René Buschow
@renebuschow.bsky.social
Papa, cell biologist, imaging guy @molgen.mpg.de
... i suggest pixelwise spearman correlations in that case...
July 14, 2025 at 7:44 PM
... i suggest pixelwise spearman correlations in that case...
Good old Hoechst in a new colour...
June 17, 2025 at 8:00 PM
Good old Hoechst in a new colour...
@matthewkraushar.bsky.social ... we did intro 2, same sample, same people...
May 20, 2025 at 11:42 AM
@matthewkraushar.bsky.social ... we did intro 2, same sample, same people...
Hey Matt, good hire. Arie did her first confocal brain thingi today. What a pro.
May 13, 2025 at 12:09 PM
Hey Matt, good hire. Arie did her first confocal brain thingi today. What a pro.
April 3, 2025 at 6:07 PM
@vallierlab.bsky.social this is how we quantify cell cycle stages on simple Hoechst stains in a microscope... happy to talk you through the plots n try to apply on your biology
March 24, 2025 at 9:36 AM
@vallierlab.bsky.social this is how we quantify cell cycle stages on simple Hoechst stains in a microscope... happy to talk you through the plots n try to apply on your biology
Got a new laptop sticker from the family...
January 3, 2025 at 10:25 AM
Got a new laptop sticker from the family...
@bulutkarslioglu.bsky.social Huhu Aydan, not quite done yet... but have a steady progress
December 12, 2024 at 9:37 PM
@bulutkarslioglu.bsky.social Huhu Aydan, not quite done yet... but have a steady progress
@jesseveenvliet.bsky.social Dr. Jesse as promissed ap-axis drawer... its only ~5 lines... but can save many hours #throughput #imageanalysis #imagej
![// by Rene Buschow (@molgen.mpg.de 2024), IJ 1.53c, requires morpholib, starts on binary image
function doAxis()
{
id=getTitle();
run("Convert to Mask");
run("Skeletonize");
run("Geodesic Diameter", "label="+id+" distances=[Quasi-Euclidean (1,1.41)] show image="+id+" export");
roiManager("Select", roiManager("count")-1);
run("Interpolate", "interval=50 smooth adjust");
roiManager("update");
}
doAxis()](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:fben47vtmssc2hk2u3yx7hxb/bafkreih6roavqzgc4fm46pfo3nmrcdwmjqk2vf4hfe5ft77s7e2rskr7na@jpeg)
November 24, 2024 at 12:27 AM
@jesseveenvliet.bsky.social Dr. Jesse as promissed ap-axis drawer... its only ~5 lines... but can save many hours #throughput #imageanalysis #imagej