arXiv q-bio.BM Biomolecules
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Reposted by arXiv q-bio.BM Biomolecules
Rohit Dilip, Ayush Varshney, David Van Valen: Adaptive Protein Tokenization https://arxiv.org/abs/2602.06418 https://arxiv.org/pdf/2602.06418 https://arxiv.org/html/2602.06418
February 9, 2026 at 6:33 AM
Rohit Dilip, Ayush Varshney, David Van Valen: Adaptive Protein Tokenization https://arxiv.org/abs/2602.06418 https://arxiv.org/pdf/2602.06418 https://arxiv.org/html/2602.06418
[2026-02-09 Mon (UTC), no new articles found for q-bioBM Biomolecules]
February 9, 2026 at 6:49 AM
[2026-02-09 Mon (UTC), no new articles found for q-bioBM Biomolecules]
Reposted by arXiv q-bio.BM Biomolecules
Cai, He, Hu, Wang, Luo, Zhu, Pilla, Li, Liu, Luo: A Large-Scale Dataset for Molecular Structure-Language Description via a Rule-Regularized Method https://arxiv.org/abs/2602.02320 https://arxiv.org/pdf/2602.02320 https://arxiv.org/html/2602.02320
February 3, 2026 at 6:32 AM
Cai, He, Hu, Wang, Luo, Zhu, Pilla, Li, Liu, Luo: A Large-Scale Dataset for Molecular Structure-Language Description via a Rule-Regularized Method https://arxiv.org/abs/2602.02320 https://arxiv.org/pdf/2602.02320 https://arxiv.org/html/2602.02320
Reposted by arXiv q-bio.BM Biomolecules
Nima Shoghi, Yuxuan Liu, Yuning Shen, Rob Brekelmans, Pan Li, Quanquan Gu: Scalable Spatio-Temporal SE(3) Diffusion for Long-Horizon Protein Dynamics https://arxiv.org/abs/2602.02128 https://arxiv.org/pdf/2602.02128 https://arxiv.org/html/2602.02128
February 3, 2026 at 6:39 AM
Nima Shoghi, Yuxuan Liu, Yuning Shen, Rob Brekelmans, Pan Li, Quanquan Gu: Scalable Spatio-Temporal SE(3) Diffusion for Long-Horizon Protein Dynamics https://arxiv.org/abs/2602.02128 https://arxiv.org/pdf/2602.02128 https://arxiv.org/html/2602.02128
Reposted by arXiv q-bio.BM Biomolecules
Kr\"uger, Hunklinger, Wolny, Adler, Tetko, Villalba: SEISMO: Increasing Sample Efficiency in Molecular Optimization with a Trajectory-Aware LLM Agent https://arxiv.org/abs/2602.00663 https://arxiv.org/pdf/2602.00663 https://arxiv.org/html/2602.00663
February 3, 2026 at 6:29 AM
Kr\"uger, Hunklinger, Wolny, Adler, Tetko, Villalba: SEISMO: Increasing Sample Efficiency in Molecular Optimization with a Trajectory-Aware LLM Agent https://arxiv.org/abs/2602.00663 https://arxiv.org/pdf/2602.00663 https://arxiv.org/html/2602.00663
Reposted by arXiv q-bio.BM Biomolecules
Fang Sheng, Mohammad Noaeen, Zahra Shakeri: ProDCARL: Reinforcement Learning-Aligned Diffusion Models for De Novo Antimicrobial Peptide Design https://arxiv.org/abs/2602.00157 https://arxiv.org/pdf/2602.00157 https://arxiv.org/html/2602.00157
February 3, 2026 at 6:51 AM
Fang Sheng, Mohammad Noaeen, Zahra Shakeri: ProDCARL: Reinforcement Learning-Aligned Diffusion Models for De Novo Antimicrobial Peptide Design https://arxiv.org/abs/2602.00157 https://arxiv.org/pdf/2602.00157 https://arxiv.org/html/2602.00157
Jiahao Zhang, Zeqing Zhang, Di Wang, Lijie Hu: Controlling Repetition in Protein Language Models https://arxiv.org/abs/2602.00782 https://arxiv.org/pdf/2602.00782 https://arxiv.org/html/2602.00782
February 3, 2026 at 6:49 AM
Jiahao Zhang, Zeqing Zhang, Di Wang, Lijie Hu: Controlling Repetition in Protein Language Models https://arxiv.org/abs/2602.00782 https://arxiv.org/pdf/2602.00782 https://arxiv.org/html/2602.00782
Jonathan Fiorentino, Michele Monti, Dimitrios Miltiadis-Vrachnos, Vittorio Del Tatto, Alessandro Laio, Gian Gaetano Tartaglia: Phase Transitions in Unsupervised Feature Selection https://arxiv.org/abs/2602.00660 https://arxiv.org/pdf/2602.00660 https://arxiv.org/html/2602.00660
February 3, 2026 at 6:49 AM
Jonathan Fiorentino, Michele Monti, Dimitrios Miltiadis-Vrachnos, Vittorio Del Tatto, Alessandro Laio, Gian Gaetano Tartaglia: Phase Transitions in Unsupervised Feature Selection https://arxiv.org/abs/2602.00660 https://arxiv.org/pdf/2602.00660 https://arxiv.org/html/2602.00660
Ge, Zhu, Zhang, Xiao, Bao, Xie, Chen, Lu, Wang, Guan, Gu, Bi, Zhu: AutoBinder Agent: An MCP-Based Agent for End-to-End Protein Binder Design https://arxiv.org/abs/2602.00019 https://arxiv.org/pdf/2602.00019 https://arxiv.org/html/2602.00019
February 3, 2026 at 6:49 AM
Ge, Zhu, Zhang, Xiao, Bao, Xie, Chen, Lu, Wang, Guan, Gu, Bi, Zhu: AutoBinder Agent: An MCP-Based Agent for End-to-End Protein Binder Design https://arxiv.org/abs/2602.00019 https://arxiv.org/pdf/2602.00019 https://arxiv.org/html/2602.00019
[2026-02-03 Tue (UTC), 3 new articles found for q-bioBM Biomolecules]
February 3, 2026 at 6:49 AM
[2026-02-03 Tue (UTC), 3 new articles found for q-bioBM Biomolecules]
Reposted by arXiv q-bio.BM Biomolecules
Dong Xu, Qihua Pan, Sisi Yuan, Jianqiang Li, Zexuan Zhu, Junkai Ji: Unveiling Scaling Behaviors in Molecular Language Models: Effects of Model Size, Data, and Representation https://arxiv.org/abs/2601.22757 https://arxiv.org/pdf/2601.22757 https://arxiv.org/html/2601.22757
February 2, 2026 at 6:34 AM
Dong Xu, Qihua Pan, Sisi Yuan, Jianqiang Li, Zexuan Zhu, Junkai Ji: Unveiling Scaling Behaviors in Molecular Language Models: Effects of Model Size, Data, and Representation https://arxiv.org/abs/2601.22757 https://arxiv.org/pdf/2601.22757 https://arxiv.org/html/2601.22757
Southern, Lu, Nerli, Stanton, Watkins, Seeger, Dreyer: Disentangling multispecific antibody function with graph neural networks https://arxiv.org/abs/2601.23212 https://arxiv.org/pdf/2601.23212 https://arxiv.org/html/2601.23212
February 2, 2026 at 6:50 AM
Southern, Lu, Nerli, Stanton, Watkins, Seeger, Dreyer: Disentangling multispecific antibody function with graph neural networks https://arxiv.org/abs/2601.23212 https://arxiv.org/pdf/2601.23212 https://arxiv.org/html/2601.23212
Shrey Goel, Pranam Chatterjee: Minimal-Action Discrete Schr\"odinger Bridge Matching for Peptide Sequence Design https://arxiv.org/abs/2601.22408 https://arxiv.org/pdf/2601.22408 https://arxiv.org/html/2601.22408
February 2, 2026 at 6:49 AM
Shrey Goel, Pranam Chatterjee: Minimal-Action Discrete Schr\"odinger Bridge Matching for Peptide Sequence Design https://arxiv.org/abs/2601.22408 https://arxiv.org/pdf/2601.22408 https://arxiv.org/html/2601.22408
[2026-02-02 Mon (UTC), 2 new articles found for q-bioBM Biomolecules]
February 2, 2026 at 6:49 AM
[2026-02-02 Mon (UTC), 2 new articles found for q-bioBM Biomolecules]
Reposted by arXiv q-bio.BM Biomolecules
Yuki Nakagaki, Eiji Yamamoto: Multiple binding modes of AKT on PIP$_3$-containing membranes https://arxiv.org/abs/2601.21216 https://arxiv.org/pdf/2601.21216 https://arxiv.org/html/2601.21216
January 30, 2026 at 6:46 AM
Yuki Nakagaki, Eiji Yamamoto: Multiple binding modes of AKT on PIP$_3$-containing membranes https://arxiv.org/abs/2601.21216 https://arxiv.org/pdf/2601.21216 https://arxiv.org/html/2601.21216
[2026-01-30 Fri (UTC), no new articles found for q-bioBM Biomolecules]
January 30, 2026 at 6:49 AM
[2026-01-30 Fri (UTC), no new articles found for q-bioBM Biomolecules]
[2026-01-29 Thu (UTC), no new articles found for q-bioBM Biomolecules]
January 29, 2026 at 6:54 AM
[2026-01-29 Thu (UTC), no new articles found for q-bioBM Biomolecules]
Kun Li, Longtao Hu, Yida Xiong, Jiajun Yu, Hongzhi Zhang, Jiameng Chen, Xiantao Cai, Jia Wu, Wenbin Hu: PCEvo: Path-Consistent Molecular Representation via Virtual Evolutionary https://arxiv.org/abs/2601.19257 https://arxiv.org/pdf/2601.19257 https://arxiv.org/html/2601.19257
January 28, 2026 at 6:49 AM
Kun Li, Longtao Hu, Yida Xiong, Jiajun Yu, Hongzhi Zhang, Jiameng Chen, Xiantao Cai, Jia Wu, Wenbin Hu: PCEvo: Path-Consistent Molecular Representation via Virtual Evolutionary https://arxiv.org/abs/2601.19257 https://arxiv.org/pdf/2601.19257 https://arxiv.org/html/2601.19257
Zefeng Lin, Zhihang Zhang, Weirong Zhu, Tongchang Han, Xianyong Fang, Tianfan Fu, Xiaohua Xu: EnzyPGM: Pocket-conditioned Generative Model for Substrate-specific Enzyme Design https://arxiv.org/abs/2601.19205 https://arxiv.org/pdf/2601.19205 https://arxiv.org/html/2601.19205
January 28, 2026 at 6:49 AM
Zefeng Lin, Zhihang Zhang, Weirong Zhu, Tongchang Han, Xianyong Fang, Tianfan Fu, Xiaohua Xu: EnzyPGM: Pocket-conditioned Generative Model for Substrate-specific Enzyme Design https://arxiv.org/abs/2601.19205 https://arxiv.org/pdf/2601.19205 https://arxiv.org/html/2601.19205
[2026-01-28 Wed (UTC), 2 new articles found for q-bioBM Biomolecules]
January 28, 2026 at 6:49 AM
[2026-01-28 Wed (UTC), 2 new articles found for q-bioBM Biomolecules]
Reposted by arXiv q-bio.BM Biomolecules
Naeyma N. Islam, Thomas R. Caulfield: Conditioned Generative Modeling of Molecular Glues: A Realistic AI Approach for Synthesizable Drug-like Molecules https://arxiv.org/abs/2601.18716 https://arxiv.org/pdf/2601.18716 https://arxiv.org/html/2601.18716
January 27, 2026 at 6:30 AM
Naeyma N. Islam, Thomas R. Caulfield: Conditioned Generative Modeling of Molecular Glues: A Realistic AI Approach for Synthesizable Drug-like Molecules https://arxiv.org/abs/2601.18716 https://arxiv.org/pdf/2601.18716 https://arxiv.org/html/2601.18716
Reposted by arXiv q-bio.BM Biomolecules
Biraja Ghoshal: The Quantum Cliff: A Critical Proton Tunneling Threshold Determines Clinical Severity in RPE65-Mediated Retinal Disease https://arxiv.org/abs/2601.18435 https://arxiv.org/pdf/2601.18435 https://arxiv.org/html/2601.18435
January 27, 2026 at 6:31 AM
Biraja Ghoshal: The Quantum Cliff: A Critical Proton Tunneling Threshold Determines Clinical Severity in RPE65-Mediated Retinal Disease https://arxiv.org/abs/2601.18435 https://arxiv.org/pdf/2601.18435 https://arxiv.org/html/2601.18435
Linhui Xie, Aurelien Pelissier, Yanjun Shao, Mar'ia Rodriguez Martinez: AI Developments for T and B Cell Receptor Modeling and Therapeutic Design https://arxiv.org/abs/2601.17138 https://arxiv.org/pdf/2601.17138 https://arxiv.org/html/2601.17138
January 27, 2026 at 6:49 AM
Linhui Xie, Aurelien Pelissier, Yanjun Shao, Mar'ia Rodriguez Martinez: AI Developments for T and B Cell Receptor Modeling and Therapeutic Design https://arxiv.org/abs/2601.17138 https://arxiv.org/pdf/2601.17138 https://arxiv.org/html/2601.17138
[2026-01-27 Tue (UTC), 1 new article found for q-bioBM Biomolecules]
January 27, 2026 at 6:49 AM
[2026-01-27 Tue (UTC), 1 new article found for q-bioBM Biomolecules]
[2026-01-26 Mon (UTC), no new articles found for q-bioBM Biomolecules]
January 26, 2026 at 6:54 AM
[2026-01-26 Mon (UTC), no new articles found for q-bioBM Biomolecules]