Rayyan
@rayanomics.bsky.social
Studying MS Biology @LUMS.
Interested in ncRNAs, Genomics, Epigenomics & Gene regulation.
Interested in ncRNAs, Genomics, Epigenomics & Gene regulation.
Reposted by Rayyan
We’ve built this virtual plant scientist PlantScience.ai to grow alongside human researchers🌿. It thinks like an expert, cites like a scholar, and never stops learning. Come and have a chat with it! @yiliangding.bsky.social @johninnescentre.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
PlantScience.ai
PlantScience.ai
October 28, 2025 at 12:44 PM
We’ve built this virtual plant scientist PlantScience.ai to grow alongside human researchers🌿. It thinks like an expert, cites like a scholar, and never stops learning. Come and have a chat with it! @yiliangding.bsky.social @johninnescentre.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Rayyan
Congrats, Joe Ecker @salkinstitute.bsky.social, to receiving the McClintock Prize! Joe has been a visionary leader of the field of genetics and genomics – not only for plants – for decades
www.salk.edu/news-release...
www.salk.edu/news-release...
October 10, 2025 at 5:34 PM
Congrats, Joe Ecker @salkinstitute.bsky.social, to receiving the McClintock Prize! Joe has been a visionary leader of the field of genetics and genomics – not only for plants – for decades
www.salk.edu/news-release...
www.salk.edu/news-release...
Reposted by Rayyan
Out First Release in @science.org this week:
A large scale analysis of the epigenetics of transposable elements in Arabidopsis shows transgenerational stability
www.science.org/doi/10.1126/...
#PlantScience
A large scale analysis of the epigenetics of transposable elements in Arabidopsis shows transgenerational stability
www.science.org/doi/10.1126/...
#PlantScience
Transposable elements are vectors of recurrent transgenerational epigenetic inheritance
DNA methylation loss at transposable elements (TEs) can affect neighboring genes and be epigenetically inherited in plants, yet the determinants and significance of this additional system of inheritan...
www.science.org
September 22, 2025 at 4:09 PM
Out First Release in @science.org this week:
A large scale analysis of the epigenetics of transposable elements in Arabidopsis shows transgenerational stability
www.science.org/doi/10.1126/...
#PlantScience
A large scale analysis of the epigenetics of transposable elements in Arabidopsis shows transgenerational stability
www.science.org/doi/10.1126/...
#PlantScience
Reposted by Rayyan
New Article: "Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations" rdcu.be/eGD0G
With News & Views: "Adaptation beyond the DNA sequence" rdcu.be/eGD03
With News & Views: "Adaptation beyond the DNA sequence" rdcu.be/eGD03
September 16, 2025 at 9:43 AM
New Article: "Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations" rdcu.be/eGD0G
With News & Views: "Adaptation beyond the DNA sequence" rdcu.be/eGD03
With News & Views: "Adaptation beyond the DNA sequence" rdcu.be/eGD03
Reposted by Rayyan
✨Redefining epigenetic variation in evolution. Our @NaturePlants paper shows gene body DNA methylation as a major force shaping expression, traits, and adaptation in plants. Synergy with Shahzad @ShahzadZaigham & Zilberman Labs—congrats🎉. rdcu.be/eFRJy @MSU_PRI
September 12, 2025 at 3:02 PM
✨Redefining epigenetic variation in evolution. Our @NaturePlants paper shows gene body DNA methylation as a major force shaping expression, traits, and adaptation in plants. Synergy with Shahzad @ShahzadZaigham & Zilberman Labs—congrats🎉. rdcu.be/eFRJy @MSU_PRI
Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations - Nature Plants
This study shows that epigenetic gene body DNA methylation regulates transcription and accounts for much of its variance in the Arabidopsis population, efficiently identifies genes regulating diverse ...
www.nature.com
September 12, 2025 at 10:54 AM
Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Rayyan
Our #research on #drought #recovery, now published with @springernature.com in @natcomms.nature.com:
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...
Read thread below 👇
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...
Read thread below 👇
Drought recovery in plants triggers a cell-state-specific immune activation - Nature Communications
Post-drought rehydration triggers a preventive immune response in plants, revealing targets to enhance crop resilience by linking drought stress recovery with improved pathogen resistance.
doi.org
August 31, 2025 at 2:17 AM
Our #research on #drought #recovery, now published with @springernature.com in @natcomms.nature.com:
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...
Read thread below 👇
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...
Read thread below 👇
Reposted by Rayyan
On the cover of @natplants.nature.com this month:
@leobaumgart.bsky.social @greensi.bsky.social @abmora.bsky.social @omalley-regulome.bsky.social et al. map binding sites for 360 TFs across 10 🌿plant🌿 species using a new multiDAP approach
Here is Sharon's explainer 🧵:
bsky.app/profile/gree...
@leobaumgart.bsky.social @greensi.bsky.social @abmora.bsky.social @omalley-regulome.bsky.social et al. map binding sites for 360 TFs across 10 🌿plant🌿 species using a new multiDAP approach
Here is Sharon's explainer 🧵:
bsky.app/profile/gree...
August 20, 2025 at 12:45 AM
On the cover of @natplants.nature.com this month:
@leobaumgart.bsky.social @greensi.bsky.social @abmora.bsky.social @omalley-regulome.bsky.social et al. map binding sites for 360 TFs across 10 🌿plant🌿 species using a new multiDAP approach
Here is Sharon's explainer 🧵:
bsky.app/profile/gree...
@leobaumgart.bsky.social @greensi.bsky.social @abmora.bsky.social @omalley-regulome.bsky.social et al. map binding sites for 360 TFs across 10 🌿plant🌿 species using a new multiDAP approach
Here is Sharon's explainer 🧵:
bsky.app/profile/gree...
Reposted by Rayyan
From a gene’s single cell expression–through spatial localization–to novel function, and beyond!
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...
A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle - Nature Plants
This study presents an extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents ten distinct developmental time points inclusive of six diverse organs.
www.nature.com
August 19, 2025 at 7:20 PM
From a gene’s single cell expression–through spatial localization–to novel function, and beyond!
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...
Reposted by Rayyan
Out after peer review, collaborative study from Nordborg & Weigel labs with help from many others. Not the largest collection of new Arabidopsis thaliana genomes, but we hopefully put forward some good ideas for how to think about pangenomes and their analysis!
www.nature.com/articles/s41...
www.nature.com/articles/s41...
August 20, 2025 at 6:23 AM
Out after peer review, collaborative study from Nordborg & Weigel labs with help from many others. Not the largest collection of new Arabidopsis thaliana genomes, but we hopefully put forward some good ideas for how to think about pangenomes and their analysis!
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Rayyan
Thrilled to have our spatial single-cell atlas of the Arabidopsis lifecycle in @NaturePlants. Turns out that its easy to make nice images when spatial expression of 1,000 genes is available! 1/n
@natanellae.bsky.social @tatsuyanobori.bsky.social @joeecker.bsky.social
www.nature.com/articles/s41...
@natanellae.bsky.social @tatsuyanobori.bsky.social @joeecker.bsky.social
www.nature.com/articles/s41...
August 19, 2025 at 9:17 AM
Thrilled to have our spatial single-cell atlas of the Arabidopsis lifecycle in @NaturePlants. Turns out that its easy to make nice images when spatial expression of 1,000 genes is available! 1/n
@natanellae.bsky.social @tatsuyanobori.bsky.social @joeecker.bsky.social
www.nature.com/articles/s41...
@natanellae.bsky.social @tatsuyanobori.bsky.social @joeecker.bsky.social
www.nature.com/articles/s41...