Ryan Wick
@rrwick.bsky.social
Bioinformatician at the Centre for Pathogen Genomics at the University of Melbourne
I don't know what's behind that bump, but I'm very curious! I've seen it before, so I think it's an ONT thing (not a this-run thing). Here's a qscore-vs-length plot which shows that this bimodal distribution occurs at all read lengths.
May 27, 2025 at 10:09 PM
I don't know what's behind that bump, but I'm very curious! I've seen it before, so I think it's an ONT thing (not a this-run thing). Here's a qscore-vs-length plot which shows that this bimodal distribution occurs at all read lengths.
It's a replacement for `conda env list` that shows more useful info: a description, last update date, and versions of key tools. You just add a simple `envinfo.txt` file to each environment to define what you care about.
March 27, 2025 at 4:34 AM
It's a replacement for `conda env list` that shows more useful info: a description, last update date, and versions of key tools. You just add a simple `envinfo.txt` file to each environment to define what you care about.
A quick reminder: if CheckM reports an assembly as <100% complete and >0% contaminated, that doesn't necessarily mean it's incomplete or contaminated. Here are RefSeq's CheckM results for a genome I'm confident is 100% complete and 0% contaminated.
February 20, 2025 at 4:09 AM
A quick reminder: if CheckM reports an assembly as <100% complete and >0% contaminated, that doesn't necessarily mean it's incomplete or contaminated. Here are RefSeq's CheckM results for a genome I'm confident is 100% complete and 0% contaminated.