before. Let me quote from another article on this subject, in which Miller participated in a debate on lab leaks vs. natural origin, where he says: > COVID’s furin cleavage site is a mess. When humans are inserting furin cleavage sites into viruses for gain-of-function, the standard practice is RRKR, a very nice and simple furin cleavage site which works well. > > COVID uses PRRAR, a bizarre furin cleavage site which no human has ever used before, and which virologists expected to work poorly. > > They later found that an adjacent part of COVID’s genome twisted the protein in an unusual way that allowed PRRAR to be a viable furin cleavage site, but this discovery took a lot of computer power, and was only made after COVID became important. > > The Wuhan virologists supposedly doing gain-of-function research on COVID shouldn’t have known this would work. Why didn’t they just use the standard RRKR site, which would have worked better? Everyone thinks it works better! Even the virus eventually decided it worked better - sometime during the course of the pandemic, it mutated away from its weird PRRAR furin cleavage site towards a more normal form. Or from this article written by some of the leading virologists in the field explaining the same problem: > The SARS-CoV-2 furin cleavage site (containing the amino acid motif RRAR) does not match its canonical form (R-X-R/K-R), is suboptimal compared to those of HCoV-HKU1 and HCoV-OC43, lacks either a P1 or P2 arginine (depending on the alignment), and was caused by an out-of-frame insertion (Figure 2). The RRAR and RRSR S1/S2 cleavage sites in feline coronaviruses (FCoV) and cell-culture adapted HCoV-OC43, respectively, are not cleaved by furin (de Haan et al., 2008). There is no logical reason why an engineered virus would utilize such a suboptimal furin cleavage site, which would entail such an unusual and needlessly complex feat of genetic engineering. The only previous studies of artificial insertion of a furin cleavage site at the S1/S2 boundary in the SARS-CoV spike protein utilized an optimal “RRSRR” sequence in pseudotype systems (Belouzard et al., 2009;Follis et al., 2006). Further, there is no evidence of prior research at the WIV involving the artificial insertion of complete furin cleavage sites into coronaviruses. ### What about ENaC α? Some would point out that this may not be so mysterious after all, because a similar amino acid sequence is found in a protein on human cells called ENaC α, which is “ _a critical component of the epithelial sodium channel_ ” and “ _is critical for the channel's ability to transport sodium ions across epithelial cell membranes_.” This is found in cells in our kidneys, colon, and lungs, among other places. ENaC α also has a functioning FCS, and since this is well known, it would be obvious to “graft” this into a coronavirus if one wanted to make it more infectious to humans. Both ENaC α and SARS2's FCS have the amino acid sequence RRAR`SVAS, which may seem suspicious. Is it purely coincidental that SARS2 has an FCS identical to that found in humans? Doesn't this suggest that someone at WIV may have taken the FCS from ENaC α and “spliced” it into a secret SARS2-like virus to create SARS2? Not really. The amino acid arginine, R in the sequence PRRAR, can be coded as CGT, CGC, CGA, CGG, AGA, or AGG. In SARS2, the amino acid sequence RR is coded as CGG CGG, while in ENaC α it is not. There are therefore major differences in the coding of FCS between SARS2 and ENaC α, making it unlikely that FCS from human ENaC α was used to modify the SARS2 precursor, especially since this slightly unusual CGG coding for arginine also occurs naturally in other coronaviruses. R (arginine) is spelled CGG in 20% of human DNA. And coincidentally also in 20% of bat DNA. Therefore, it may be a natural evolution away from RR spelled CGG CGG, as our immune system can more easily recognize it as viral DNA. Nevertheless, CGG CGG has not changed in SARS2 even after a long period of evolution in humans. It appears to be very useful in SARS2, and when attempts have been made to replace it with, for example, AGG, the virus becomes less effective. Researchers could not have known this before the pandemic, so if they chose to create an FCS by grafting PRRA out-of-frame in a way where they spelled both R's as CGG, it would be an incredible coincidence and stroke of luck. And spelling arginine as CGG is not a common way of doing it in previous attempts to create an FCS in viruses. All of this therefore argues against human intervention, something even lab leak proponents such as Alina Chang admit. This reduces the likelihood that ENaC α's FCS would have “inspired” a similar FCS in SARS2, especially since the sequence R´SVAS is found in, for example, BANAL-20-52 and other SARS coronaviruses. ### But what about DEFUSE? It may still seem suspicious that finding a sarbeco coronavirus with an FCS “by chance” would be exactly what the DEFUSE project described as its goal. But that argument only holds if you overlook the details. In the description of the DEFUSE project, they wanted to try to create an FCS in S2, not in the S1/S2 region, as we see in SARS2. They also wanted to grow the modified virus in Vero cells, which are a cell line from monkey kidneys. However, later experiments with this have shown that FCS is selected away through natural evolution and thus disappears from the virus over time. If they therefore worked at WIV in line with the DEFUSE project description, the virus would look different – and would not exist with an FCS today. The virus was also not particularly well adapted to humans. It can infect a variety of species and even exist as reservoirs in species without contact with humans. Since December 2019, it has also rapidly adapted to humans, as new mutations were found in January 2020 that made the virus more contagious in humans. If the virus had been infecting humans for many months already, as some lab leak proponents argue, it would probably have been better adapted to humans, with visible mutations from earlier stages, when it finally became a major outbreak. ### Research and time travel On top of this, the cleavage site in SARS2 has O-linked glycans (sugar molecules attached to the amino acids serine or threonine). These affect how furin and other proteases can cleave the spike protein and are central to the infectivity of SARS2. However, this was not discovered until long after the start of the pandemic, so no researchers at WIV could have taken this into account if they were to construct an FCS synthetically. Another problem with FCS in SARS2 is that it is found in the genome in a completely different way than one would expect if it were artificially produced. In laboratories, existing sequences are usually altered through point mutations. It is rare to add completely new nucleotide sequences to create FCS, as seen in SARS2. Adding new nucleotide sequences only massively increases the risk that something will go wrong and that the experiment will fail. Mutating existing genetic code is a much safer and more common way of doing this. However, this is not what we see in SARS2. However, in nature, we have seen several times that viruses can get unexpected insertions of 12 or more nucleotides. And in HKU1, for example, another Chinese coronavirus discovered in 2004 that caused a small outbreak of pneumonia/colds, an insertion of 15 nucleotides was found right next to the virus's FCS. In later variants of SARS2, as well as some influenza viruses, several such random insertions of 12-15 nucleotides have also been seen through random mutations. In 2023, it was even found that natural recombination of a coronavirus in shellfish led to the natural development of an FCS in the virus. Once again, we see that everything needed to create SARS2 already exists and occurs in nature. And since there are millions upon millions of opportunities for viruses to recombine and mutate in different animals and humans over many years, it is much more likely that this happened there than that it happened in a handful of people who were infected in a laboratory over a few weeks. On top of all this, we now know that the RBD (receptor-binding domain) in the spike protein of SARS-CoV-2 has a sequence that is particularly well suited to binding to the ACE2 receptor on human cells. This was not known before the pandemic, and this property could therefore hardly have been constructed synthetically in a laboratory. On the other hand, we have seen optimizations here through natural mutations in newer variants such as Omicron, suggesting that this is something that can happen through evolution. So again, if researchers at WIV had the goal of inserting an FCS into an existing coronavirus, they would have had to be able to see into the future and know things that no one knew at the time, use methods that are completely unusual and impractical, with viruses they did not have, and on top of that do a very sloppy job that in practice would most likely have led to a failed experiment. ### Conclusion Finally, it should be mentioned that SARS2 has no genetic signatures that violate the laws of nature, such as barcoding. There are therefore no signs in the virus that indicate that it has been genetically manipulated in a laboratory. On the contrary, the genome bears the hallmarks of natural selection, which is very well supported by numerous genetic analyses, and all of its characteristics are found in closely related coronaviruses in nature. This is, as I understand it, the main argument for virologists generally leaning towards SARS2 having a natural origin rather than being laboratory-created. So regardless of what one might think about the handling of the case, with secrecy, lack of transparency, and suspicious private email communication between researchers back in early 2020, it means little for what we actually have in terms of virological and genetic evidence now in 2024. And if you base your opinion on that, the conclusion that SARS-CoV-2 arose through natural evolution is the most likely one. * * * Two thorough articles that go through much of the evidence for natural origin and against lab leak that should be read: * Treacherous ancestry - An extraordinary hunt for the ghosts of SARS-CoV-2 * The case against the lab leak theory Other interesting reading material, videos and sources: * Meet the scientist at the center of the covid lab leak controversy * The origins of SARS-CoV-2: A critical review * The origin, transmission and clinical therapies on coronavirus disease 2019 (COVID-19) outbreak – an update on the status * TWiV 940: Eddie Holmes in on viral origins * New report names 3 Wuhan lab employees who got sick from covid * Practically-A-Book Review: Rootclaim $100,000 Lab Leak Debate * The proximal origin of SARS-CoV-2 * Mutation signatures inform the natural host of SARS-CoV-2 * The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2 * The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic * The evidence remains clear: SARS-CoV-2 emerged via the wildlife trade * A Critical Analysis of the Evidence for the SARS-CoV-2 Origin Hypotheses * The harms of promoting the lab leak hypothesis for SARS-CoV-2 origins without evidence * Lab Leak Mania * The New York Times Is Failing Its Readers Badly on Covid * Bad Reasoning * Surveillance of SARS-CoV-2 at the Huanan Seafood Market * What we can and cannot learn from SARS-CoV-2 and animals in metagenomic samples from the Huanan market * No evidence of systematic proximity ascertainment bias in early COVID-19cases in Wuhan * The coronavirus lab leak hypothesis is damaging science * The Sarbecovirus origin of SARS-CoV-2’s furin cleavage site * The New York Times goes all in on “lab leak” * TWiV 762: SARS-CoV-2 origins with Robert Garry * * * 1. Pangolins and civets were banned from animal markets after the SARS1 outbreak in 2002/2003, as the infection at that time came from these species. But tragically, the animals were still sold at the Huanan wet market. ↩
tjomlid.com
June 11, 2025 at 10:45 PM
Lablekkasje - for eller mot
**Her har jeg samlet en punktvis liste over argumentene for og mot lablekkasje-hypotesen(e).** Kilder og forklaringer finner du i en den fulle bloggposten, men denne kan være grei å lese om du ikke orker å lese noe mer. Jeg tar også for meg Sigrid Bratlies egen hypotese om hva som skjedde, og gjennomgår alle hennes ti punkter. ### Argumenter mot lablekkasje og for zonoose **Hva er egentlig argumentene mot lablekkasje-hypotesen?** 1. Det finnes ingen evidens for at det noensinne var syke ansatte ved Wuhan-laben. 2. Det finnes sterk evidens for at det skjedde to separate smitteoverføringer fra dyr til menneske, de såkalte A- og B-linjene. Det er ikke forenelig med lablekkasje. 3. Spredningsmønster av tidlig smitte basert på mange ulike kilder og analyser viser alle et cluster rundt Wuhan Institute of Virology (WIV). 4. Miljøprøver fra våtmarkedet viser at SARS2-viruset fantes der, med nøyaktig den genetiske variasjon man forventer fra de tidligste variantene. De var også flest positive prøver fra den delen av markedet hvor de aktuelle dyreartene ble holdt fanget. 5. Blodbank-analyser av 40 000 blodprøver fra kinesiske sykehus samlet inn høsten 2019 og tidlig 2020 i Wuhan finner ingen smittede før desember 2019. Dette er et klassisk eksempel på konspiratorisk argumentasjon, fordi disse prøvene maste lablekkasje-tilhengerne om at kineserne måtte frigi i håp om at det skulle vise smitte tidligere på høsten, noe som kunne sammenfalle med deres påstander om lockdowns, smittede soldater, smittede ansatte osv fra september og oktober 2019. Men da dataene ble frigitt og viste at det ikke var noe smitte før desember, blir det ikke nevnt mer. Det passer ikke deres foretrukne hypotese, så da tier vi om det. Det samme gjør Bratlie, som aldri nevner dette i boken sin. Men hun stoler jo bare på kinesiske data når de støtter hennes hypotese. 6. Superspreder-hypotesen forutsetter også at to smittede laboratorieansatte uavhengig av hverandre dro rett fra WIV og til våtmarkedet med kanskje en ukes mellomrom. Uten å smitte noen av sine kollegaer. Uten å smitte noen i familiene sine. Uten å smitte venner. Uten å smitte noen på bussen eller toget. Uten å smitte noen på butikken de handler i. Men de smitter begge to folk på våtmarkedet, og kun der. De drar så hjem igjen. Igjen uten å smitte noen andre. Drar på jobb uten symptomer. Hver dag i et par uker. Og så skjer det plutselig en superspreder-hendelse på våtmarkedet. Sannsynlig? Nope. 7. Det finnes fortsatt ingen evidens for at WIV hadde virus som er like nok til å kunne ha vært "stammen" til SARS2. Det nærmeste viruset som er kartlagt der er RaTG13, som bare er ca 96% likt, og alle er enige om at derfor ikke kan ha vært brukt til å lage SARS-CoV-2. Det ville kreve et virus mer enn 99% likt. Det nærmeste viruset funnet i naturen er noen varianter av BANAL-virusene i Laos, men heller ikke de er like nok til å kunne brukes som stamme for å lage SARS2. Dette vet vi fordi det ble publisert oversikter over hvilke virus de forsket på ved WIV flere ganger, blant annet i 2018 da de publiserte en liste over alle virusene de hadde. Kun ti av dem var sarbekovirus, og ingen av dem i nærheten av SARS2. DEFUSE-søknaden listet også 180 koronavirus, og en studie som ble sendt inn for publisering i 2019 listet 200 koronavirus i samlingen, uten at noe virus som minner om SARS2 er beskrevet der. Og husk, før pandemien var det ingen grunn til at de skulle holde et slikt virus skjult. DEFUSE baserte også søknaden på bruk av viruset WIV1, som bare er 80% likt SARS2, og dermed heller ikke kan ha vært opphavet. 8. Ingen tegn på genetisk manipulasjon av SARS2-viruset. Furinsetet er satt inn "out-of-frame". Forskere ville uansett ikke "satt inn" et furinsete, men utviklet det gjennom evolusjon basert på det som finnes i genomet fra før. De ville brukt et furinsete de visste var effektivt, slik det er gjort i tidligere eksperimenter, ikke lage noe helt nytt som de ikke aner om vil fungere. Og å bare sette inn et furinsete er ikke nok i seg selv, fordi SARS2 sitt furinsete har egenskaper som optimaliserer for smitte som vi ikke kjente til før i 2020. (Alt dette skriver jeg mer detaljert om i tidligere bloggpost.) 9. To av tre av de artene man fant SARS1 i, mårhund og sivett, fantes på våtmarkedet akkurat der man fant flest positive miljøprøver med SARS2. Her kan det nevnes at tidligere i 2019 ble tre salgsboder bøtelagt av kinesiske myndigheter for å drive ulovlig salg av dyr. To av disse salgsbodene hadde positive SARS2-prøver. Tilfeldig? 10. En uventet stor andel av de aller første smittetilfellene som ble registrert allerede _før_ man begynte å mistenke våtmarkedet hadde likevel tilknytning til våtmarkedet. Ettersom disse tilfellene ble journalført før våtmarkedet var mistenkt, kan det ikke være et resultat av bekreftelsesskjevhet. 11. I prøver fra andre markeder i Wuhan finner man nesten ingen positive miljøprøver med SARS2. Det gir ingen mening hvis det var mennesker som brakte smitten til markeder, heller enn at det kom fra dyr der. Kun på Huanan våtmarkedet finnes man masse positive spor etter SARS2. Vi kjenner også antallet prøver som ble tatt, og at det var flest positive prøver i det sørvestre hjørnet hvor mårhunder, sivetter og bambusrotter ble holdt i bur. Ergo kan ikke dette mønsteret skyldes "sampling bias". For øvrig fant man også noen positive prøver i varehus som forsynte våtmarkedet med dyr, noe som også er et ganske tydelig tegn på en sammenheng mellom SARS2 og de aktuelle dyrene som mellomverter. 12. SARS2 er et rekombinant virus, og alle legobrikkene som kreves er allerede funnet i naturen i ulike koronavirus. Det er høyst plausibelt at blant de milliarder av viruseksperimenter gjennom tilfeldig rekombinering som skjer i milliarder av virus i milliarder av dyr hver eneste dag, så dukket SARS2 opp. Det er vesentlig mer plausibelt enn at de skal ha snublet over denne perfekte kombinasjonen av furinsetet, reseptorbindingsdomenet og de andre bestanddelene som krevde kunnskap man ikke hadde i 2019 gjennom ren tilfeldighet i løpet av noen måneder med forskning på noen få generasjoner av virus. 13. Et virus dyrket frem i laboratoriet i f.eks. humaniserte mus ville ikke være spesielt smittsomt i mennesker fra starten av. Det ville derimot være svært smittsomt i mus, men det var ikke Wuhan-varianten av SARS2. 14. Ingen evidens for mystiske hendelser i Wuhan høsten 2019. 15. Ingen ansatte ved WIV har meldt om smitte, mystisk sykdom eller noe annet eksepsjonelt som skjedde der høsten 2019. 16. Ingen dokumentert covid-sykdom i Wuhan før desember 2019. 17. Historisk presedens med at de samme dyr som på våtmarkedet, i de samme avstander, med samme kilde (flaggermus) har gitt oss koronavirusutbrudd i mennesker tidligere (SARS1/MERS). 18. Ingen evidens for faretruende dårlig sikkerhet ved WIV. 19. Det er ikke lagt frem noe sammenhengene tidslinje eller hypotese for lablekkasje som ikke strider mot vitenskapelig evidens eller som er i intern konflikt med seg selv. 20. Ingen evidens for at de seks gruvearbeiderne som ble syke i Mojiang-gruven i 2012 hadde SARS2. Analyser tyder på at det ikke var det. 21. SARS2 kunne smitte mennesker, men var ikke optimalisert for smitte i mennesker. Furinsetet kunne vært bedre, og det ble mer smittsomt og mer farlig etter videre evolusjon senere i pandemien. 22. Ut fra det vi vet om World Military Games kan ikke dette ha vært en superspreder-hendelse i oktober 2019. 23. Et flertall av amerikanske etterretningsorganisasjoner mener zonoose er mest sannsynlig, og de er alle enige om at viruset ikke bærer preg av genetisk manipulering, og at det ikke finnes evidens for at det foregikk GoF-forskning ved WIV. 24. De tre ansatte ved WIV som det ble påstått var syke i november 2019, stemmer heller ikke med Bratlies tidslinje (virusdatabase tatt ned i september, World Military Games og mystiske hendelser i oktober), og de benekter å ha vært syke. De jobbet ikke en gang med forskning på levende virus, noen hadde symptomer som ikke stemte med covid-19, og testet negativt for SARS2 i januar 2020. 25. Kritikken mot de sentrale studiene som argumenteter for våtmarkedet som episenter, kritiserer bare et par isolerte analyser, og finner ikke at et episenter mer sannsynlig var nærmere WIV eller langt borte fra våtmarkedet. 26. Tidligere lablekkasjer har vist tydelig tilknytning mellom smitte og laboratoriet, og har ikke vært med nye virus, kun kjente virus som kunne smitte mennesker. 27. SARS2 ser ut som "et puslespill", som er nettopp det man forventer av et rekombinant sarbekovirus. 28. Reproduksjonsraten inne i våtmarkedet og utenfor tyder på at det ikke var noen supersprederhendelse der, men at smitten tvert i mot oppstod der. 29. Både lignende furinseter og nesten identiske RBD finnes i andre koronavirus i naturen. * * * ### Argumenter for lab-lekkasje Etter å ha lest boken har noen anmeldere blitt mer overbevist om at lablekkasje er sannsynlig. Jeg ble ikke det. Tvert imot ble det vel bare enda mer klart for meg hvordan denne hypotesen ikke har noe sammenhengende, plausibelt narrativ å stable på bena, men også hvor uredelig argumentasjonen er, og hvor ekstremt mange "hva hvis"-argumenter den baserer seg på. Er det da noe som helst som gjør at jeg fortsatt kan se på lablekkasje-hypotesen som plausibel? **Vel, her er de punktene som jeg mener fortsatt gjør at zoonose ikke kan sies å være 100% sikkert:** 1. Vi har ikke funnet hverken kilden til SARS2, altså det naturlige reservoaret, eller mellomvertene. Før vi finner dette, vil lablekkasje aldri kunne avfeies med hundre prosent sikkerhet. Og selv om vi finner dem, finnes det jo alltid en liten mulighet for at lablekkasje var årsaken. Men husk at det heller ikke er forventet at vi skulle ha funnet disse ennå. Historisk sett vet vi at det kan ta veldig lang tid, så mangelen på disse taler heller ikke for lablekkasje. 2. Høringene i USA avdekket at det sannsynligvis ikke var full åpenhet om hva slags forskning som foregikk ved WIV. Det er likevel ikke noe evidens for at viruset ble skapt i et laboratorium, gitt at man ikke har funnet noen viruskandidat som kunne vært brukt som virusstamme, men det utelukker i hvert fall ikke helt at slik forskning som i teorien kunne ha skapt SARS2 foregikk der. Men igjen, smittespredningsmønster ut fra våtmarkedet, mangel på evidens for smittetilfeller ved laben, ingen tegn på at noen der kjente til noen smittehendelse, publiserte virusoversikter som ikke viser noe lignende virus i WIV før 2019 osv, svekker likevel dette punktet betydelig. 3. Forskeren Yusen Zhou som hadde samarbeidet med Shi Zhengli innen vaksineforskning, søkte i februar 2020 om patent på en vaksine mot covid. Bratlie skriver at det var den "aller første vaksinen", noe som ikke stemmer, men det er likevel tidlig. Andre hadde søkt om patent på vaksiner før ham, men han var den eneste som hadde gjennomført så pass omfattende dyrestudier som han beskrev. De fleste eksperter mener at det ville krevd minst 3-4 måneder å gjennomføre disse studiene, slik at han måtte ha kjent til SARS2 allerede senest november 2019, flere uker før viruset ble sekvensert og offentlig beskrevet. Samtidig så var han en av de fremste ekspertene i verden på dette, med lang erfaring med denne type virus, så andre mener det heller ikke er helt usannsynlig at han kunne ha fått dette til bare i løpet av noen få uker, forutsatt flaks med at alle forsøk gikk etter planen. Det ser likevel ikke ut til at eksperter flest legger mye vekt på dette, fordi det kan forklares naturlig. Det er de eneste tre punktene jeg sitter igjen med som åpner for muligheten for lablekkasje etter å ha lest boken. Ingen av dem veier tungt som evidens for lablekkasje, men gjør at lablekkasje fortsatt ikke kan utelukkes, selv om jeg mener at evidensen for zoonose gjør meg minst 90% sikker på at det er riktig scenario. * * * ### Bratlies hypotese Mot slutten av boken legger Sigrid Bratlie frem sin egen hypotese om hva som forårsaket pandemien. Her er en gjennomgang av den hvor hennes punkter er oppsummert/parafrasert i uthevet tekst, med mindre kommentarer under hvert punkt: 1. **Zhengli Shi og Peter Daszak fant et virus i Mojiang-gruven som de ga navnet BtCov/4991.** Sant. 2. **Gruvearbeidere i Mojiang ble syke og halvparten døde av noe som kan ha vært covid. De brukte viruset de fant der til å sette inn et furinsete i forskning ved WIV for å kunne lage vaksiner mot et slikt potensielt virus, noe som gjorde at Yusen Zhou kunne være så tidlig ute med vaksinepatent.** Problemet med dette er at gruvearbeiderne neppe var syke av et virus, men heller muggsopp. Og hvis det var et virus, er det ingen evidens for at det var noe som kan ha vært SARS2. Det er ingen evidens for at WIV hadde noe virus nærmere beslektet SARS2 enn RaTG13, som ikke er likt nok til å kunne brukes. 3. **Det skjedde et smitteuhell ved WIV, og det ble iverksatt tiltak for å begrense skaden i oktober 2019.** Det finnes ingen evidens for dette. Ingen plausible tegn på at det skjedde noe spesielt ved WIV i oktober 2019. Og hvis noe slikt skjedde, så kolliderer det med Bratlies påstander om smitte i Europa mye tidligere. 4. **De første smittetilfellene ga ingen symptomer eller mild sykdom, og mer alvorlige tilfeller ble tolket som influensa og gikk under radaren.** Dette er i konflik med påstanden om at viruset skal ha kommet fra Mojiang-gruven, fordi der var jo viruset 50% dødelig. Gjorde de RoF-forskning - Reduction of Function? Hvorfor skriver da Bratlie så mye om GoF? 5. **World Military Games i Wuhan i oktober 2019 var en superspreder-hendelse som spredte smitten til andre deler av verden.** Ingen data understøtter dette. Tvert i mot finner man ikke at deltakere der startet noen epidemier i sine hjemland. Virusanalyser støtter heller ikke dette argumentet. 6. **Viruset utviklet seg videre, først til A-linjen som senere ble til B-linjen. En person smittet av B-linjen dro til Huanan våtmarked og startet pandemien.** Genetiske analyser taler mot at B utviklet seg fra A i mennesker. De ser ut til å ha hoppet over fra dyr til mennesker i to ulike hendelser, begge i våtmarkedet. Dette punktet taler også mot et av hennes sentrale påstander om at viruset var så godt tilpasset mennesker fra starten av. Her skriver hun derimot at viruset utviklet seg i mennesker i nesten to måneder før det var potent nok til å starte en pandemi. Det taler mot et virus genetisk modifisert for å være spesielt smittsomt i mennesker. Vi vet også at våtmarkedet ikke var en superspreder-hendelse, og det er usedvanlig lite plausibelt at pandemien skulle startet der - av alle plasser i Wuhan - hvis det ble ført til markedet av et menneske. 7. **Nå ble smitten oppdaget, og man testet mest nær markedet, noe som førte til et skeivt bilde av smittespredningen. Kinesiske myndigheter fjernet dyrene og tok ned databasen over virus.** Virusdatabasen ble tatt ned i september, så det punktet taler jo sterkt mot at tiltak for å skjule smitten først ble iverksatt etter at smitten ble oppdaget i desember. Det er også feil at man primært samlet data om pasienter med tilknytning til markedet. Analyser hvor alle disse er tatt bort, viser fortsatt et episenter ved våtmarkedet. Og det finnes pasientdata fra før denne koblingen til våtmarkedet ble mistenkt, og de peker også mot våtmarkedet. 8. **Kineserne var sene med å varsle verden, men da virusgenomet ble offentliggjort i januar 2020 oppdaget forskere at det så genetisk manipulert ut. Det virket også som om det var godt tilpasset smitte i mennesker.** Igjen så taler jo dette mot argumentene hennes om at viruset allerede hadde sirkulert lenge i mennesker med rik mulighet til å tilpasse seg. Vi vet også at viruset ble mye mer smittsomt i mennesker først senere i 2020, slik at det på ingen som helst måte var optimalisert for mennesker. Bratlie sier jo selv at viruset spredte seg til andre land tidligere høsten 2019, men ingen av disse førte til smitte hos andre, noe som også taler mot at det var så godt tilpasset mennesker. Årsaken til at forskere mistenkte genetisk manipulering var at det hadde et RBD tilpasset mennesker, og et furinsete. Etter kort tid fant man at begge disse allerede finnes i lignende virus i naturen, og man gikk derfor bort fra ideen om at kun genetisk manipulasjon kunne ha skapt et slikt virus. 9. **Shi Zhengli forsøkte å dekke over alt som kunne peke i retning av at det var hun som hadde skapt viruset. Bratlie tror ikke på at det offentliggjorte genomet til RaTG13 er korrekt, og mener Shi har manipulert data for å skjule at det kan ha vært brukt som virusstamme for SARS2.** Det finnes ingen evidens for noe av dette. Det er bare spekulasjoner basert på rykter og data som misrepresenteres gjennom hele boken. 10. **Sentral forskere som Kristian Andersen og Ralph Baric varslet myndighetene og forskningsverdenen om at dette kunne være en lablekkasje, men det kunne skape så mye trøbbel at de alle gikk sammen for å dekke over denne konklusjonen og lyve om hva dataene viste.** Det finnes ingen evidens for noe av dette. Det er bare spekulasjoner basert på rykter og data som misrepresenteres gjennom hele boken.
tjomlid.com
June 10, 2025 at 6:23 PM
Saksynt på Magic Pages
**Jeg har atter en gang flyttet bloggen min.** Som mange av dere vet har jeg hatt bloggen min på egen server mesteparten av tiden. Fra den ble startet i rundt 2005 har jeg stort sett hostet den på egen Wordpress-installasjon på egne servere. Først på serverne til mitt selskap, Thin AS, i vårt backup-serverrom på Tonstad i Sirdal, og så senere på en server leid av Linode. ### Substack I 2023 tok jeg det store valget om å flytte hele bloggen over på Substack. Hovedårsaken var at jeg var lei av å måtte drifte alt selv, med kostnadene det medførte, og jeg ønsket å ha større muligheter til å sende ut bloggposter som nyhetsbrev. Jeg valgte Substack noe motvillig grunnet deres assosiasjoner til en del høyrevridde krefter jeg ikke er fan av, men Substack var den eneste tjenesten som klarte å importere hele Wordpress-arkivet mitt. Så det avgjorde egentlig saken. Og det fungerte ganske greit, men det var mye med Substack jeg ikke likte så godt. I tillegg koblet de seg stadig mer på anti-demokratiske, høyrevridde krefter, så mot slutten av 2024 bestemte jeg meg for å flytte til Ghost, en open source bloggeplattform. ### Ghost Med Ghost kan man enten ha bloggen på deres infrastruktur, eller laste ned koden og hoste bloggen selv. Jeg valgte det siste, fordi Ghost sine abonnenter er veldig dyre. Jeg leide server hos Linode på nytt, og brukte julen til å få opp nginx, varnish, Ghost, e-posttjenester, CloudFlare-konfigurasjon, og importere hele sulamitten fra Substack til Ghost. Men etter noen måneder har jeg igjen blitt lei av å måtte drifte alt selv. Ikke minst oppdaget jeg først nå at søkefunksjonen i Ghost ikke indekserer, altså lar deg søke i, brødteksten til bloggpostene! Du kan bare søke i titler og "excerpt", altså litt av starten på brødteksten. Før jeg fikk dette bekreftet hadde jeg en mistanke om at noe var galt, fordi jeg flere ganger hadde gått inn på Saksynt for å finne en bloggpost om noe jeg visste jeg hadde skrevet om, men uten å finne noe. Jeg trodde hver gang at jeg sikkert måtte ha husket feil - at jeg ikke hadde skrevet om det likevel. Men forklaringen var at Ghost sitt søk rett og slett ikke lar deg søke i alt innhold. Det var uholdbart. Etter tyve år med blogging er denne bloggen et arkiv jeg - og mange andre - ofte bruker til å søke frem informasjon. En god søkefunksjon er kritisk viktig. Jeg satte derfor i gang med å forsøke å implementere tredjeparts-søkefunksjon i Ghost. Den mest aktuelle er noe som heter Meilisearch. Det er en selvstendig løsning som noen har laget en Ghost-integrasjon av, og som man kan sette opp for bloggen sin. Etter en del styr fikk jeg det til å fungere, men den søkte også i _upubliserte_ bloggposter. Både uferdige kladder jeg hadde liggende, og gamle bloggposter som var avpublisert. Det var ganske krise. ### Magic Pages Mens jeg søkte etter løsninger på dette, kom jeg over Magic Pages. Det er et enkeltmannsfirma drevet av en ildsjel i Østerrike som hoster Ghost-blogger på infrastruktur hos Hetzner. Ettersom Ghost er åpen kildekode, har kan laget et system for å kunne hoste og drifte mange Ghost-blogger på en felles løsning, men med sine egne tilpasninger. Og det til en rimelig pris. Spennende nok i seg selv. Men det som virkelig gjorde det attraktivt var at han nettopp hadde kodet sin egen _søkefunksjon_ for Ghost som man kan få hvis man abonnerer på hans Pro-pakke - som jeg uansett skulle ha. Jeg sendte ham en mail for å høre om han kunne garantere at jeg fikk flyttet over bloggen og abonnenter på en trygg og sømløs måte, og han sa at det kunne han. Det var noe har gjorde daglig. Så jeg hoppet i det, og flyttet bloggen til Magic Pages. Jeg aktiverte hans avanserte søkefunksjon, og hurra - nå virker søk som det skal! Dermed kan jeg si opp min Linode-server, fjerne all mailkonfigurasjon, forenkle en del annet oppsett, og slippe alt styret med å fikse ting selv når noe går galt. Ulempen med en slik løsning er selvsagt noe mindre fleksibilitet, men så langt har jeg ikke hatt noe behov for å gjøre spesialtilpasninger i bloggen, så jeg tror egentlig ikke jeg vil savne det. Og skulle det være noe jeg trenger, virker fyren bak Magic Pages veldig fleksibel og villig til å gjøre tilpasninger. Nå håper jeg bare fornying av abonnenter via Stripe fungerer som det skal, og at utsending av mail vil fungere (denne bloggposten blir første test av det), men hvis ikke så føler jeg meg trygg på at Jannis i Magic Pages vil hjelpe meg. Jeg har også noen tanker og innspill jeg vil sende ham om søkefunksjonen og annet, og håper det er ting han har tid og ønske om å tilpasse for å gjøre tjenestene enda bedre. Vel, det var en liten statusoppdatering herfra. Ha en fin pinsehelg!
tjomlid.com
June 7, 2025 at 11:25 AM